POLR3B (RNA polymerase III subunit B) - Rat Genome Database
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Gene: POLR3B (RNA polymerase III subunit B) Sus scrofa
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Symbol: POLR3B
Name: RNA polymerase III subunit B
RGD ID: 13874627
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-directed 5'-3' RNA polymerase activity (inferred); metal ion binding (inferred); INVOLVED IN positive regulation of innate immune response (inferred); positive regulation of interferon-beta production (inferred); transcription, DNA-templated (inferred); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH Cerebellar Hypoplasia with Endosteal Sclerosis (ortholog); genetic disease (ortholog); hypogonadotropic hypogonadism 7 with or without anosmia (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: DNA-directed RNA polymerase III subunit RPC2; polymerase (RNA) III (DNA directed) polypeptide B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl513,590,851 - 13,926,604 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1513,805,157 - 13,926,733 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2513,910,702 - 14,030,557 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
POLR3B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl513,590,851 - 13,926,604 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1513,805,157 - 13,926,733 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2513,910,702 - 14,030,557 (-)NCBISscrofa10.2Sscrofa10.2susScr3
POLR3B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12106,357,748 - 106,510,198 (+)EnsemblGRCh38hg38GRCh38
GRCh3812106,357,712 - 106,510,198 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712106,751,526 - 106,903,976 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh3712106,751,436 - 106,903,976 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612105,275,619 - 105,428,105 (+)NCBINCBI36hg18NCBI36
Build 3412105,253,955 - 105,406,442NCBI
Celera12106,417,035 - 106,569,571 (+)NCBI
Cytogenetic Map12q23.3NCBI
HuRef12103,811,761 - 103,964,299 (+)NCBIHuRef
CHM1_112106,717,271 - 106,869,784 (+)NCBICHM1_1
Polr3b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391084,458,156 - 84,563,042 (+)NCBIGRCm39mm39
GRCm381084,622,292 - 84,727,178 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1084,622,292 - 84,727,178 (+)EnsemblGRCm38mm10GRCm38
MGSCv371084,085,182 - 84,189,923 (+)NCBIGRCm37mm9NCBIm37
MGSCv361084,052,236 - 84,156,977 (+)NCBImm8
Celera1086,601,354 - 86,706,135 (+)NCBICelera
Cytogenetic Map10C1NCBI
Polr3b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2719,039,179 - 19,142,450 (-)NCBI
Rnor_6.0 Ensembl724,745,051 - 24,851,227 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0724,745,051 - 24,851,227 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0724,893,473 - 24,997,174 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4721,167,374 - 21,271,601 (-)NCBIRGSC3.4rn4RGSC3.4
Celera716,249,574 - 16,351,645 (-)NCBICelera
Cytogenetic Map7q13NCBI
Polr3b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540540,353,281 - 40,451,479 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540540,353,289 - 40,451,445 (+)NCBIChiLan1.0ChiLan1.0
POLR3B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112107,330,315 - 107,477,279 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12107,330,306 - 107,477,279 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012103,936,650 - 104,083,470 (+)NCBIMhudiblu_PPA_v0panPan3
POLR3B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1032,202,190 - 32,309,614 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11032,202,188 - 32,309,775 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Polr3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049364928,415,997 - 8,544,149 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POLR3B
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111101,577,134 - 101,719,214 (+)NCBI
ChlSab1.1 Ensembl11101,585,900 - 101,713,126 (+)Ensembl
Polr3b
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247502,906,041 - 3,004,241 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3 9
Low 10 4 5 2 14 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000000177   ⟹   ENSSSCP00000000175
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl513,590,851 - 13,758,567 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000028672   ⟹   ENSSSCP00000023225
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl513,804,930 - 13,926,604 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000052954   ⟹   ENSSSCP00000048808
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl513,590,851 - 13,661,336 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000069744   ⟹   ENSSSCP00000071303
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl513,610,686 - 13,926,604 (-)Ensembl
RefSeq Acc Id: XM_021091574   ⟹   XP_020947233
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1513,805,157 - 13,926,733 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021091575   ⟹   XP_020947234
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1513,809,102 - 13,926,724 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021091576   ⟹   XP_020947235
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1513,805,166 - 13,926,315 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020947233 (Get FASTA)   NCBI Sequence Viewer  
  XP_020947234 (Get FASTA)   NCBI Sequence Viewer  
  XP_020947235 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein JAG69265 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020947233   ⟸   XM_021091574
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020947235   ⟸   XM_021091576
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020947234   ⟸   XM_021091575
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000071303   ⟸   ENSSSCT00000069744
RefSeq Acc Id: ENSSSCP00000048808   ⟸   ENSSSCT00000052954
RefSeq Acc Id: ENSSSCP00000023225   ⟸   ENSSSCT00000028672
RefSeq Acc Id: ENSSSCP00000000175   ⟸   ENSSSCT00000000177

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000000169 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070030535 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000023225 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000071303 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070052403 UniProtKB/TrEMBL
  ENSSSCP00070052406 UniProtKB/TrEMBL
  ENSSSCP00070052407 UniProtKB/TrEMBL
  ENSSSCP00070052408 UniProtKB/TrEMBL
  ENSSSCP00070052409 UniProtKB/TrEMBL
  ENSSSCP00070052412 UniProtKB/TrEMBL
  ENSSSCP00070052413 UniProtKB/TrEMBL
  ENSSSCP00070052414 UniProtKB/TrEMBL
  ENSSSCP00070052416 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000028672 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000069744 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070061464 UniProtKB/TrEMBL
  ENSSSCT00070061467 UniProtKB/TrEMBL
  ENSSSCT00070061468 UniProtKB/TrEMBL
  ENSSSCT00070061469 UniProtKB/TrEMBL
  ENSSSCT00070061470 UniProtKB/TrEMBL
  ENSSSCT00070061473 UniProtKB/TrEMBL
  ENSSSCT00070061474 UniProtKB/TrEMBL
  ENSSSCT00070061475 UniProtKB/TrEMBL
  ENSSSCT00070061477 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
  2.40.270.10 UniProtKB/TrEMBL
  2.40.50.150 UniProtKB/TrEMBL
  3.90.1110.10 UniProtKB/TrEMBL
InterPro DNA-bd_RFX UniProtKB/TrEMBL
  DNA-dir_RNA_pol_su2 UniProtKB/TrEMBL
  DNA-dir_RNAP_su2_dom UniProtKB/TrEMBL
  DNA-dir_RNAP_su2_hyb_sf UniProtKB/TrEMBL
  RFX-like UniProtKB/TrEMBL
  RNA_pol_bsu_CS UniProtKB/TrEMBL
  RNA_pol_bsu_protrusion UniProtKB/TrEMBL
  RNA_pol_Rpb2_2 UniProtKB/TrEMBL
  RNA_pol_Rpb2_2_sf UniProtKB/TrEMBL
  RNA_pol_Rpb2_3 UniProtKB/TrEMBL
  RNA_pol_Rpb2_4 UniProtKB/TrEMBL
  RNA_pol_Rpb2_5 UniProtKB/TrEMBL
  RNA_pol_Rpb2_7 UniProtKB/TrEMBL
  RNA_pol_RPB2_OB-fold UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene POLR3B ENTREZGENE
PANTHER PTHR12619 UniProtKB/TrEMBL
  PTHR20856 UniProtKB/TrEMBL
Pfam RFX_DNA_binding UniProtKB/TrEMBL
  RNA_pol_Rpb2_1 UniProtKB/TrEMBL
  RNA_pol_Rpb2_2 UniProtKB/TrEMBL
  RNA_pol_Rpb2_3 UniProtKB/TrEMBL
  RNA_pol_Rpb2_4 UniProtKB/TrEMBL
  RNA_pol_Rpb2_5 UniProtKB/TrEMBL
  RNA_pol_Rpb2_6 UniProtKB/TrEMBL
  RNA_pol_Rpb2_7 UniProtKB/TrEMBL
PROSITE RFX_DBD UniProtKB/TrEMBL
  RNA_POL_BETA UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
UniProt A0A4X1W7H2_PIG UniProtKB/TrEMBL
  A0A4X1W7H8_PIG UniProtKB/TrEMBL
  A0A4X1WCV5_PIG UniProtKB/TrEMBL
  A0A4X1WCW0_PIG UniProtKB/TrEMBL
  A0A4X1WCW3_PIG UniProtKB/TrEMBL
  A0A4X1WCW4_PIG UniProtKB/TrEMBL
  A0A4X1WD21_PIG UniProtKB/TrEMBL
  A0A4X1WD25_PIG UniProtKB/TrEMBL
  A0A4X1WD29_PIG UniProtKB/TrEMBL
  A0A5G2R4P0_PIG UniProtKB/TrEMBL
  I3LGN1_PIG UniProtKB/TrEMBL