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Gene: SLC39A8 (solute carrier family 39 member 8) Sus scrofa

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Symbol:

SLC39A8

Name:

solute carrier family 39 member 8

RGD ID:

13873846

Description:

ENCODES a protein that exhibits metal ion transmembrane transporter activity (inferred); monoatomic cation:bicarbonate symporter activity (inferred); zinc:bicarbonate symporter activity (inferred); INVOLVED IN arginine metabolic process (ortholog); cadmium ion transmembrane transport (ortholog); cartilage homeostasis (ortholog); PARTICIPATES IN iron uptake pathway; ASSOCIATED WITH beta-mannosidosis (ortholog); congenital disorder of glycosylation type IIn (ortholog); Crohn's disease (ortholog); FOUND IN apical plasma membrane (inferred); basolateral plasma membrane (inferred); lysosomal membrane (inferred); INTERACTS WITH deoxynivalenol

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

solute carrier family 39 (zinc transporter), member 8 tv2; zinc transporter ZIP8

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	118,605,402 - 118,678,107 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	118,604,852 - 118,678,115 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	127,753,647 - 127,825,292 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

beta-mannosidosis (ISO)

congenital disorder of glycosylation type IIn (ISO)

Crohn's disease (ISO)

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

inflammatory bowel disease 1 (ISO)

left ventricular noncompaction (ISO)

Manganese Poisoning (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

deoxynivalenol (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

arginine metabolic process (IEA,ISO)

bicarbonate transport (IEA)

cadmium ion transmembrane transport (IEA,ISO)

cartilage homeostasis (IEA,ISO)

cellular detoxification of cadmium ion (IEA)

cobalt ion transport (ISO)

DNA-templated transcription (IEA,ISO)

extracellular matrix organization (IEA,ISO)

intracellular manganese ion homeostasis (IEA)

intracellular monoatomic cation homeostasis (IBA)

intracellular zinc ion homeostasis (IEA)

iron ion import across plasma membrane (IEA)

leukocyte adhesion to arterial endothelial cell (IEA,ISO)

manganese ion transmembrane transport (IEA)

mercury ion transport (IEA)

metal ion transport (IEA)

mitochondrial manganese ion transmembrane transport (IEA)

negative regulation of canonical NF-kappaB signal transduction (IEA,ISO)

negative regulation of inflammatory response (IEA,ISO)

plasma membrane selenite transport (IEA)

protein N-linked glycosylation (IEA,ISO)

regulation of DNA-templated transcription (IEA,ISO)

regulation of membrane potential (IEA)

transmembrane transport (IEA)

zinc ion import across plasma membrane (IBA,IEA)

zinc ion transmembrane transport (IEA)

zinc ion transport (IEA)

Cellular Component

apical plasma membrane (IEA)

basolateral plasma membrane (IEA)

lysosomal membrane (IEA)

membrane (IEA)

organelle membrane (IEA)

plasma membrane (IBA,IEA)

Molecular Function

metal ion transmembrane transporter activity (IEA)

monoatomic cation:bicarbonate symporter activity (IBA,IEA)

zinc ion transmembrane transporter activity (IBA)

zinc:bicarbonate symporter activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

iron uptake pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

SLC39A8
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	118,605,402 - 118,678,107 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	118,604,852 - 118,678,115 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	127,753,647 - 127,825,292 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC39A8
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	102,251,041 - 102,345,482 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	102,251,080 - 102,431,258 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	103,172,198 - 103,266,639 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	103,401,844 - 103,485,371 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	103,539,998 - 103,623,526	NCBI
Celera	4	100,470,678 - 100,565,146 (-)	NCBI		Celera
Cytogenetic Map	4	q24	NCBI
HuRef	4	98,909,550 - 99,003,934 (-)	NCBI		HuRef
CHM1_1	4	103,148,714 - 103,243,025 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	105,565,252 - 105,659,701 (-)	NCBI		T2T-CHM13v2.0

Slc39a8
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	135,522,644 - 135,594,333 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	135,531,040 - 135,594,333 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	135,816,882 - 135,888,572 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	135,825,279 - 135,888,572 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	135,488,455 - 135,551,536 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	135,763,475 - 135,825,778 (+)	NCBI		MGSCv36	mm8
Celera	3	142,245,991 - 142,312,950 (+)	NCBI		Celera
Cytogenetic Map	3	G3	NCBI
cM Map	3	63.04	NCBI

Slc39a8
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	226,845,686 - 226,992,668 (+)	NCBI		GRCr8
mRatBN7.2	2	224,171,787 - 224,319,326 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	224,256,654 - 224,319,129 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	231,982,580 - 232,044,754 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	229,882,319 - 229,944,486 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	224,746,913 - 224,809,087 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	241,028,851 - 241,092,584 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	241,029,693 - 241,092,582 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	259,584,747 - 259,648,098 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	233,340,397 - 233,403,461 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	233,327,136 - 233,390,197 (+)	NCBI
Celera	2	216,458,405 - 216,522,357 (+)	NCBI		Celera
Cytogenetic Map	2	q43	NCBI

Slc39a8
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955496	6,040,029 - 6,109,907 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955496	6,016,727 - 6,106,965 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC39A8
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	100,339,570 - 100,430,481 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	100,626,388 - 100,716,146 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	94,675,458 - 94,770,380 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	105,339,488 - 105,433,813 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	105,339,488 - 105,433,568 (-)	Ensembl	panpan1.1		panPan2

SLC39A8
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	32	23,727,920 - 23,801,459 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	32	23,729,476 - 23,800,941 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	32	18,223,143 - 18,296,028 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	32	23,949,019 - 24,021,586 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	32	23,949,029 - 24,022,702 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	32	23,928,002 - 24,000,562 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	32	23,708,061 - 23,781,012 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	32	16,083,043 - 16,156,566 (+)	NCBI		UU_Cfam_GSD_1.0

Slc39a8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405301	17,620,065 - 17,693,363 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936520	962,756 - 1,037,274 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936520	961,376 - 1,036,801 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC39A8
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	50,355,756 - 50,451,253 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	50,367,436 - 50,451,510 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	28,867,139 - 28,956,324 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc39a8
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624830	5,514,780 - 5,574,894 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624830	5,514,595 - 5,573,250 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SLC39A8
2978 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	23	3	2	5	14	12	23	3	6	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013979001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021101717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021101718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GACC01000283	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01000231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000010041 ⟹ ENSSSCP00000009778

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	8	118,605,293 - 118,684,039 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000040082 ⟹ ENSSSCP00000038853

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	8	118,605,402 - 118,678,107 (+)	Ensembl

RefSeq Acc Id:

XM_013979001 ⟹ XP_013834455

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	8	118,605,402 - 118,678,113 (+)	NCBI

Sequence:

show sequence

AGGCGAGGTGAGAGGTTAGAAGTAGCTAACCTACTAGCTTGCCCAGGCGGAGAAGAGGTCTGGG
AGAGGGAGGGTCCCGATTAGACGCTCAAACCCCAGGACCCTGAGGTGGCCATTTCCTGCGGCTT
CCTGGGGACTACACGTCTCACCCCTTCTACGTTTGCTCTGAAGGAATTAAGCAGAAAGAAAGGA
AGAGGAGGCTCTCCAGGAGGCCCGGGGGCCCGCTCTGTCTATCGCTCCCCACCCCCGGCTGCAC
CGTCACTTCAATGCCCGGCAGATCGCGGGCTGCGGCTCTTTCAAAGGCGGCGGAGGACCAGGGG
CGCCCCGCGCCAAGGCTGACTCGGACCGGCGCCGAAGCCTGACCCGTGCGCCCTTGGGCACCGA
CGCGCGTCCCTGTGCACTTCGGGCCCGCGTGGGGCAGCCCCGGCCAGGATGGCCCCAGGCCGGG
CGGTGGCAGGGCTCCTGTTGCTGGCGGCCGCCGGCCTCGGAGGAGAGACTGCGGGGCCCGAGCT
CGCCTTCAGCGAGGATGTGCTGAGCGTGTTCGGCGCGAACAGGAGCCTGTCGGTGGCGCAGCTC
CGGCGCTTGTTGGAGCAGCTGGGATCCGGCCCCGTGGAGGGCGCCCCCGAGCTCGGGCAGCTGC
ACTTCAACCAGTGTTTATCAGCTGAAGAGATCTTTTCCCTCCATGGCTTTTCAAATGCGACGCA
GATAACCAGCTCAAACTTCTCTGTCATCTGTCCAGCAGTCTTACAGCAACTGAACTTTCACCCT
TGCAAGGATCGGCCCAAGCACAAAACAAAACCGAGTCTTTCAGAGGTTTGGGGATACGGCTTCC
TGTCAGTGACAGTTATTAATCTGGCATCTCTCCTCGGATTGATTTTGACTCCATTGATAAAGAA
ATCTTATTTCCCTAAGATTTTGACCTATTTCGTGGGGCTGGCTATTGGGACTCTCTTTTCCAAT
GCCATTTTCCAACTTATTCCAGAGGCATTTGGATTCAATCCCAAAGTTGACAACTATGTTGAAA
AGGCAGTTGCTGTGTTTGGTGGATTTTACATATTTTTCTTTGTAGAAAGAATGCTTAAGATGTT
ATTAAAGACATATGGTCAGAATGGTCATACCCACTTTGGAAATGATGACTTTGGTCCTTCTCAG
GAAAAAACTCATCAACCTAAAACGTTACCTGCCATCAATGGTGTGACATGTTATGCAAACCCGG
CTGTCACAGAGCCTAATGGACACATCCATTTTGATAACGTCAGTGTGGTGTCTTTACAGGATGG
AAAAAAAGAGTCAAGTTGCTGTAGCTGTCTGAAGGGGCCGAAACTCTCAGAAATAGGGACAATT
GCCTGGATGATAACGCTCAGTGACGCCCTCCACAATTTCATCGACGGCCTGGCCATCGGGGCCT
CCTTCACCCTGTCTCTTCTGCAGGGACTCAGCACTTCCATAGCCATCCTCTGTGAGGAGTTCCC
TCACGAGCTAGGGGACTTTGTGATCCTCCTCAATGCAGGAATGAGCACTCGACAAGCCCTATTA
TTCAATTTCCTTTCTGCGTGTTCCTGCTATGTTGGGCTAGCTTTAGGCATTTTGGTGGGCAATA
ATTTTGCTCCAAATATCATATTTGCACTTGCTGGAGGCATGTTCCTTTACATTTCTCTGGCGGA
CATGTTTCCAGAGATGAACGATATGCTGCGAGAAAAGGTAACTGGAAGGAAAACCGATTTCACC
TTCTTCATGATTCAGAATGCTGGAATGTTAACCGGCTTCATAGCCATTCTGCTCATCACATTGT
ATGCAGGAGAAATCGAACTGGAGTGATAGGAAATGAAAGGTGTGTTAATGGAGACATTTAATAA
ATAAAACAGCTCCAAAGGGATTTTTAAGCTGGATCCTATTTAGACCAAAGATAATTTTGTTTTT
CAACCGTACATTGGGAAAACTGATTATTGGTTTCAGATCTGTGAAATAAGCCATTATTTGTTGT
TAAAAATGCTTCAAAAAAGCTTTCAGTTCCAGTCTGAAGAGCCTGATAGATGAGATCTTTAGTA
AATACCCACTTTTTTAAATGTGTCATGCCCACTAAAAATCATCACGAAGCAAGAAACATGCATT
CCGTAATCCTTTAGACACCAAGACCTGGATAAAAAAATGCAGAGTAGGCTGTATAAGCTTTTAA
ACCTCTCTGGTCGGATCAAATGTTCAAGTAGTTTCAGAGTGGTTTTCTTTCAGTTAATTTGTTC
TAGTGCTTTCACCAGCATGTACATCAAAATGCGGACGAGGATGAAAAAGTATACAACACGGATG
TAACTGATTTCAAGGCCTTAGTGAACCCAGGAGAGAAAGATTACTCAGAGCTTTTACTTTGTTT
TATATTTCAGTTAGGGACTGACTTGTAGGATTGTTTTAAGAACCATTCTAAAATAATATGAACT
GTGACATCAGGAAAGTTTTGTTAGCCCTACTACATTCAGCCCTTGTTTGATATTTTATCTCTAA
GTGTAAACTCTACCAGAGTCCATTAAAAAGCCAGAATTGCTTTCTCGTGACTTAGGTTGTGGTT
ATACCACAGCAAATGGCAATACAGTATGTAAAGATGGTGACAGTTCAGGTTTCGGTATCCAAGT
GGCCAATGTGTTTGCTTTGTAATTTATAGAAAGAAATTGAAGGTAATTTTAAGCAATTTACTTT
TAAAGATGAATACAACTATTTAGCAGAGGCTATTTTAAGTAAATACAAAATAACAGCTGCATGG
CTGTATGTCAAAGACTGATTGACTTAAGAAATAGATGTTTCTGATGGGTGATTGAGAGACATTC
AGACGATACTTCTTTTGTGTTCAGTCTAGATTTTTCCTATATGGTATTCCTTGCAAAAAAAAAA
AAATTTCTACCCATTGTGGTTATTTTTCTACCAATTTTAAAAGTTAGGGCCTGTTTATTCATTT
AGCAGATACGGAAAGTTGGTCTACAATTGAACATCCCAACCCCAATTCACACTCCCACGTCTCT
TAAGGAAAGATTTGACAGTGAGGAAAATGACTGATAAAAGCCAACAGTGATCTCAAGAATTGCA
TTTTCTCACCAGCCATAAGATGGTGTCACATAGCAATAATGCAGGTGTGAAGAATACTTAACAT
GTGTGTTAGTATTAACATGTGTGTTAATGTACATTTTGCTCTATGACTGACAATTAAAAAATAT
TGTTTGACCAAATAGTAAACACCTTTGAAACCA

hide sequence

RefSeq Acc Id:

XM_021101717 ⟹ XP_020957376

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	8	118,605,287 - 118,678,115 (+)	NCBI

Sequence:

show sequence

AGTTTCATAGCGGATTTGCCAGAGATAGTGTTGGGAGGGAGGAAGAGGGAGGGAGTAGAGAGAG
GCAGACAGTGACTCACGTGGACATAAACAGACGCAGAAACAAGAAACAAACAGGCGAGGCTCTC
CAGGAGGCCCGGGGGCCCGCTCTGTCTATCGCTCCCCACCCCCGGCTGCACCGTCACTTCAATG
CCCGGCAGATCGCGGGCTGCGGCTCTTTCAAAGGCGGCGGAGGACCAGGGGCGCCCCGCGCCAA
GGCTGACTCGGACCGGCGCCGAAGCCTGACCCGTGCGCCCTTGGGCACCGACGCGCGTCCCTGT
GCACTTCGGGCCCGCGTGGGGCAGCCCCGGCCAGGATGGCCCCAGGCCGGGCGGTGGCAGGGCT
CCTGTTGCTGGCGGCCGCCGGCCTCGGAGGAGAGACTGCGGGGCCCGAGCTCGCCTTCAGCGAG
GATGTGCTGAGCGTGTTCGGCGCGAACAGGAGCCTGTCGGTGGCGCAGCTCCGGCGCTTGTTGG
AGCAGCTGGGATCCGGCCCCGTGGAGGGCGCCCCCGAGCTCGGGCAGCTGCACTTCAACCAGTG
TTTATCAGCTGAAGAGATCTTTTCCCTCCATGGCTTTTCAAATGCGACGCAGATAACCAGCTCA
AACTTCTCTGTCATCTGTCCAGCAGTCTTACAGCAACTGAACTTTCACCCTTGCAAGGATCGGC
CCAAGCACAAAACAAAACCGAGTCTTTCAGAGGTTTGGGGATACGGCTTCCTGTCAGTGACAGT
TATTAATCTGGCATCTCTCCTCGGATTGATTTTGACTCCATTGATAAAGAAATCTTATTTCCCT
AAGATTTTGACCTATTTCGTGGGGCTGGCTATTGGGACTCTCTTTTCCAATGCCATTTTCCAAC
TTATTCCAGAGGCATTTGGATTCAATCCCAAAGTTGACAACTATGTTGAAAAGGCAGTTGCTGT
GTTTGGTGGATTTTACATATTTTTCTTTGTAGAAAGAATGCTTAAGATGTTATTAAAGACATAT
GGTCAGAATGGTCATACCCACTTTGGAAATGATGACTTTGGTCCTTCTCAGGAAAAAACTCATC
AACCTAAAACGTTACCTGCCATCAATGGTGTGACATGTTATGCAAACCCGGCTGTCACAGAGCC
TAATGGACACATCCATTTTGATAACGTCAGTGTGGTGTCTTTACAGGATGGAAAAAAAGAGTCA
AGTTGCTGTAGCTGTCTGAAGGGGCCGAAACTCTCAGAAATAGGGACAATTGCCTGGATGATAA
CGCTCAGTGACGCCCTCCACAATTTCATCGACGGCCTGGCCATCGGGGCCTCCTTCACCCTGTC
TCTTCTGCAGGGACTCAGCACTTCCATAGCCATCCTCTGTGAGGAGTTCCCTCACGAGCTAGGG
GACTTTGTGATCCTCCTCAATGCAGGAATGAGCACTCGACAAGCCCTATTATTCAATTTCCTTT
CTGCGTGTTCCTGCTATGTTGGGCTAGCTTTAGGCATTTTGGTGGGCAATAATTTTGCTCCAAA
TATCATATTTGCACTTGCTGGAGGCATGTTCCTTTACATTTCTCTGGCGGACATGTTTCCAGAG
ATGAACGATATGCTGCGAGAAAAGGTAACTGGAAGGAAAACCGATTTCACCTTCTTCATGATTC
AGAATGCTGGAATGTTAACCGGCTTCATAGCCATTCTGCTCATCACATTGTATGCAGGAGAAAT
CGAACTGGAGTGATAGGAAATGAAAGGTGTGTTAATGGAGACATTTAATAAATAAAACAGCTCC
AAAGGGATTTTTAAGCTGGATCCTATTTAGACCAAAGATAATTTTGTTTTTCAACCGTACATTG
GGAAAACTGATTATTGGTTTCAGATCTGTGAAATAAGCCATTATTTGTTGTTAAAAATGCTTCA
AAAAAGCTTTCAGTTCCAGTCTGAAGAGCCTGATAGATGAGATCTTTAGTAAATACCCACTTTT
TTAAATGTGTCATGCCCACTAAAAATCATCACGAAGCAAGAAACATGCATTCCGTAATCCTTTA
GACACCAAGACCTGGATAAAAAAATGCAGAGTAGGCTGTATAAGCTTTTAAACCTCTCTGGTCG
GATCAAATGTTCAAGTAGTTTCAGAGTGGTTTTCTTTCAGTTAATTTGTTCTAGTGCTTTCACC
AGCATGTACATCAAAATGCGGACGAGGATGAAAAAGTATACAACACGGATGTAACTGATTTCAA
GGCCTTAGTGAACCCAGGAGAGAAAGATTACTCAGAGCTTTTACTTTGTTTTATATTTCAGTTA
GGGACTGACTTGTAGGATTGTTTTAAGAACCATTCTAAAATAATATGAACTGTGACATCAGGAA
AGTTTTGTTAGCCCTACTACATTCAGCCCTTGTTTGATATTTTATCTCTAAGTGTAAACTCTAC
CAGAGTCCATTAAAAAGCCAGAATTGCTTTCTCGTGACTTAGGTTGTGGTTATACCACAGCAAA
TGGCAATACAGTATGTAAAGATGGTGACAGTTCAGGTTTCGGTATCCAAGTGGCCAATGTGTTT
GCTTTGTAATTTATAGAAAGAAATTGAAGGTAATTTTAAGCAATTTACTTTTAAAGATGAATAC
AACTATTTAGCAGAGGCTATTTTAAGTAAATACAAAATAACAGCTGCATGGCTGTATGTCAAAG
ACTGATTGACTTAAGAAATAGATGTTTCTGATGGGTGATTGAGAGACATTCAGACGATACTTCT
TTTGTGTTCAGTCTAGATTTTTCCTATATGGTATTCCTTGCAAAAAAAAAAAAATTTCTACCCA
TTGTGGTTATTTTTCTACCAATTTTAAAAGTTAGGGCCTGTTTATTCATTTAGCAGATACGGAA
AGTTGGTCTACAATTGAACATCCCAACCCCAATTCACACTCCCACGTCTCTTAAGGAAAGATTT
GACAGTGAGGAAAATGACTGATAAAAGCCAACAGTGATCTCAAGAATTGCATTTTCTCACCAGC
CATAAGATGGTGTCACATAGCAATAATGCAGGTGTGAAGAATACTTAACATGTGTGTTAGTATT
AACATGTGTGTTAATGTACATTTTGCTCTATGACTGACAATTAAAAAATATTGTTTGACCAAAT
AGTAAACACCTTTGAAACCATG

hide sequence

RefSeq Acc Id:

XM_021101718 ⟹ XP_020957377

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	8	118,604,852 - 118,678,113 (+)	NCBI

Sequence:

show sequence

TCAGGAAGGGCCGGCTCTGCACTGCTGGCTCAGTGAGCTTGCCACCGATACAGATTCGGTTTCC
TTTTGCTCCTGACTTTAAGAAGTAAGACAAAAAAGCAATTCCTGCTAATCTCTTAGACAATGCA
AAAGGCTCCACACTCTATTCCAGGAAGCTGGTTTCAACAAGGTAACAGACCACCAAGCCCAGAA
GGGAGTCTAGGGATATCGACAAGGAGGTGGCATTCAGGCTCTCCAGGAGGCCCGGGGGCCCGCT
CTGTCTATCGCTCCCCACCCCCGGCTGCACCGTCACTTCAATGCCCGGCAGATCGCGGGCTGCG
GCTCTTTCAAAGGCGGCGGAGGACCAGGGGCGCCCCGCGCCAAGGCTGACTCGGACCGGCGCCG
AAGCCTGACCCGTGCGCCCTTGGGCACCGACGCGCGTCCCTGTGCACTTCGGGCCCGCGTGGGG
CAGCCCCGGCCAGGATGGCCCCAGGCCGGGCGGTGGCAGGGCTCCTGTTGCTGGCGGCCGCCGG
CCTCGGAGGAGAGACTGCGGGGCCCGAGCTCGCCTTCAGCGAGGATGTGCTGAGCGTGTTCGGC
GCGAACAGGAGCCTGTCGGTGGCGCAGCTCCGGCGCTTGTTGGAGCAGCTGGGATCCGGCCCCG
TGGAGGGCGCCCCCGAGCTCGGGCAGCTGCACTTCAACCAGTGTTTATCAGCTGAAGAGATCTT
TTCCCTCCATGGCTTTTCAAATGCGACGCAGATAACCAGCTCAAACTTCTCTGTCATCTGTCCA
GCAGTCTTACAGCAACTGAACTTTCACCCTTGCAAGGATCGGCCCAAGCACAAAACAAAACCGA
GTCTTTCAGAGGTTTGGGGATACGGCTTCCTGTCAGTGACAGTTATTAATCTGGCATCTCTCCT
CGGATTGATTTTGACTCCATTGATAAAGAAATCTTATTTCCCTAAGATTTTGACCTATTTCGTG
GGGCTGGCTATTGGGACTCTCTTTTCCAATGCCATTTTCCAACTTATTCCAGAGGCATTTGGAT
TCAATCCCAAAGTTGACAACTATGTTGAAAAGGCAGTTGCTGTGTTTGGTGGATTTTACATATT
TTTCTTTGTAGAAAGAATGCTTAAGATGTTATTAAAGACATATGGTCAGAATGGTCATACCCAC
TTTGGAAATGATGACTTTGGTCCTTCTCAGGAAAAAACTCATCAACCTAAAACGTTACCTGCCA
TCAATGGTGTGACATGTTATGCAAACCCGGCTGTCACAGAGCCTAATGGACACATCCATTTTGA
TAACGTCAGTGTGGTGTCTTTACAGGATGGAAAAAAAGAGTCAAGTTGCTGTAGCTGTCTGAAG
GGGCCGAAACTCTCAGAAATAGGGACAATTGCCTGGATGATAACGCTCAGTGACGCCCTCCACA
ATTTCATCGACGGCCTGGCCATCGGGGCCTCCTTCACCCTGTCTCTTCTGCAGGGACTCAGCAC
TTCCATAGCCATCCTCTGTGAGGAGTTCCCTCACGAGCTAGGGGACTTTGTGATCCTCCTCAAT
GCAGGAATGAGCACTCGACAAGCCCTATTATTCAATTTCCTTTCTGCGTGTTCCTGCTATGTTG
GGCTAGCTTTAGGCATTTTGGTGGGCAATAATTTTGCTCCAAATATCATATTTGCACTTGCTGG
AGGCATGTTCCTTTACATTTCTCTGGCGGACATGTTTCCAGAGATGAACGATATGCTGCGAGAA
AAGGTAACTGGAAGGAAAACCGATTTCACCTTCTTCATGATTCAGAATGCTGGAATGTTAACCG
GCTTCATAGCCATTCTGCTCATCACATTGTATGCAGGAGAAATCGAACTGGAGTGATAGGAAAT
GAAAGGTGTGTTAATGGAGACATTTAATAAATAAAACAGCTCCAAAGGGATTTTTAAGCTGGAT
CCTATTTAGACCAAAGATAATTTTGTTTTTCAACCGTACATTGGGAAAACTGATTATTGGTTTC
AGATCTGTGAAATAAGCCATTATTTGTTGTTAAAAATGCTTCAAAAAAGCTTTCAGTTCCAGTC
TGAAGAGCCTGATAGATGAGATCTTTAGTAAATACCCACTTTTTTAAATGTGTCATGCCCACTA
AAAATCATCACGAAGCAAGAAACATGCATTCCGTAATCCTTTAGACACCAAGACCTGGATAAAA
AAATGCAGAGTAGGCTGTATAAGCTTTTAAACCTCTCTGGTCGGATCAAATGTTCAAGTAGTTT
CAGAGTGGTTTTCTTTCAGTTAATTTGTTCTAGTGCTTTCACCAGCATGTACATCAAAATGCGG
ACGAGGATGAAAAAGTATACAACACGGATGTAACTGATTTCAAGGCCTTAGTGAACCCAGGAGA
GAAAGATTACTCAGAGCTTTTACTTTGTTTTATATTTCAGTTAGGGACTGACTTGTAGGATTGT
TTTAAGAACCATTCTAAAATAATATGAACTGTGACATCAGGAAAGTTTTGTTAGCCCTACTACA
TTCAGCCCTTGTTTGATATTTTATCTCTAAGTGTAAACTCTACCAGAGTCCATTAAAAAGCCAG
AATTGCTTTCTCGTGACTTAGGTTGTGGTTATACCACAGCAAATGGCAATACAGTATGTAAAGA
TGGTGACAGTTCAGGTTTCGGTATCCAAGTGGCCAATGTGTTTGCTTTGTAATTTATAGAAAGA
AATTGAAGGTAATTTTAAGCAATTTACTTTTAAAGATGAATACAACTATTTAGCAGAGGCTATT
TTAAGTAAATACAAAATAACAGCTGCATGGCTGTATGTCAAAGACTGATTGACTTAAGAAATAG
ATGTTTCTGATGGGTGATTGAGAGACATTCAGACGATACTTCTTTTGTGTTCAGTCTAGATTTT
TCCTATATGGTATTCCTTGCAAAAAAAAAAAAATTTCTACCCATTGTGGTTATTTTTCTACCAA
TTTTAAAAGTTAGGGCCTGTTTATTCATTTAGCAGATACGGAAAGTTGGTCTACAATTGAACAT
CCCAACCCCAATTCACACTCCCACGTCTCTTAAGGAAAGATTTGACAGTGAGGAAAATGACTGA
TAAAAGCCAACAGTGATCTCAAGAATTGCATTTTCTCACCAGCCATAAGATGGTGTCACATAGC
AATAATGCAGGTGTGAAGAATACTTAACATGTGTGTTAGTATTAACATGTGTGTTAATGTACAT
TTTGCTCTATGACTGACAATTAAAAAATATTGTTTGACCAAATAGTAAACACCTTTGAAACCA

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Protein Sequences


Protein RefSeqs	XP_013834455	(Get FASTA)	NCBI Sequence Viewer
	XP_020957376	(Get FASTA)	NCBI Sequence Viewer
	XP_020957377	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000038853
	ENSSSCP00000038853.1
	ENSSSCP00025021290.1
	ENSSSCP00030001159.1
	ENSSSCP00035002177.1
	ENSSSCP00055032021.1
	ENSSSCP00065013222.1
	ENSSSCP00070028954.1
	ENSSSCP00070028970.1
	ENSSSCP00070028975.1
	ENSSSCP00070028983.1
GenBank Protein	JAA74301	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_020957377 ⟸ XM_021101718

- UniProtKB:

A0A480EKF5 (UniProtKB/TrEMBL), A0A8D0YLS2 (UniProtKB/TrEMBL), A0A8D0V689 (UniProtKB/TrEMBL), M3TYX7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAPGRAVAGLLLLAAAGLGGETAGPELAFSEDVLSVFGANRSLSVAQLRRLLEQLGSGPVEGAP
ELGQLHFNQCLSAEEIFSLHGFSNATQITSSNFSVICPAVLQQLNFHPCKDRPKHKTKPSLSEV
WGYGFLSVTVINLASLLGLILTPLIKKSYFPKILTYFVGLAIGTLFSNAIFQLIPEAFGFNPKV
DNYVEKAVAVFGGFYIFFFVERMLKMLLKTYGQNGHTHFGNDDFGPSQEKTHQPKTLPAINGVT
CYANPAVTEPNGHIHFDNVSVVSLQDGKKESSCCSCLKGPKLSEIGTIAWMITLSDALHNFIDG
LAIGASFTLSLLQGLSTSIAILCEEFPHELGDFVILLNAGMSTRQALLFNFLSACSCYVGLALG
ILVGNNFAPNIIFALAGGMFLYISLADMFPEMNDMLREKVTGRKTDFTFFMIQNAGMLTGFIAI
LLITLYAGEIELE

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RefSeq Acc Id:

XP_020957376 ⟸ XM_021101717

- UniProtKB:

A0A480EKF5 (UniProtKB/TrEMBL), A0A8D0YLS2 (UniProtKB/TrEMBL), A0A8D0V689 (UniProtKB/TrEMBL), M3TYX7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAPGRAVAGLLLLAAAGLGGETAGPELAFSEDVLSVFGANRSLSVAQLRRLLEQLGSGPVEGAP
ELGQLHFNQCLSAEEIFSLHGFSNATQITSSNFSVICPAVLQQLNFHPCKDRPKHKTKPSLSEV
WGYGFLSVTVINLASLLGLILTPLIKKSYFPKILTYFVGLAIGTLFSNAIFQLIPEAFGFNPKV
DNYVEKAVAVFGGFYIFFFVERMLKMLLKTYGQNGHTHFGNDDFGPSQEKTHQPKTLPAINGVT
CYANPAVTEPNGHIHFDNVSVVSLQDGKKESSCCSCLKGPKLSEIGTIAWMITLSDALHNFIDG
LAIGASFTLSLLQGLSTSIAILCEEFPHELGDFVILLNAGMSTRQALLFNFLSACSCYVGLALG
ILVGNNFAPNIIFALAGGMFLYISLADMFPEMNDMLREKVTGRKTDFTFFMIQNAGMLTGFIAI
LLITLYAGEIELE

hide sequence

RefSeq Acc Id:

XP_013834455 ⟸ XM_013979001

- UniProtKB:

A0A480EKF5 (UniProtKB/TrEMBL), A0A8D0YLS2 (UniProtKB/TrEMBL), A0A8D0V689 (UniProtKB/TrEMBL), M3TYX7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAPGRAVAGLLLLAAAGLGGETAGPELAFSEDVLSVFGANRSLSVAQLRRLLEQLGSGPVEGAP
ELGQLHFNQCLSAEEIFSLHGFSNATQITSSNFSVICPAVLQQLNFHPCKDRPKHKTKPSLSEV
WGYGFLSVTVINLASLLGLILTPLIKKSYFPKILTYFVGLAIGTLFSNAIFQLIPEAFGFNPKV
DNYVEKAVAVFGGFYIFFFVERMLKMLLKTYGQNGHTHFGNDDFGPSQEKTHQPKTLPAINGVT
CYANPAVTEPNGHIHFDNVSVVSLQDGKKESSCCSCLKGPKLSEIGTIAWMITLSDALHNFIDG
LAIGASFTLSLLQGLSTSIAILCEEFPHELGDFVILLNAGMSTRQALLFNFLSACSCYVGLALG
ILVGNNFAPNIIFALAGGMFLYISLADMFPEMNDMLREKVTGRKTDFTFFMIQNAGMLTGFIAI
LLITLYAGEIELE

hide sequence

Ensembl Acc Id:

ENSSSCP00000038853 ⟸ ENSSSCT00000040082

Ensembl Acc Id:

ENSSSCP00000009778 ⟸ ENSSSCT00000010041

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000009169	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00025036547	UniProtKB/TrEMBL
	ENSSSCG00030002292	UniProtKB/TrEMBL
	ENSSSCG00035004895	UniProtKB/TrEMBL
	ENSSSCG00055020455	UniProtKB/TrEMBL
	ENSSSCG00065024178	UniProtKB/TrEMBL
	ENSSSCG00070017522	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000040082	ENTREZGENE
	ENSSSCT00000040082.1	UniProtKB/TrEMBL
	ENSSSCT00025049826.1	UniProtKB/TrEMBL
	ENSSSCT00030002983.1	UniProtKB/TrEMBL
	ENSSSCT00035006164.1	UniProtKB/TrEMBL
	ENSSSCT00055040248.1	UniProtKB/TrEMBL
	ENSSSCT00065032222.1	UniProtKB/TrEMBL
	ENSSSCT00070034663.1	UniProtKB/TrEMBL
	ENSSSCT00070034681.1	UniProtKB/TrEMBL
	ENSSSCT00070034686.1	UniProtKB/TrEMBL
	ENSSSCT00070034694.1	UniProtKB/TrEMBL
InterPro	ZIP	UniProtKB/TrEMBL
	ZIP_Transporter	UniProtKB/TrEMBL
KEGG Report	ssc:100524695	UniProtKB/TrEMBL
NCBI Gene	SLC39A8	ENTREZGENE
PANTHER	METAL CATION SYMPORTER ZIP8	UniProtKB/TrEMBL
	SOLUTE CARRIER FAMILY 39	UniProtKB/TrEMBL
Pfam	Zip	UniProtKB/TrEMBL
UniProt	A0A480EKF5	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1UG27_PIG	UniProtKB/TrEMBL
	A0A8D0V689	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0YLS2	ENTREZGENE, UniProtKB/TrEMBL
	M3TYX7	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:93109	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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