ONECUT1 (one cut homeobox 1) - Rat Genome Database

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Gene: ONECUT1 (one cut homeobox 1) Sus scrofa
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Symbol: ONECUT1
Name: one cut homeobox 1
RGD ID: 13873558
Description: ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN anatomical structure morphogenesis (ortholog); B cell differentiation (ortholog); cell fate commitment (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hepatocyte nuclear factor 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1118,913,460 - 118,917,334 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11118,913,400 - 118,958,140 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21131,981,708 - 132,019,991 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ONECUT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1118,913,460 - 118,917,334 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11118,913,400 - 118,958,140 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21131,981,708 - 132,019,991 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ONECUT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381552,755,053 - 52,790,336 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1552,755,053 - 52,791,078 (-)EnsemblGRCh38hg38GRCh38
GRCh371553,047,250 - 53,082,533 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361550,836,645 - 50,869,501 (-)NCBINCBI36Build 36hg18NCBI36
Build 341550,836,644 - 50,869,501NCBI
Celera1529,944,311 - 29,977,184 (-)NCBICelera
Cytogenetic Map15q21.3NCBI
HuRef1529,879,668 - 29,912,665 (-)NCBIHuRef
CHM1_11553,167,071 - 53,200,155 (-)NCBICHM1_1
T2T-CHM13v2.01550,563,333 - 50,598,640 (-)NCBIT2T-CHM13v2.0
Onecut1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39974,769,203 - 74,796,930 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl974,769,203 - 74,799,063 (+)EnsemblGRCm39 Ensembl
GRCm38974,861,921 - 74,889,648 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl974,861,921 - 74,891,781 (+)EnsemblGRCm38mm10GRCm38
MGSCv37974,709,728 - 74,737,455 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36974,648,524 - 74,676,252 (+)NCBIMGSCv36mm8
Celera972,045,890 - 72,046,250 (+)NCBICelera
Cytogenetic Map9DNCBI
cM Map941.93NCBI
Onecut1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8884,480,066 - 84,507,848 (+)NCBIGRCr8
mRatBN7.2875,599,432 - 75,633,598 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl875,599,740 - 75,627,277 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx881,106,361 - 81,133,976 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0879,357,324 - 79,384,922 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0877,205,677 - 77,233,284 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0881,765,779 - 81,799,894 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl881,766,041 - 81,793,577 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0881,384,757 - 81,418,580 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4879,644,305 - 79,672,772 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1879,663,358 - 79,691,814 (+)NCBI
Celera875,394,297 - 75,421,855 (+)NCBICelera
Cytogenetic Map8q24NCBI
Onecut1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554092,181,346 - 2,207,888 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554092,181,364 - 2,214,636 (+)NCBIChiLan1.0ChiLan1.0
ONECUT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21641,982,502 - 42,023,294 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11546,162,843 - 46,203,617 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01531,694,830 - 31,727,644 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11550,017,606 - 50,053,058 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1550,016,010 - 50,053,062 (-)Ensemblpanpan1.1panPan2
ONECUT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13018,384,533 - 18,425,940 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3018,387,130 - 18,425,497 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3018,312,652 - 18,353,439 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03018,533,528 - 18,574,309 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3018,535,494 - 18,574,636 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13018,451,424 - 18,492,204 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03018,570,831 - 18,609,718 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03018,674,572 - 18,715,403 (-)NCBIUU_Cfam_GSD_1.0
LOC101960907
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864096,722,333 - 96,733,257 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647114,532,892 - 14,566,904 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647114,532,888 - 14,581,258 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ONECUT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12630,609,392 - 30,645,996 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048110,585,853 - 110,622,490 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Onecut1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247317,911,264 - 7,939,434 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247317,911,352 - 7,938,440 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ONECUT1
693 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

hemolymphoid system nervous system
High
Medium
Low 8
Below cutoff 1 4

Sequence


RefSeq Acc Id: ENSSSCT00000005097   ⟹   ENSSSCP00000004973
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1118,913,460 - 118,917,334 (+)Ensembl
RefSeq Acc Id: XM_001928991   ⟹   XP_001929026
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11118,913,400 - 118,958,140 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005659590   ⟹   XP_005659647
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11118,913,400 - 118,950,303 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021095149   ⟹   XP_020950808
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11118,913,400 - 118,939,705 (+)NCBI
Sequence:
RefSeq Acc Id: XP_001929026   ⟸   XM_001928991
- Peptide Label: isoform X1
- UniProtKB: A0A8D1E675 (UniProtKB/TrEMBL),   A0A480JMP2 (UniProtKB/TrEMBL),   A0A4X1TB71 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005659647   ⟸   XM_005659590
- Peptide Label: isoform X2
- UniProtKB: F1RZD6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950808   ⟸   XM_021095149
- Peptide Label: isoform X3
- UniProtKB: F1RZD6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000004973   ⟸   ENSSSCT00000005097
Protein Domains
CUT   Homeobox


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004616 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00015076970 UniProtKB/TrEMBL
  ENSSSCG00025008633 UniProtKB/TrEMBL
  ENSSSCG00030065733 UniProtKB/TrEMBL
  ENSSSCG00035026643 UniProtKB/TrEMBL
  ENSSSCG00040031531 UniProtKB/TrEMBL
  ENSSSCG00045029362 UniProtKB/TrEMBL
  ENSSSCG00050056339 UniProtKB/TrEMBL
  ENSSSCG00060048784 UniProtKB/TrEMBL
  ENSSSCG00065056623 UniProtKB/TrEMBL
  ENSSSCG00070007767 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000005097.5 UniProtKB/TrEMBL
  ENSSSCT00015103945.1 UniProtKB/TrEMBL
  ENSSSCT00025011478.1 UniProtKB/TrEMBL
  ENSSSCT00030091832.1 UniProtKB/TrEMBL
  ENSSSCT00035035158.1 UniProtKB/TrEMBL
  ENSSSCT00040042354.1 UniProtKB/TrEMBL
  ENSSSCT00045050063.1 UniProtKB/TrEMBL
  ENSSSCT00050076829.1 UniProtKB/TrEMBL
  ENSSSCT00060066254.1 UniProtKB/TrEMBL
  ENSSSCT00065077518.1 UniProtKB/TrEMBL
  ENSSSCT00070015015.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.260.40 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro CUT_dom UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Lambda_DNA-bd_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:100152052 UniProtKB/TrEMBL
NCBI Gene ONECUT1 ENTREZGENE
PANTHER HEPATOCYTE NUCLEAR FACTOR 6 UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR ONECUT UniProtKB/TrEMBL
Pfam CUT UniProtKB/TrEMBL
  Homeodomain UniProtKB/TrEMBL
PROSITE CUT UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
SMART CUT UniProtKB/TrEMBL
  HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
  SSF47413 UniProtKB/TrEMBL
UniProt A0A480JMP2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TB71 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1E675 ENTREZGENE, UniProtKB/TrEMBL
  F1RZD6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:91042 ENTREZGENE