CD1E (CD1e molecule) - Rat Genome Database

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Gene: CD1E (CD1e molecule) Sus scrofa
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Symbol: CD1E
Name: CD1e molecule
RGD ID: 13872782
Description: ENCODES a protein that exhibits endogenous lipid antigen binding (inferred); exogenous lipid antigen binding (inferred); lipopeptide binding (inferred); INVOLVED IN antigen processing and presentation, endogenous lipid antigen via MHC class Ib (inferred); antigen processing and presentation, exogenous lipid antigen via MHC class Ib (inferred); immune response (inferred); ASSOCIATED WITH amenorrhea (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN external side of plasma membrane (inferred); extracellular space (inferred); Golgi apparatus (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CD1E antigen; PCD1E; T-cell surface glycoprotein CD1e, membrane-associated
RGD Orthologs
Human
Bonobo
Dog
Squirrel
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl492,012,791 - 92,020,864 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1492,012,787 - 92,019,363 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24100,355,649 - 100,361,601 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17112699   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
CD1E
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl492,012,791 - 92,020,864 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1492,012,787 - 92,019,363 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24100,355,649 - 100,361,601 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CD1E
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381158,353,894 - 158,357,553 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1158,353,696 - 158,357,553 (+)EnsemblGRCh38hg38GRCh38
GRCh371158,323,684 - 158,327,343 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361156,590,164 - 156,593,967 (+)NCBINCBI36Build 36hg18NCBI36
Build 341155,136,851 - 155,139,458NCBI
Celera1131,394,529 - 131,398,386 (+)NCBICelera
Cytogenetic Map1q23.1NCBI
HuRef1129,681,497 - 129,685,339 (+)NCBIHuRef
CHM1_11159,719,855 - 159,723,698 (+)NCBICHM1_1
T2T-CHM13v2.01157,490,987 - 157,494,646 (+)NCBIT2T-CHM13v2.0
LOC100985794
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2191,490,689 - 91,494,269 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1191,234,604 - 91,238,176 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01133,712,012 - 133,716,093 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11137,502,315 - 137,506,799 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1137,502,315 - 137,506,799 (+)Ensemblpanpan1.1panPan2
CD1E
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13823,295,037 - 23,298,004 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3823,290,553 - 23,293,976 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03823,426,497 - 23,429,449 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3823,426,584 - 23,462,931 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13823,176,210 - 23,179,633 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03823,723,924 - 23,727,347 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03824,131,229 - 24,134,653 (-)NCBIUU_Cfam_GSD_1.0
Cd1e
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050584,760,731 - 4,764,153 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049367401,990,876 - 1,993,639 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103223791
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1205,573,905 - 5,588,338 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl205,572,822 - 5,577,064 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660384,761,446 - 4,764,972 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in CD1E
110 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system nervous system reproductive system respiratory system
High
Medium
Low 7 2 4 1 3
Below cutoff 3 2 1 6

Sequence


RefSeq Acc Id: ENSSSCT00000007064   ⟹   ENSSSCP00000006873
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl492,012,806 - 92,019,936 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000034868   ⟹   ENSSSCP00000029856
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl492,012,806 - 92,020,864 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000069964   ⟹   ENSSSCP00000066307
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl492,014,608 - 92,019,005 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000074855   ⟹   ENSSSCP00000069072
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl492,012,791 - 92,018,547 (-)Ensembl
RefSeq Acc Id: NM_001097492   ⟹   NP_001090961
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1492,015,063 - 92,018,537 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005663233   ⟹   XP_005663290
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1492,012,787 - 92,019,363 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005663290   ⟸   XM_005663233
- Peptide Label: isoform X1
- UniProtKB: A0A8D0T1V6 (UniProtKB/TrEMBL),   A0A5G2RE36 (UniProtKB/TrEMBL),   A0A8D0I6H7 (UniProtKB/TrEMBL),   A0A8D0YZJ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001090961   ⟸   NM_001097492
- Peptide Label: precursor
- UniProtKB: A0ZPR6 (UniProtKB/TrEMBL),   A0A8D0LFA1 (UniProtKB/TrEMBL),   A0ZQ08 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000029856   ⟸   ENSSSCT00000034868
RefSeq Acc Id: ENSSSCP00000069072   ⟸   ENSSSCT00000074855
RefSeq Acc Id: ENSSSCP00000066307   ⟸   ENSSSCT00000069964
RefSeq Acc Id: ENSSSCP00000006873   ⟸   ENSSSCT00000007064
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006450 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005004949 UniProtKB/TrEMBL
  ENSSSCG00015053474 UniProtKB/TrEMBL
  ENSSSCG00025066643 UniProtKB/TrEMBL
  ENSSSCG00030015507 UniProtKB/TrEMBL
  ENSSSCG00035020811 UniProtKB/TrEMBL
  ENSSSCG00040002870 UniProtKB/TrEMBL
  ENSSSCG00045016859 UniProtKB/TrEMBL
  ENSSSCG00050039164 UniProtKB/TrEMBL
  ENSSSCG00055028169 UniProtKB/TrEMBL
  ENSSSCG00060053114 UniProtKB/TrEMBL
  ENSSSCG00065021857 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000007064.4 UniProtKB/TrEMBL
  ENSSSCT00000034868.4 UniProtKB/TrEMBL
  ENSSSCT00000069964.1 UniProtKB/TrEMBL
  ENSSSCT00000074855 ENTREZGENE
  ENSSSCT00000074855.2 UniProtKB/TrEMBL
  ENSSSCT00005007361.1 UniProtKB/TrEMBL
  ENSSSCT00005007413.1 UniProtKB/TrEMBL
  ENSSSCT00005007437.1 UniProtKB/TrEMBL
  ENSSSCT00005007449.1 UniProtKB/TrEMBL
  ENSSSCT00005007468.1 UniProtKB/TrEMBL
  ENSSSCT00005007496.1 UniProtKB/TrEMBL
  ENSSSCT00005007511.1 UniProtKB/TrEMBL
  ENSSSCT00015071203.1 UniProtKB/TrEMBL
  ENSSSCT00025091534.1 UniProtKB/TrEMBL
  ENSSSCT00030021430.1 UniProtKB/TrEMBL
  ENSSSCT00035027081.1 UniProtKB/TrEMBL
  ENSSSCT00040003553.1 UniProtKB/TrEMBL
  ENSSSCT00045028657.1 UniProtKB/TrEMBL
  ENSSSCT00050052817.1 UniProtKB/TrEMBL
  ENSSSCT00055055796.1 UniProtKB/TrEMBL
  ENSSSCT00060072311.1 UniProtKB/TrEMBL
  ENSSSCT00065029060.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.30.500.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/TrEMBL
  MHC_I-like_Ag-recog UniProtKB/TrEMBL
  MHC_I-like_Ag-recog_sf UniProtKB/TrEMBL
  MHC_I/II-like_Ag-recog UniProtKB/TrEMBL
KEGG Report ssc:100038008 UniProtKB/TrEMBL
NCBI Gene CD1E ENTREZGENE
PANTHER MHC CLASS I-RELATED UniProtKB/TrEMBL
  T-CELL SURFACE GLYCOPROTEIN CD1E, MEMBRANE-ASSOCIATED UniProtKB/TrEMBL
Pfam C1-set UniProtKB/TrEMBL
  MHC_I_3 UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc1 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF54452 UniProtKB/TrEMBL
UniProt A0A5G2QN39_PIG UniProtKB/TrEMBL
  A0A5G2RE36 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0HU50_PIG UniProtKB/TrEMBL
  A0A8D0HZY2_PIG UniProtKB/TrEMBL
  A0A8D0I6H7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0LFA1 ENTREZGENE
  A0A8D0P568_PIG UniProtKB/TrEMBL
  A0A8D0T1V6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0YZJ6 ENTREZGENE, UniProtKB/TrEMBL
  A0ZPR6 ENTREZGENE, UniProtKB/TrEMBL
  A0ZQ08 ENTREZGENE, UniProtKB/TrEMBL
  F6PUN6_PIG UniProtKB/TrEMBL
  K7GPP1_PIG UniProtKB/TrEMBL
UniProt Secondary A0A8D0LFA1 UniProtKB/TrEMBL
VGNC ID VGNC:86394 ENTREZGENE