TRADD (TNFRSF1A associated via death domain) - Rat Genome Database

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Gene: TRADD (TNFRSF1A associated via death domain) Sus scrofa
Analyze
Symbol: TRADD
Name: TNFRSF1A associated via death domain
RGD ID: 13872228
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); tumor necrosis factor receptor binding (ortholog); INVOLVED IN extrinsic apoptotic signaling pathway (ortholog); PARTICIPATES IN ceramide signaling pathway; Toll-like receptor signaling pathway; Trail mediated signaling pathway; ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); cataract 5 multiple types (ortholog); genetic disease (ortholog); FOUND IN protein-containing complex (ortholog); INTERACTS WITH fumonisin B1
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tumor necrosis factor receptor type 1-associated DEATH domain protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl627,797,607 - 27,804,423 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1627,797,594 - 27,804,654 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
fumonisin B1  (EXP)

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TRADD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl627,797,607 - 27,804,423 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1627,797,594 - 27,804,654 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TRADD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,154,185 - 67,159,909 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1667,154,185 - 67,159,909 (-)EnsemblGRCh38hg38GRCh38
GRCh371667,188,088 - 67,193,812 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361665,745,589 - 65,751,313 (-)NCBINCBI36Build 36hg18NCBI36
Build 341665,745,604 - 65,747,759NCBI
Celera1651,696,331 - 51,702,055 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,061,605 - 53,067,329 (-)NCBIHuRef
CHM1_11668,595,406 - 68,601,130 (-)NCBICHM1_1
T2T-CHM13v2.01672,948,477 - 72,954,201 (-)NCBIT2T-CHM13v2.0
Tradd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398105,985,207 - 105,991,226 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8105,984,918 - 105,991,241 (-)EnsemblGRCm39 Ensembl
GRCm388105,258,575 - 105,264,594 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,258,286 - 105,264,609 (-)EnsemblGRCm38mm10GRCm38
MGSCv378107,782,475 - 107,788,494 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368108,147,704 - 108,153,723 (-)NCBIMGSCv36mm8
Celera8109,481,639 - 109,487,742 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.04NCBI
Tradd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,046,057 - 50,048,158 (-)NCBIGRCr8
mRatBN7.21933,136,148 - 33,142,714 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,136,138 - 33,142,638 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1939,951,075 - 39,953,176 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01940,604,983 - 40,607,084 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01942,894,707 - 42,896,808 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01937,214,461 - 37,221,099 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,214,471 - 37,216,572 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,081,076 - 48,086,774 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,073,150 - 35,075,251 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11935,078,569 - 35,079,048 (-)NCBI
Celera1932,565,129 - 32,567,230 (-)NCBICelera
Cytogenetic Map19q11NCBI
Tradd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554849,456,301 - 9,462,425 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554849,456,268 - 9,462,425 (+)NCBIChiLan1.0ChiLan1.0
TRADD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21876,683,947 - 76,689,812 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11682,596,528 - 82,602,315 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01647,499,881 - 47,506,220 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11666,888,543 - 66,892,501 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1666,889,006 - 66,891,016 (-)Ensemblpanpan1.1panPan2
TRADD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1582,200,430 - 82,211,430 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl582,206,111 - 82,210,963 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha582,189,185 - 82,200,059 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0582,634,875 - 82,645,756 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl582,634,842 - 82,645,749 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1582,460,961 - 82,471,833 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0582,146,502 - 82,157,169 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0582,785,778 - 82,796,660 (+)NCBIUU_Cfam_GSD_1.0
Tradd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,954,016 - 41,960,812 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647517,628,803 - 17,630,856 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647517,628,297 - 17,634,919 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRADD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1560,296,777 - 60,303,076 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl560,297,375 - 60,303,579 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604723,048,918 - 23,055,198 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tradd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474619,155,113 - 19,165,705 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474619,155,058 - 19,165,702 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TRADD
57 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 10 4 3 4 2 23 2 3 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000046588   ⟹   ENSSSCP00000057975
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl627,797,607 - 27,804,423 (-)Ensembl
RefSeq Acc Id: XM_021094047   ⟹   XP_020949706
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1627,797,594 - 27,804,644 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094048   ⟹   XP_020949707
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1627,797,594 - 27,803,506 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094049   ⟹   XP_020949708
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1627,797,594 - 27,803,523 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094050   ⟹   XP_020949709
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1627,797,594 - 27,804,654 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094051   ⟹   XP_020949710
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1627,797,594 - 27,803,255 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020949709   ⟸   XM_021094050
- UniProtKB: A0A287BPE4 (UniProtKB/TrEMBL),   A0A4X1UQK1 (UniProtKB/TrEMBL),   A0A4X1UP54 (UniProtKB/TrEMBL),   A0A8D1XLU1 (UniProtKB/TrEMBL),   A0A8D0PP52 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949706   ⟸   XM_021094047
- UniProtKB: A0A287BPE4 (UniProtKB/TrEMBL),   A0A4X1UQK1 (UniProtKB/TrEMBL),   A0A4X1UP54 (UniProtKB/TrEMBL),   A0A8D1XLU1 (UniProtKB/TrEMBL),   A0A8D0PP52 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949708   ⟸   XM_021094049
- UniProtKB: A0A287BPE4 (UniProtKB/TrEMBL),   A0A4X1UQK1 (UniProtKB/TrEMBL),   A0A4X1UP54 (UniProtKB/TrEMBL),   A0A8D1XLU1 (UniProtKB/TrEMBL),   A0A8D0PP52 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949707   ⟸   XM_021094048
- UniProtKB: A0A287BPE4 (UniProtKB/TrEMBL),   A0A4X1UQK1 (UniProtKB/TrEMBL),   A0A4X1UP54 (UniProtKB/TrEMBL),   A0A8D1XLU1 (UniProtKB/TrEMBL),   A0A8D0PP52 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020949710   ⟸   XM_021094051
- UniProtKB: A0A287BPE4 (UniProtKB/TrEMBL),   A0A4X1UQK1 (UniProtKB/TrEMBL),   A0A4X1UP54 (UniProtKB/TrEMBL),   A0A8D1XLU1 (UniProtKB/TrEMBL),   A0A8D0PP52 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000057975   ⟸   ENSSSCT00000046588
Protein Domains
Death


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000036321 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005009895 UniProtKB/TrEMBL
  ENSSSCG00015067260 UniProtKB/TrEMBL
  ENSSSCG00025076201 UniProtKB/TrEMBL
  ENSSSCG00030018623 UniProtKB/TrEMBL
  ENSSSCG00035044012 UniProtKB/TrEMBL
  ENSSSCG00040007261 UniProtKB/TrEMBL
  ENSSSCG00045038680 UniProtKB/TrEMBL
  ENSSSCG00050016166 UniProtKB/TrEMBL
  ENSSSCG00055027881 UniProtKB/TrEMBL
  ENSSSCG00060055678 UniProtKB/TrEMBL
  ENSSSCG00065014868 UniProtKB/TrEMBL
  ENSSSCG00070018460 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000046588 ENTREZGENE
  ENSSSCT00000046588.2 UniProtKB/TrEMBL
  ENSSSCT00005015229.1 UniProtKB/TrEMBL
  ENSSSCT00015090104.1 UniProtKB/TrEMBL
  ENSSSCT00015090178.1 UniProtKB/TrEMBL
  ENSSSCT00025105447.1 UniProtKB/TrEMBL
  ENSSSCT00025105461.1 UniProtKB/TrEMBL
  ENSSSCT00030025712.1 UniProtKB/TrEMBL
  ENSSSCT00035058472.1 UniProtKB/TrEMBL
  ENSSSCT00040009533.1 UniProtKB/TrEMBL
  ENSSSCT00045067149.1 UniProtKB/TrEMBL
  ENSSSCT00050021998.1 UniProtKB/TrEMBL
  ENSSSCT00055055175.1 UniProtKB/TrEMBL
  ENSSSCT00060075844.1 UniProtKB/TrEMBL
  ENSSSCT00060075849.1 UniProtKB/TrEMBL
  ENSSSCT00065019773.1 UniProtKB/TrEMBL
  ENSSSCT00065019777.1 UniProtKB/TrEMBL
  ENSSSCT00070036448.1 UniProtKB/TrEMBL
  ENSSSCT00070036455.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.533.10 UniProtKB/TrEMBL
  3.30.70.680 UniProtKB/TrEMBL
InterPro DEATH-like_dom_sf UniProtKB/TrEMBL
  Death_domain UniProtKB/TrEMBL
  TRADD UniProtKB/TrEMBL
  TRADD_N UniProtKB/TrEMBL
  TRADD_N_sf UniProtKB/TrEMBL
NCBI Gene TRADD ENTREZGENE
PANTHER PTHR14913 UniProtKB/TrEMBL
  TUMOR NECROSIS FACTOR RECEPTOR TYPE 1-ASSOCIATED DEATH DOMAIN PROTEIN UniProtKB/TrEMBL
Pfam Death UniProtKB/TrEMBL
  TRADD_N UniProtKB/TrEMBL
PROSITE DEATH_DOMAIN UniProtKB/TrEMBL
SMART DEATH UniProtKB/TrEMBL
Superfamily-SCOP SSF47986 UniProtKB/TrEMBL
  SSF55044 UniProtKB/TrEMBL
UniProt A0A287BPE4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UP54 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UQK1 ENTREZGENE
  A0A8D0PP52 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1XLU1 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1UQK1 UniProtKB/TrEMBL
VGNC ID VGNC:94357 ENTREZGENE