TRADD (Sus scrofa - pig) |
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TRADD (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 16 | 67,154,185 - 67,159,909 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 16 | 67,154,185 - 67,159,909 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 16 | 67,188,088 - 67,193,812 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 16 | 65,745,589 - 65,751,313 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 16 | 65,745,604 - 65,747,759 | NCBI | | | | | Celera | 16 | 51,696,331 - 51,702,055 (-) | NCBI | | Celera | | | Cytogenetic Map | 16 | q22.1 | NCBI | | | | | HuRef | 16 | 53,061,605 - 53,067,329 (-) | NCBI | | HuRef | | | CHM1_1 | 16 | 68,595,406 - 68,601,130 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 16 | 72,948,477 - 72,954,201 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Tradd (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 8 | 105,985,207 - 105,991,226 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 8 | 105,984,918 - 105,991,241 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 8 | 105,258,575 - 105,264,594 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 8 | 105,258,286 - 105,264,609 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 8 | 107,782,475 - 107,788,494 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 8 | 108,147,704 - 108,153,723 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 8 | 109,481,639 - 109,487,742 (-) | NCBI | | Celera | | | Cytogenetic Map | 8 | D3 | NCBI | | | | | cM Map | 8 | 53.04 | NCBI | | | | |
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Tradd (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 19 | 50,046,057 - 50,048,158 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 19 | 33,136,148 - 33,142,714 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 19 | 33,136,138 - 33,142,638 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 19 | 39,951,075 - 39,953,176 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 19 | 40,604,983 - 40,607,084 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 19 | 42,894,707 - 42,896,808 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 19 | 37,214,461 - 37,221,099 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 19 | 37,214,471 - 37,216,572 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 19 | 48,081,076 - 48,086,774 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 19 | 35,073,150 - 35,075,251 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 19 | 35,078,569 - 35,079,048 (-) | NCBI | | | | | Celera | 19 | 32,565,129 - 32,567,230 (-) | NCBI | | Celera | | | Cytogenetic Map | 19 | q11 | NCBI | | | | |
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Tradd (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955484 | 9,456,301 - 9,462,425 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955484 | 9,456,268 - 9,462,425 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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TRADD (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 18 | 76,683,947 - 76,689,812 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 16 | 82,596,528 - 82,602,315 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 16 | 47,499,881 - 47,506,220 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 16 | 66,888,543 - 66,892,501 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 16 | 66,889,006 - 66,891,016 (-) | Ensembl | panpan1.1 | | panPan2 | |
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TRADD (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 5 | 82,200,430 - 82,211,430 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 5 | 82,206,111 - 82,210,963 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 5 | 82,189,185 - 82,200,059 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 5 | 82,634,875 - 82,645,756 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 5 | 82,634,842 - 82,645,749 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 5 | 82,460,961 - 82,471,833 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 5 | 82,146,502 - 82,157,169 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 5 | 82,785,778 - 82,796,660 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Tradd (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024409349 | 41,954,016 - 41,960,812 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936475 | 17,628,803 - 17,630,856 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936475 | 17,628,297 - 17,634,919 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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TRADD (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 5 | 60,296,777 - 60,303,076 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 5 | 60,297,375 - 60,303,579 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666047 | 23,048,918 - 23,055,198 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Tradd (Heterocephalus glaber - naked mole-rat) |
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