TRAPPC3L (trafficking protein particle complex subunit 3L) - Rat Genome Database

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Gene: TRAPPC3L (trafficking protein particle complex subunit 3L) Sus scrofa
Analyze
Symbol: TRAPPC3L
Name: trafficking protein particle complex subunit 3L
RGD ID: 13872018
Description: INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (inferred); Golgi vesicle transport (inferred); intra-Golgi vesicle-mediated transport (inferred); ASSOCIATED WITH body dysmorphic disorder (ortholog); congenital disorder of glycosylation Iaa (ortholog); epilepsy (ortholog); FOUND IN cis-Golgi network membrane (inferred); cytosol (inferred); endoplasmic reticulum (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: trafficking protein particle complex 3 like; trafficking protein particle complex subunit 3-like protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl182,102,134 - 82,144,216 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1182,100,970 - 82,145,418 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2192,355,182 - 92,368,483 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TRAPPC3L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl182,102,134 - 82,144,216 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1182,100,970 - 82,145,418 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2192,355,182 - 92,368,483 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRAPPC3L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386116,494,989 - 116,545,684 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6116,494,989 - 116,545,684 (-)EnsemblGRCh38hg38GRCh38
GRCh376116,816,152 - 116,866,847 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366116,924,445 - 116,973,466 (-)NCBINCBI36Build 36hg18NCBI36
Celera6117,560,713 - 117,609,844 (-)NCBICelera
Cytogenetic Map6q22.1NCBI
HuRef6114,397,502 - 114,446,358 (-)NCBIHuRef
CHM1_16117,081,262 - 117,130,402 (-)NCBICHM1_1
T2T-CHM13v2.06117,678,730 - 117,729,406 (-)NCBIT2T-CHM13v2.0
Trappc3l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391033,913,593 - 33,985,811 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1033,913,593 - 33,985,811 (+)EnsemblGRCm39 Ensembl
GRCm381034,037,597 - 34,109,815 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1034,037,597 - 34,109,815 (+)EnsemblGRCm38mm10GRCm38
MGSCv371033,757,403 - 33,829,621 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1034,947,918 - 35,019,526 (+)NCBICelera
Cytogenetic Map10B1NCBI
cM Map1018.85NCBI
Trappc3l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82026,536,078 - 26,627,648 (+)NCBIGRCr8
mRatBN7.22025,992,835 - 26,084,938 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2025,967,502 - 26,078,989 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.02027,578,268 - 27,664,689 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2027,592,379 - 27,664,595 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02029,405,969 - 29,490,324 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42037,686,628 - 37,766,025 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2027,447,676 - 27,532,831 (+)NCBICelera
Cytogenetic Map20q11NCBI
Trappc3l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955526132,316 - 218,981 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955526120,620 - 217,855 (+)NCBIChiLan1.0ChiLan1.0
TRAPPC3L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25136,507,583 - 136,559,422 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16134,401,606 - 134,452,441 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06114,303,027 - 114,355,958 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16118,449,431 - 118,498,836 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6118,449,441 - 118,498,836 (-)Ensemblpanpan1.1panPan2
TRAPPC3L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1156,922,018 - 56,986,818 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl156,924,057 - 56,958,307 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha157,716,553 - 57,782,108 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0157,103,276 - 57,168,846 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl157,104,997 - 57,168,090 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1156,997,701 - 57,063,253 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0156,845,895 - 56,911,400 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0157,474,839 - 57,539,912 (-)NCBIUU_Cfam_GSD_1.0
Trappc3l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946107,323,651 - 107,365,946 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368241,046,502 - 1,091,218 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368241,048,636 - 1,090,900 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRAPPC3L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11357,263,072 - 57,316,383 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1357,265,724 - 57,315,607 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604029,598,682 - 29,646,129 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trappc3l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248561,871,510 - 1,945,004 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248561,871,510 - 1,945,004 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TRAPPC3L
994 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system hemolymphoid system nervous system respiratory system
High
Medium 1
Low 1 1 1
Below cutoff 3 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000043532   ⟹   ENSSSCP00000050916
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl182,102,134 - 82,144,216 (-)Ensembl
RefSeq Acc Id: XM_021091590   ⟹   XP_020947249
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1182,100,970 - 82,145,418 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020947249   ⟸   XM_021091590
- UniProtKB: A0A4X1V7W6 (UniProtKB/TrEMBL),   A0A287B380 (UniProtKB/TrEMBL),   A0A8D0NC98 (UniProtKB/TrEMBL),   A0A8D1QMA5 (UniProtKB/TrEMBL),   A0A8D1WQH4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000050916   ⟸   ENSSSCT00000043532


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000040660 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005012323 UniProtKB/TrEMBL
  ENSSSCG00015031800 UniProtKB/TrEMBL
  ENSSSCG00025061481 UniProtKB/TrEMBL
  ENSSSCG00030015379 UniProtKB/TrEMBL
  ENSSSCG00035073807 UniProtKB/TrEMBL
  ENSSSCG00040025629 UniProtKB/TrEMBL
  ENSSSCG00045017144 UniProtKB/TrEMBL
  ENSSSCG00050033456 UniProtKB/TrEMBL
  ENSSSCG00055013909 UniProtKB/TrEMBL
  ENSSSCG00060073202 UniProtKB/TrEMBL
  ENSSSCG00065063899 UniProtKB/TrEMBL
  ENSSSCG00070022045 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000043532 ENTREZGENE
  ENSSSCT00000043532.3 UniProtKB/TrEMBL
  ENSSSCT00005019259.1 UniProtKB/TrEMBL
  ENSSSCT00015042116.1 UniProtKB/TrEMBL
  ENSSSCT00025084165.1 UniProtKB/TrEMBL
  ENSSSCT00030021238.1 UniProtKB/TrEMBL
  ENSSSCT00035100091.1 UniProtKB/TrEMBL
  ENSSSCT00040034191.1 UniProtKB/TrEMBL
  ENSSSCT00045029238.1 UniProtKB/TrEMBL
  ENSSSCT00050044819.1 UniProtKB/TrEMBL
  ENSSSCT00055027398.1 UniProtKB/TrEMBL
  ENSSSCT00060100046.1 UniProtKB/TrEMBL
  ENSSSCT00065087707.1 UniProtKB/TrEMBL
  ENSSSCT00070043842.1 UniProtKB/TrEMBL
  ENSSSCT00070043846.1 UniProtKB/TrEMBL
Gene3D-CATH Trafficking protein particle complex subunit 3 UniProtKB/TrEMBL
InterPro Bet3 UniProtKB/TrEMBL
  NO_sig/Golgi_transp_ligand-bd UniProtKB/TrEMBL
  TRAPP_component UniProtKB/TrEMBL
NCBI Gene TRAPPC3L ENTREZGENE
PANTHER PTHR13048 UniProtKB/TrEMBL
  TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3-LIKE PROTEIN UniProtKB/TrEMBL
Pfam TRAPP UniProtKB/TrEMBL
PIRSF TRAPP_I_complex_Bet3 UniProtKB/TrEMBL
Superfamily-SCOP SSF111126 UniProtKB/TrEMBL
UniProt A0A287B380 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V5Q1_PIG UniProtKB/TrEMBL
  A0A4X1V7W6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0NC98 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1QMA5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1WQH4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:94375 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-02-15 TRAPPC3L  trafficking protein particle complex subunit 3L  TRAPPC3L  trafficking protein particle complex 3 like  Symbol and/or name change 19259463 PROVISIONAL