GSC (goosecoid homeobox) - Rat Genome Database

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Gene: GSC (goosecoid homeobox) Sus scrofa
Analyze
Symbol: GSC
Name: goosecoid homeobox
RGD ID: 13870771
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); DNA-binding transcription repressor activity, RNA polymerase II-specific (inferred); INVOLVED IN anatomical structure morphogenesis (ortholog); dorsal/ventral neural tube patterning (ortholog); ear development (ortholog); ASSOCIATED WITH Craniofacial Abnormalities (ortholog); DICER1 syndrome (ortholog); genetic disease (ortholog); FOUND IN nucleus (inferred); transcription regulator complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: GCS; goosecoid protein; homeobox protein goosecoid
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7116,098,327 - 116,101,338 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17116,099,053 - 116,101,153 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27123,231,551 - 123,233,551 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GSC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7116,098,327 - 116,101,338 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17116,099,053 - 116,101,153 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27123,231,551 - 123,233,551 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GSC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381494,768,223 - 94,770,113 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1494,768,223 - 94,770,113 (-)EnsemblGRCh38hg38GRCh38
GRCh371495,234,560 - 95,236,450 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361494,304,313 - 94,306,252 (-)NCBINCBI36Build 36hg18NCBI36
Build 341494,304,312 - 94,306,252NCBI
Celera1475,290,663 - 75,292,602 (-)NCBICelera
Cytogenetic Map14q32.13NCBI
HuRef1475,414,787 - 75,416,726 (-)NCBIHuRef
CHM1_11495,172,977 - 95,174,916 (-)NCBICHM1_1
T2T-CHM13v2.01488,998,287 - 89,000,177 (-)NCBIT2T-CHM13v2.0
Gsc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912104,437,468 - 104,439,495 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12104,437,468 - 104,439,589 (-)EnsemblGRCm39 Ensembl
GRCm3812104,471,209 - 104,473,236 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12104,471,209 - 104,473,330 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712105,709,419 - 105,711,446 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612104,872,259 - 104,874,286 (-)NCBIMGSCv36mm8
Celera12105,702,296 - 105,704,323 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1254.32NCBI
Gsc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86129,152,836 - 129,154,875 (-)NCBIGRCr8
mRatBN7.26123,388,072 - 123,390,111 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6123,388,072 - 123,390,111 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6123,518,906 - 123,520,949 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06123,814,192 - 123,816,235 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06123,185,732 - 123,187,775 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06128,147,181 - 128,149,220 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6128,147,181 - 128,149,220 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06137,350,766 - 137,352,805 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46128,526,645 - 128,528,684 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16128,531,182 - 128,532,078 (-)NCBI
Celera6120,865,501 - 120,867,540 (-)NCBICelera
Cytogenetic Map6q32NCBI
Gsc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543817,653,271 - 17,656,878 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543817,653,149 - 17,655,091 (+)NCBIChiLan1.0ChiLan1.0
GSC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21595,915,666 - 95,917,702 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11495,132,298 - 95,134,186 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01475,390,119 - 75,392,050 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11494,718,269 - 94,720,200 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1494,718,269 - 94,720,404 (-)Ensemblpanpan1.1panPan2
GSC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1863,684,149 - 63,707,030 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl863,684,137 - 63,707,054 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha863,260,674 - 63,283,571 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0863,951,494 - 63,974,354 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl863,951,503 - 63,974,540 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1863,626,364 - 63,649,232 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0863,678,390 - 63,701,298 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0864,009,439 - 64,032,367 (-)NCBIUU_Cfam_GSD_1.0
Gsc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864010,745,355 - 10,747,301 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936846286,420 - 288,405 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936846286,429 - 288,405 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GSC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12472,581,639 - 72,585,745 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2472,581,915 - 72,583,423 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605359,787,503 - 59,789,395 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gsc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247347,367,277 - 7,368,817 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247347,367,030 - 7,369,081 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GSC
34 total Variants

Expression


Sequence


RefSeq Acc Id: ENSSSCT00000002768   ⟹   ENSSSCP00000002699
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl7116,098,327 - 116,101,338 (-)Ensembl
RefSeq Acc Id: XM_003482313   ⟹   XP_003482361
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.17116,099,053 - 116,101,153 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003482361   ⟸   XM_003482313
- UniProtKB: F1SCC4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000002699   ⟸   ENSSSCT00000002768
Protein Domains
Homeobox


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000002490 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015036128 UniProtKB/TrEMBL
  ENSSSCG00025057716 UniProtKB/TrEMBL
  ENSSSCG00030008736 UniProtKB/TrEMBL
  ENSSSCG00035022478 UniProtKB/TrEMBL
  ENSSSCG00040059996 UniProtKB/TrEMBL
  ENSSSCG00045007697 UniProtKB/TrEMBL
  ENSSSCG00050020721 UniProtKB/TrEMBL
  ENSSSCG00055030189 UniProtKB/TrEMBL
  ENSSSCG00060031955 UniProtKB/TrEMBL
  ENSSSCG00065065377 UniProtKB/TrEMBL
  ENSSSCG00070000584 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000002768 ENTREZGENE
  ENSSSCT00000002768.4 UniProtKB/TrEMBL
  ENSSSCT00015047905.1 UniProtKB/TrEMBL
  ENSSSCT00025079002.1 UniProtKB/TrEMBL
  ENSSSCT00030011900.1 UniProtKB/TrEMBL
  ENSSSCT00035029333.1 UniProtKB/TrEMBL
  ENSSSCT00040081584.1 UniProtKB/TrEMBL
  ENSSSCT00045012864.1 UniProtKB/TrEMBL
  ENSSSCT00050027941.1 UniProtKB/TrEMBL
  ENSSSCT00055060060.1 UniProtKB/TrEMBL
  ENSSSCT00060043220.1 UniProtKB/TrEMBL
  ENSSSCT00065089733.1 UniProtKB/TrEMBL
  ENSSSCT00070001086.1 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
KEGG Report ssc:397342 UniProtKB/TrEMBL
NCBI Gene GSC ENTREZGENE
PANTHER HOMEOBOX PROTEIN GOOSECOID UniProtKB/TrEMBL
  HOMEOBOX PROTEIN GOOSECOID-RELATED UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A4X1SFG0_PIG UniProtKB/TrEMBL
  F1SCC4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:88714 ENTREZGENE