ACADVL (acyl-CoA dehydrogenase very long chain) - Rat Genome Database

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Gene: ACADVL (acyl-CoA dehydrogenase very long chain) Sus scrofa
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Symbol: ACADVL
Name: acyl-CoA dehydrogenase very long chain
RGD ID: 13869978
Description: ENCODES a protein that exhibits acyl-CoA dehydrogenase activity (ortholog); fatty-acyl-CoA binding (ortholog); flavin adenine dinucleotide binding (ortholog); INVOLVED IN fatty acid beta-oxidation (ortholog); fatty acid catabolic process (ortholog); response to cold (ortholog); PARTICIPATES IN carnitine palmitoyltransferase I deficiency pathway; ethylmalonic encephalopathy pathway; fatty acid beta degradation pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); autism spectrum disorder (ortholog); Autosomal Dominant Intellectual Developmental Disorder 62 (ortholog); FOUND IN mitochondrial inner membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: very long-chain specific acyl-CoA dehydrogenase, mitochondrial; very-long-chain acyl-CoA dehydrogenase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,576,402 - 52,581,748 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,573,521 - 52,581,755 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23139,851,936 - 139,857,148 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ACADVL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,576,402 - 52,581,748 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,573,521 - 52,581,755 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23139,851,936 - 139,857,148 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ACADVL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,217,125 - 7,225,266 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,217,125 - 7,225,266 (+)EnsemblGRCh38hg38GRCh38
GRCh37177,120,444 - 7,128,585 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,063,877 - 7,069,309 (+)NCBINCBI36Build 36hg18NCBI36
Build 34177,063,956 - 7,069,306NCBI
Celera177,147,787 - 7,153,219 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef177,012,512 - 7,020,576 (+)NCBIHuRef
CHM1_1177,129,209 - 7,137,334 (+)NCBICHM1_1
T2T-CHM13v2.0177,118,036 - 7,126,177 (+)NCBIT2T-CHM13v2.0
Acadvl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,901,009 - 69,906,254 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,901,009 - 69,906,237 (-)EnsemblGRCm39 Ensembl
GRCm381170,010,183 - 70,015,428 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,010,183 - 70,015,411 (-)EnsemblGRCm38mm10GRCm38
MGSCv371169,823,694 - 69,828,909 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361169,826,387 - 69,831,602 (-)NCBIMGSCv36mm8
Celera1177,558,144 - 77,563,359 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.96NCBI
Acadvl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,231,558 - 55,236,786 (-)NCBIGRCr8
mRatBN7.21054,732,875 - 54,738,102 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,732,469 - 54,738,075 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1059,395,021 - 59,400,168 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01058,883,601 - 58,888,748 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01054,390,891 - 54,396,038 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01056,619,321 - 56,624,468 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,619,303 - 56,624,526 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,364,440 - 56,369,587 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,856,233 - 56,861,380 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11056,869,857 - 56,875,003 (-)NCBI
Celera1053,886,459 - 53,891,606 (-)NCBICelera
Cytogenetic Map10q24NCBI
Acadvl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,684,250 - 9,689,356 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,684,070 - 9,689,454 (-)NCBIChiLan1.0ChiLan1.0
ACADVL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21914,812,517 - 14,817,937 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11716,778,578 - 16,783,944 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,249,717 - 7,255,165 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,236,286 - 7,242,417 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,234,283 - 7,242,417 (+)Ensemblpanpan1.1panPan2
ACADVL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,189,191 - 32,194,255 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl532,186,502 - 32,327,990 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,327,393 - 32,332,562 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0532,294,698 - 32,299,874 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl532,292,139 - 32,335,711 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,260,008 - 32,265,180 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,219,055 - 32,224,215 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,395,976 - 32,401,145 (+)NCBIUU_Cfam_GSD_1.0
Acadvl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,040,681 - 47,046,036 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936595514,534 - 520,223 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936595514,883 - 520,223 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACADVL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,593,288 - 6,598,980 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl166,593,287 - 6,598,979 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605914,811,795 - 14,817,522 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acadvl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247869,838,227 - 9,843,332 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247869,838,102 - 9,843,506 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ACADVL
111 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000019531   ⟹   ENSSSCP00000019013
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1252,576,407 - 52,581,748 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000068392   ⟹   ENSSSCP00000068717
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1252,576,402 - 52,581,607 (+)Ensembl
RefSeq Acc Id: XM_003131943   ⟹   XP_003131991
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11252,574,356 - 52,581,755 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005655279   ⟹   XP_005655336
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11252,576,399 - 52,581,755 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021067807   ⟹   XP_020923466
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11252,576,407 - 52,581,755 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021067809   ⟹   XP_020923468
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11252,573,521 - 52,581,755 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020923468   ⟸   XM_021067809
- Peptide Label: isoform X4
- UniProtKB: A0A4X1V0V7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003131991   ⟸   XM_003131943
- Peptide Label: isoform X2
- UniProtKB: A0A4X1V0U7 (UniProtKB/TrEMBL),   A0A0B8RTA8 (UniProtKB/TrEMBL),   A0A480K129 (UniProtKB/TrEMBL),   A0A8D0M5U1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005655336   ⟸   XM_005655279
- Peptide Label: isoform X3
- UniProtKB: A0A8D0SMK4 (UniProtKB/TrEMBL),   F1ST43 (UniProtKB/TrEMBL),   A0A8D0YGQ6 (UniProtKB/TrEMBL),   A0A8D1AVB2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020923466   ⟸   XM_021067807
- Peptide Label: isoform X1
- UniProtKB: A0A5G2R3E4 (UniProtKB/TrEMBL),   A0A8D1Q5Q7 (UniProtKB/TrEMBL),   A0A8D0M714 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000068717   ⟸   ENSSSCT00000068392
Ensembl Acc Id: ENSSSCP00000019013   ⟸   ENSSSCT00000019531

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000017947 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005045124 UniProtKB/TrEMBL
  ENSSSCG00025055821 UniProtKB/TrEMBL
  ENSSSCG00030074972 UniProtKB/TrEMBL
  ENSSSCG00035061744 UniProtKB/TrEMBL
  ENSSSCG00040031968 UniProtKB/TrEMBL
  ENSSSCG00045032349 UniProtKB/TrEMBL
  ENSSSCG00050004419 UniProtKB/TrEMBL
  ENSSSCG00055009568 UniProtKB/TrEMBL
  ENSSSCG00060037823 UniProtKB/TrEMBL
  ENSSSCG00065064100 UniProtKB/TrEMBL
  ENSSSCG00070020884 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000019531 ENTREZGENE
  ENSSSCT00000019531.5 UniProtKB/TrEMBL
  ENSSSCT00000068392 ENTREZGENE
  ENSSSCT00000068392.2 UniProtKB/TrEMBL
  ENSSSCT00005072850.1 UniProtKB/TrEMBL
  ENSSSCT00005072872.1 UniProtKB/TrEMBL
  ENSSSCT00025076622.1 UniProtKB/TrEMBL
  ENSSSCT00030105380.1 UniProtKB/TrEMBL
  ENSSSCT00030105381.1 UniProtKB/TrEMBL
  ENSSSCT00035082956.1 UniProtKB/TrEMBL
  ENSSSCT00035082964.1 UniProtKB/TrEMBL
  ENSSSCT00040043783.1 UniProtKB/TrEMBL
  ENSSSCT00045055819.1 UniProtKB/TrEMBL
  ENSSSCT00045056161.1 UniProtKB/TrEMBL
  ENSSSCT00050006150.1 UniProtKB/TrEMBL
  ENSSSCT00055018931.1 UniProtKB/TrEMBL
  ENSSSCT00055019129.1 UniProtKB/TrEMBL
  ENSSSCT00060051211.1 UniProtKB/TrEMBL
  ENSSSCT00060051231.1 UniProtKB/TrEMBL
  ENSSSCT00065088102.1 UniProtKB/TrEMBL
  ENSSSCT00070041523.1 UniProtKB/TrEMBL
  ENSSSCT00070041539.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.540.10 UniProtKB/TrEMBL
  2.40.110.10 UniProtKB/TrEMBL
  Butyryl-CoA Dehydrogenase, subunit A, domain 3 UniProtKB/TrEMBL
InterPro ACAD9/ACADV-like_C UniProtKB/TrEMBL
  Acyl-CoA_DH_CS UniProtKB/TrEMBL
  Acyl-CoA_Oxase/DH_cen-dom UniProtKB/TrEMBL
  Acyl-CoA_Oxase/DH_mid-dom_sf UniProtKB/TrEMBL
  AcylCo_DH-like_C UniProtKB/TrEMBL
  AcylCo_DH/oxidase_C UniProtKB/TrEMBL
  AcylCoA_DH/ox_N UniProtKB/TrEMBL
  AcylCoA_DH/ox_N_sf UniProtKB/TrEMBL
  AcylCoA_DH/oxidase_NM_dom UniProtKB/TrEMBL
KEGG Report ssc:100520636 UniProtKB/TrEMBL
NCBI Gene ACADVL ENTREZGENE
PANTHER ACYL-COA DEHYDROGENASE UniProtKB/TrEMBL
  VERY LONG-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam ACAD9-ACADV_C UniProtKB/TrEMBL
  Acyl-CoA_dh_1 UniProtKB/TrEMBL
  Acyl-CoA_dh_M UniProtKB/TrEMBL
  Acyl-CoA_dh_N UniProtKB/TrEMBL
PROSITE ACYL_COA_DH_1 UniProtKB/TrEMBL
  ACYL_COA_DH_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF47203 UniProtKB/TrEMBL
  SSF56645 UniProtKB/TrEMBL
UniProt A0A0B8RTA8 ENTREZGENE
  A0A480K129 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V0U7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V0V7 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2R3E4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0M5U1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0M714 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0SMK4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0YF07_PIG UniProtKB/TrEMBL
  A0A8D0YGQ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1AP50_PIG UniProtKB/TrEMBL
  A0A8D1AVB2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1Q5Q7 ENTREZGENE, UniProtKB/TrEMBL
  F1ST43 ENTREZGENE, UniProtKB/TrEMBL
  O62681_PIG UniProtKB/TrEMBL
VGNC ID VGNC:97864 ENTREZGENE