HAP1 (huntingtin associated protein 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: HAP1 (huntingtin associated protein 1) Sus scrofa
Analyze
Symbol: HAP1
Name: huntingtin associated protein 1
RGD ID: 13869485
Description: ENCODES a protein that exhibits brain-derived neurotrophic factor binding (ortholog); identical protein binding (ortholog); ion channel binding (ortholog); INVOLVED IN anterograde axonal transport (ortholog); cellular response to growth factor stimulus (ortholog); negative regulation of amyloid-beta formation (ortholog); ASSOCIATED WITH Dehydration (ortholog); nutrition disease (ortholog); FOUND IN axon terminus (ortholog); centrosome (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: huntingtin-associated protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1220,939,554 - 20,950,051 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11220,938,463 - 20,950,053 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21221,126,539 - 21,137,053 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
HAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1220,939,554 - 20,950,051 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11220,938,463 - 20,950,053 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21221,126,539 - 21,137,053 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1741,717,742 - 41,734,644 (-)EnsemblGRCh38hg38GRCh38
GRCh381741,717,739 - 41,734,646 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371739,873,991 - 39,890,898 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361737,132,417 - 37,144,424 (-)NCBINCBI36hg18NCBI36
Build 341737,132,417 - 37,144,422NCBI
Celera1736,530,004 - 36,542,110 (-)NCBI
Cytogenetic Map17q21.2NCBI
HuRef1735,641,052 - 35,653,084 (-)NCBIHuRef
CHM1_11740,114,361 - 40,126,487 (-)NCBICHM1_1
Hap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911100,238,153 - 100,247,808 (-)NCBIGRCm39mm39
GRCm39 Ensembl11100,238,153 - 100,246,954 (-)Ensembl
GRCm3811100,347,327 - 100,356,982 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11100,347,327 - 100,356,128 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711100,208,641 - 100,217,455 (-)NCBIGRCm37mm9NCBIm37
MGSCv3611100,163,417 - 100,172,177 (-)NCBImm8
Celera11110,964,725 - 110,973,537 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1163.47NCBI
Hap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21085,277,890 - 85,286,126 (-)NCBI
Rnor_6.0 Ensembl1088,257,976 - 88,266,210 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01088,257,975 - 88,266,210 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01088,051,219 - 88,059,478 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41089,285,396 - 89,293,631 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11089,299,766 - 89,308,001 (-)NCBI
Celera1083,995,991 - 84,004,228 (-)NCBICelera
Cytogenetic Map10q31NCBI
HAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11715,797,949 - 15,810,299 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1715,797,949 - 15,810,299 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01715,578,658 - 15,596,313 (+)NCBIMhudiblu_PPA_v0panPan3
HAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1921,065,770 - 21,074,462 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl921,065,846 - 21,072,991 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha920,527,830 - 20,538,544 (+)NCBI
ROS_Cfam_1.0921,786,787 - 21,797,504 (+)NCBI
UMICH_Zoey_3.1920,572,719 - 20,581,302 (+)NCBI
UNSW_CanFamBas_1.0920,838,674 - 20,849,384 (+)NCBI
UU_Cfam_GSD_1.0920,942,632 - 20,951,243 (+)NCBI
Hap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560220,422,813 - 20,430,089 (+)NCBI
SpeTri2.0NW_00493649016,645,116 - 16,652,310 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HAP1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11664,515,013 - 64,524,270 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system respiratory system
High
Medium 1
Low 3 21
Below cutoff 5 2 2 1 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000018973   ⟹   ENSSSCP00000018468
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1220,939,554 - 20,950,051 (+)Ensembl
RefSeq Acc Id: XM_013980964   ⟹   XP_013836418
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11220,938,467 - 20,950,053 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013980966   ⟹   XP_013836420
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11220,938,466 - 20,950,053 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013980967   ⟹   XP_013836421
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11220,938,464 - 20,950,053 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013980968   ⟹   XP_013836422
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11220,940,426 - 20,950,053 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021066998   ⟹   XP_020922657
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11220,938,463 - 20,950,053 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021066999   ⟹   XP_020922658
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11220,938,463 - 20,950,053 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_020922657   ⟸   XM_021066998
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020922658   ⟸   XM_021066999
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013836421   ⟸   XM_013980967
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013836420   ⟸   XM_013980966
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013836418   ⟸   XM_013980964
- Peptide Label: isoform X1
- UniProtKB: F1S0M4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013836422   ⟸   XM_013980968
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSSSCP00000018468   ⟸   ENSSSCT00000018973
Protein Domains
HAP1 N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000017427 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000018468 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000018973 ENTREZGENE, UniProtKB/TrEMBL
InterPro HAP1_N UniProtKB/TrEMBL
KEGG Report ssc:100736934 UniProtKB/TrEMBL
NCBI Gene HAP1 ENTREZGENE
Pfam HAP1_N UniProtKB/TrEMBL
UniProt F1S0M4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:88779 ENTREZGENE