CALU (calumenin) - Rat Genome Database
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Gene: CALU (calumenin) Sus scrofa
Analyze
Symbol: CALU
Name: calumenin
RGD ID: 13869374
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); enzyme binding (ortholog); enzyme inhibitor activity (ortholog); INVOLVED IN peripheral nervous system axon regeneration (ortholog); response to organic cyclic compound (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); colorectal carcinoma (ortholog); Neoplasm Invasiveness (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum lumen (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: crocalbin-like protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1819,841,718 - 19,884,128 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11819,841,718 - 19,875,804 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21820,911,135 - 20,945,220 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:10094503   PMID:14681463  


Genomics

Comparative Map Data
CALU
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1819,841,718 - 19,884,128 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11819,841,718 - 19,875,804 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21820,911,135 - 20,945,220 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CALU
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl7128,739,292 - 128,773,400 (+)EnsemblGRCh38hg38GRCh38
GRCh387128,739,359 - 128,773,400 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh377128,379,346 - 128,413,477 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh377128,379,413 - 128,413,454 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367128,166,672 - 128,198,764 (+)NCBINCBI36hg18NCBI36
Build 347127,973,386 - 128,005,478NCBI
Celera7123,175,101 - 123,207,285 (+)NCBI
Cytogenetic Map7q32.1NCBI
HuRef7122,740,343 - 122,774,461 (+)NCBIHuRef
CHM1_17128,312,626 - 128,346,717 (+)NCBICHM1_1
CRA_TCAGchr7v27127,762,331 - 127,796,461 (+)NCBI
Calu
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39629,348,105 - 29,376,674 (+)NCBIGRCm39mm39
GRCm38629,348,106 - 29,376,675 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl629,348,069 - 29,377,110 (+)EnsemblGRCm38mm10GRCm38
MGSCv37629,298,119 - 29,326,675 (+)NCBIGRCm37mm9NCBIm37
MGSCv36629,298,155 - 29,326,678 (+)NCBImm8
Celera629,355,300 - 29,383,863 (+)NCBICelera
Cytogenetic Map6A3.3NCBI
Calu
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2457,949,086 - 57,976,589 (+)NCBI
Rnor_6.0 Ensembl456,625,561 - 56,653,111 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0456,625,611 - 56,653,112 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0456,392,772 - 56,420,273 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4456,228,617 - 56,256,118 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1456,484,215 - 56,512,241 (+)NCBI
Celera453,057,097 - 53,084,601 (+)NCBICelera
Cytogenetic Map4q22NCBI
Calu
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554799,541,568 - 9,572,266 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554799,541,574 - 9,572,189 (+)NCBIChiLan1.0ChiLan1.0
CALU
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17133,215,235 - 133,247,541 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7133,223,269 - 133,247,167 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v07120,691,092 - 120,723,303 (+)NCBIMhudiblu_PPA_v0panPan3
CALU
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl147,872,076 - 7,925,078 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1147,869,946 - 7,899,302 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Calu
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647915,665,979 - 15,697,016 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CALU
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12197,338,875 - 97,370,947 (+)NCBI
ChlSab1.1 Ensembl2197,338,913 - 97,373,156 (+)Ensembl
Calu
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247837,417,505 - 7,448,711 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000018052   ⟹   ENSSSCP00000017566
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1819,841,732 - 19,875,754 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000048213   ⟹   ENSSSCP00000039725
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1819,841,718 - 19,865,856 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000051908   ⟹   ENSSSCP00000032578
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1819,841,720 - 19,875,737 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000082034   ⟹   ENSSSCP00000060990
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1819,844,101 - 19,884,128 (-)Ensembl
RefSeq Acc Id: XM_003134705   ⟹   XP_003134753
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11819,841,718 - 19,875,800 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003484023   ⟹   XP_003484071
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11819,841,718 - 19,875,804 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079308   ⟹   XP_020934967
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11819,842,580 - 19,875,793 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003134753 (Get FASTA)   NCBI Sequence Viewer  
  XP_003484071 (Get FASTA)   NCBI Sequence Viewer  
  XP_020934967 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF76142 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003484071   ⟸   XM_003484023
- Peptide Label: isoform X1
- UniProtKB: F1SMN1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003134753   ⟸   XM_003134705
- Peptide Label: isoform X2
- UniProtKB: A0A286ZM82 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020934967   ⟸   XM_021079308
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSSSCP00000032578   ⟸   ENSSSCT00000051908
RefSeq Acc Id: ENSSSCP00000039725   ⟸   ENSSSCT00000048213
RefSeq Acc Id: ENSSSCP00000060990   ⟸   ENSSSCT00000082034
RefSeq Acc Id: ENSSSCP00000017566   ⟸   ENSSSCT00000018052
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000016581 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070028122 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000017566 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000032578 UniProtKB/TrEMBL
  ENSSSCP00000039725 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000060990 UniProtKB/TrEMBL
  ENSSSCP00070047959 UniProtKB/TrEMBL
  ENSSSCP00070047961 UniProtKB/TrEMBL
  ENSSSCP00070047962 UniProtKB/TrEMBL
  ENSSSCP00070047964 UniProtKB/TrEMBL
  ENSSSCP00070047965 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000018052 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000048213 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000051908 UniProtKB/TrEMBL
  ENSSSCT00000082034 UniProtKB/TrEMBL
  ENSSSCT00070056440 UniProtKB/TrEMBL
  ENSSSCT00070056445 UniProtKB/TrEMBL
  ENSSSCT00070056448 UniProtKB/TrEMBL
  ENSSSCT00070056452 UniProtKB/TrEMBL
  ENSSSCT00070056455 UniProtKB/TrEMBL
InterPro Calumenin UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
KEGG Report ssc:397301 UniProtKB/TrEMBL
NCBI Gene CALU ENTREZGENE
PANTHER PTHR10827:SF76 UniProtKB/TrEMBL
Pfam EF-hand_5 UniProtKB/TrEMBL
  EF-hand_7 UniProtKB/TrEMBL
  EF-hand_8 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A286ZM82 ENTREZGENE, UniProtKB/TrEMBL
  A0A287A702_PIG UniProtKB/TrEMBL
  A0A480YTG3_PIG UniProtKB/TrEMBL
  A0A4X1W0N3_PIG UniProtKB/TrEMBL
  A0A4X1W1E5_PIG UniProtKB/TrEMBL
  A0A4X1W1Z9_PIG UniProtKB/TrEMBL
  A0A4X1W352_PIG UniProtKB/TrEMBL
  A0A5G2QG35_PIG UniProtKB/TrEMBL
  F1SMN1 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1SMN0 UniProtKB/TrEMBL
VGNC ID VGNC:86151 ENTREZGENE