TNFRSF13B (TNF receptor superfamily member 13B) - Rat Genome Database

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Gene: TNFRSF13B (TNF receptor superfamily member 13B) Sus scrofa
Analyze
Symbol: TNFRSF13B
Name: TNF receptor superfamily member 13B
RGD ID: 13866970
Description: INVOLVED IN B cell homeostasis (ortholog); hematopoietic progenitor cell differentiation (ortholog); negative regulation of B cell proliferation (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); Birt-Hogg-Dube syndrome (ortholog); Brain Injuries (ortholog); FOUND IN external side of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tumor necrosis factor receptor superfamily member 13B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1261,246,062 - 61,270,146 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11261,245,976 - 61,270,154 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TNFRSF13B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1261,246,062 - 61,270,146 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11261,245,976 - 61,270,154 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TNFRSF13B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381716,939,081 - 16,972,118 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1716,929,816 - 16,972,118 (-)EnsemblGRCh38hg38GRCh38
GRCh371716,842,395 - 16,875,432 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361716,783,123 - 16,816,127 (-)NCBINCBI36Build 36hg18NCBI36
Build 341716,783,123 - 16,816,127NCBI
Celera1717,781,944 - 17,814,965 (-)NCBICelera
Cytogenetic Map17p11.2NCBI
HuRef1716,595,403 - 16,628,419 (-)NCBIHuRef
CHM1_11716,852,066 - 16,885,080 (-)NCBICHM1_1
T2T-CHM13v2.01716,885,160 - 16,918,195 (-)NCBIT2T-CHM13v2.0
Tnfrsf13b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391161,017,567 - 61,040,435 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1161,017,581 - 61,040,198 (+)EnsemblGRCm39 Ensembl
GRCm381161,126,283 - 61,153,170 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1161,126,755 - 61,149,372 (+)EnsemblGRCm38mm10GRCm38
MGSCv371160,954,337 - 60,961,144 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361160,957,030 - 60,963,837 (+)NCBIMGSCv36mm8
MGSCv361161,570,527 - 61,577,334 (+)NCBIMGSCv36mm8
Cytogenetic Map11B2NCBI
cM Map1137.96NCBI
Tnfrsf13b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81046,301,336 - 46,322,460 (+)NCBIGRCr8
mRatBN7.21045,801,860 - 45,824,932 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1045,801,860 - 45,822,987 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1050,504,281 - 50,525,515 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01049,994,670 - 50,015,908 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01045,498,240 - 45,519,475 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01047,399,834 - 47,422,907 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1047,412,582 - 47,420,951 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01047,171,786 - 47,193,320 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41047,286,663 - 47,295,026 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1045,052,747 - 45,073,875 (+)NCBICelera
Cytogenetic Map10q22NCBI
Tnfrsf13b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955577930,612 - 971,698 (+)NCBIChiLan1.0ChiLan1.0
TNFRSF13B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21951,456,859 - 51,491,797 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11756,168,541 - 56,203,478 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01734,321,121 - 34,355,020 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11739,252,858 - 39,286,007 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1739,252,858 - 39,292,053 (+)Ensemblpanpan1.1panPan2
TNFRSF13B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1542,448,976 - 42,483,792 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl542,449,053 - 42,482,740 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha542,587,504 - 42,621,275 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0542,556,817 - 42,590,605 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl542,556,902 - 42,590,595 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1542,523,368 - 42,557,148 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0542,470,788 - 42,504,567 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0542,663,264 - 42,698,311 (+)NCBIUU_Cfam_GSD_1.0
Tnfrsf13b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560262,229,931 - 62,240,434 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936741626,814 - 637,317 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNFRSF13B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11615,980,927 - 16,012,572 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1615,981,392 - 15,993,593 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660594,906,206 - 4,937,394 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnfrsf13b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248494,498,388 - 4,511,593 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248494,468,365 - 4,511,891 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TNFRSF13B
514 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 8 2 3 5 1 14 2 3
Below cutoff 2 1 1 9 2

Sequence


RefSeq Acc Id: ENSSSCT00000039082   ⟹   ENSSSCP00000033511
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1261,246,062 - 61,270,146 (+)Ensembl
RefSeq Acc Id: XM_021068044   ⟹   XP_020923703
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11261,245,976 - 61,270,154 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020923703   ⟸   XM_021068044
- UniProtKB: A0A286ZPI2 (UniProtKB/TrEMBL),   A0A4X1SRQ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000033511   ⟸   ENSSSCT00000039082
Protein Domains
TACI cysteine-rich


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000040134 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00025028070 UniProtKB/TrEMBL
  ENSSSCG00030037658 UniProtKB/TrEMBL
  ENSSSCG00035076842 UniProtKB/TrEMBL
  ENSSSCG00045000896 UniProtKB/TrEMBL
  ENSSSCG00050014570 UniProtKB/TrEMBL
  ENSSSCG00055028181 UniProtKB/TrEMBL
  ENSSSCG00060049496 UniProtKB/TrEMBL
  ENSSSCG00065070364 UniProtKB/TrEMBL
  ENSSSCG00070003310 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000039082.3 UniProtKB/TrEMBL
  ENSSSCT00025038100.1 UniProtKB/TrEMBL
  ENSSSCT00030052420.1 UniProtKB/TrEMBL
  ENSSSCT00035104625.1 UniProtKB/TrEMBL
  ENSSSCT00045001304.1 UniProtKB/TrEMBL
  ENSSSCT00050019679.1 UniProtKB/TrEMBL
  ENSSSCT00055055840.1 UniProtKB/TrEMBL
  ENSSSCT00060067191.1 UniProtKB/TrEMBL
  ENSSSCT00065096633.1 UniProtKB/TrEMBL
  ENSSSCT00070006242.1 UniProtKB/TrEMBL
Gene3D-CATH Tumor necrosis factor receptor superfamily UniProtKB/TrEMBL
InterPro TACI_Cys-rich-dom UniProtKB/TrEMBL
  TNFR_13B UniProtKB/TrEMBL
NCBI Gene TNFRSF13B ENTREZGENE
PANTHER PTHR15511 UniProtKB/TrEMBL
  TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 13B UniProtKB/TrEMBL
Pfam TACI-CRD2 UniProtKB/TrEMBL
PRINTS TNFACTORR13B UniProtKB/TrEMBL
Superfamily-SCOP TNF receptor-like UniProtKB/TrEMBL
UniProt A0A286ZPI2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SRQ5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:94259 ENTREZGENE