PVRIG (PVR related immunoglobulin domain containing) - Rat Genome Database

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Gene: PVRIG (PVR related immunoglobulin domain containing) Sus scrofa
Analyze
Symbol: PVRIG
Name: PVR related immunoglobulin domain containing
RGD ID: 13866904
Description: ENCODES a protein that exhibits phosphatase binding (ortholog); INVOLVED IN negative regulation of T cell receptor signaling pathway (inferred); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: poliovirus receptor related immunoglobulin domain containing; transmembrane protein PVRIG
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl38,230,328 - 8,232,836 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.138,230,311 - 8,232,840 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.237,576,673 - 7,579,437 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,ISO)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:30032202  


Genomics

Comparative Map Data
PVRIG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl38,230,328 - 8,232,836 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.138,230,311 - 8,232,840 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.237,576,673 - 7,579,437 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PVRIG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387100,219,248 - 100,221,490 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7100,218,241 - 100,221,490 (+)EnsemblGRCh38hg38GRCh38
GRCh37799,816,871 - 99,819,113 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36799,654,807 - 99,657,047 (+)NCBINCBI36Build 36hg18NCBI36
Celera794,552,220 - 94,554,458 (+)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef794,451,626 - 94,453,866 (+)NCBIHuRef
CHM1_1799,746,940 - 99,749,176 (+)NCBICHM1_1
T2T-CHM13v2.07101,459,061 - 101,461,299 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2799,176,957 - 99,179,197 (+)NCBI
Pvrig
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395138,340,193 - 138,346,953 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5138,340,223 - 138,341,819 (+)EnsemblGRCm39 Ensembl
GRCm385138,341,931 - 138,348,691 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5138,341,961 - 138,343,557 (+)EnsemblGRCm38mm10GRCm38
Celera5135,325,089 - 135,331,893 (+)NCBICelera
Cytogenetic Map5G2NCBI
Pvrig
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81222,474,441 - 22,479,191 (+)NCBIGRCr8
mRatBN7.21217,363,721 - 17,365,577 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1217,364,080 - 17,365,280 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01219,679,671 - 19,681,861 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,680,712 - 19,681,832 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01221,736,342 - 21,737,952 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41217,946,826 - 17,975,559 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1219,286,647 - 19,288,837 (+)NCBICelera
Cytogenetic Map12q11NCBI
Pvrig
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955573592,438 - 595,056 (-)NCBIChiLan1.0ChiLan1.0
PVRIG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26118,139,172 - 118,140,749 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17166,403,658 - 166,405,381 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0792,254,639 - 92,256,592 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17105,687,005 - 105,689,674 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7105,687,005 - 105,689,674 (+)Ensemblpanpan1.1panPan2
PVRIG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.169,314,959 - 9,324,544 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl69,318,163 - 9,319,499 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha611,018,942 - 11,027,224 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.069,248,638 - 9,256,912 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl69,251,549 - 9,253,111 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.169,101,143 - 9,109,421 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.069,078,192 - 9,083,497 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.069,261,175 - 9,269,459 (-)NCBIUU_Cfam_GSD_1.0
Pvrig
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344133,569,938 - 133,570,749 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936543465,781 - 467,150 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PVRIG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12812,843,568 - 12,845,648 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2812,843,811 - 12,845,133 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660703,435,077 - 3,437,743 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in PVRIG
69 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
10 2 3 2 5 7 7 3 1 3

Sequence


Ensembl Acc Id: ENSSSCT00000008396   ⟹   ENSSSCP00000008177
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl38,230,328 - 8,232,836 (+)Ensembl
RefSeq Acc Id: NM_001244699   ⟹   NP_001231628
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.138,230,502 - 8,232,769 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005661897   ⟹   XP_005661954
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.138,230,311 - 8,232,840 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021085659   ⟹   XP_020941318
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.138,230,311 - 8,232,840 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020941318   ⟸   XM_021085659
- Peptide Label: isoform X1
- UniProtKB: F1RNL9 (UniProtKB/TrEMBL),   A0A8D1ZK03 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005661954   ⟸   XM_005661897
- Peptide Label: isoform X1
- UniProtKB: F1RNL9 (UniProtKB/TrEMBL),   A0A8D1ZK03 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001231628   ⟸   NM_001244699
- Peptide Label: precursor
- UniProtKB: A0A4X1UAV3 (UniProtKB/TrEMBL),   A0A8D1G0E2 (UniProtKB/TrEMBL),   A0A8D1ZK03 (UniProtKB/TrEMBL),   A0A8D1BJB2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000008177   ⟸   ENSSSCT00000008396


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000007656 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005001466 UniProtKB/TrEMBL
  ENSSSCG00015038468 UniProtKB/TrEMBL
  ENSSSCG00025016346 UniProtKB/TrEMBL
  ENSSSCG00030009022 UniProtKB/TrEMBL
  ENSSSCG00035079759 UniProtKB/TrEMBL
  ENSSSCG00040073929 UniProtKB/TrEMBL
  ENSSSCG00045015174 UniProtKB/TrEMBL
  ENSSSCG00055025065 UniProtKB/TrEMBL
  ENSSSCG00065064175 UniProtKB/TrEMBL
  ENSSSCG00070015904 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000008396 ENTREZGENE
  ENSSSCT00000008396.4 UniProtKB/TrEMBL
  ENSSSCT00005002106.1 UniProtKB/TrEMBL
  ENSSSCT00005002129.1 UniProtKB/TrEMBL
  ENSSSCT00015051296.1 UniProtKB/TrEMBL
  ENSSSCT00025021993.1 UniProtKB/TrEMBL
  ENSSSCT00030012336.1 UniProtKB/TrEMBL
  ENSSSCT00035109141.1 UniProtKB/TrEMBL
  ENSSSCT00040102170.1 UniProtKB/TrEMBL
  ENSSSCT00045025826.1 UniProtKB/TrEMBL
  ENSSSCT00055049656.1 UniProtKB/TrEMBL
  ENSSSCT00065088115.1 UniProtKB/TrEMBL
  ENSSSCT00070031247.1 UniProtKB/TrEMBL
InterPro TM_PVRIG UniProtKB/TrEMBL
KEGG Report ssc:100512708 UniProtKB/TrEMBL
NCBI Gene PVRIG ENTREZGENE
PANTHER PTHR39220 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN PVRIG UniProtKB/TrEMBL
UniProt A0A4X1UAV3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1BJB2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1G0E2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1ZK03 ENTREZGENE, UniProtKB/TrEMBL
  F1RNL9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:92008 ENTREZGENE