NUDT3 (nudix hydrolase 3) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: NUDT3 (nudix hydrolase 3) Sus scrofa
Analyze
Symbol: NUDT3
Name: nudix hydrolase 3
RGD ID: 13866673
Description: ENCODES a protein that exhibits inositol diphosphate pentakisphosphate diphosphatase activity (ortholog); inositol diphosphate tetrakisphosphate diphosphatase activity (ortholog); magnesium ion binding (ortholog); INVOLVED IN diphosphoinositol polyphosphate catabolic process (ortholog); RNA decapping (ortholog); PARTICIPATES IN inositol phosphate metabolic pathway; FOUND IN cytosol (inferred); ribosome (inferred)
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: diphosphoinositol polyphosphate phosphohydrolase 1; nucleoside diphosphate linked moiety X-type motif 3; nudix; nudix-type motif 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl730,320,307 - 30,443,535 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1730,343,253 - 30,422,019 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2735,003,931 - 35,018,873 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
NUDT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl730,320,307 - 30,443,535 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1730,343,253 - 30,422,019 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2735,003,931 - 35,018,873 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NUDT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl634,279,679 - 34,392,669 (-)EnsemblGRCh38hg38GRCh38
GRCh38634,279,679 - 34,392,669 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37634,247,456 - 34,360,446 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36634,363,975 - 34,468,419 (-)NCBINCBI36hg18NCBI36
Build 34634,363,975 - 34,468,419NCBI
Celera635,810,343 - 35,914,774 (-)NCBI
Cytogenetic Map6p21.31NCBI
HuRef633,977,825 - 34,083,356 (-)NCBIHuRef
CHM1_1634,257,511 - 34,362,976 (-)NCBICHM1_1
Nudt3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391727,798,356 - 27,842,426 (-)NCBIGRCm39mm39
GRCm39 Ensembl1727,798,356 - 27,842,469 (-)Ensembl
GRCm381727,579,382 - 27,623,452 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1727,579,382 - 27,623,495 (-)EnsemblGRCm38mm10GRCm38
MGSCv371727,716,336 - 27,760,397 (-)NCBIGRCm37mm9NCBIm37
MGSCv361727,306,980 - 27,351,041 (-)NCBImm8
Celera1728,131,431 - 28,148,920 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
Nudt3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2205,634,345 - 5,686,950 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl205,634,349 - 5,686,874 (-)Ensembl
Rnor_6.0207,155,744 - 7,208,292 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl207,155,748 - 7,208,292 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0209,358,099 - 9,410,646 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4205,789,033 - 5,841,633 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1205,789,259 - 5,841,860 (-)NCBI
Celera207,197,297 - 7,250,125 (-)NCBICelera
Cytogenetic Map20p12NCBI
Nudt3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554372,504,429 - 2,584,280 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554372,497,720 - 2,584,280 (-)NCBIChiLan1.0ChiLan1.0
NUDT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1634,959,955 - 35,062,853 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl634,959,955 - 35,062,853 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0633,849,695 - 33,961,691 (-)NCBIMhudiblu_PPA_v0panPan3
NUDT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1123,559,347 - 3,687,026 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl123,567,206 - 3,687,026 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha123,583,350 - 3,702,841 (-)NCBI
ROS_Cfam_1.0123,896,243 - 4,023,727 (-)NCBI
UMICH_Zoey_3.1123,566,446 - 3,685,979 (-)NCBI
UNSW_CanFamBas_1.0123,647,695 - 3,767,318 (-)NCBI
UU_Cfam_GSD_1.0123,746,263 - 3,866,214 (-)NCBI
NUDT3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11737,696,307 - 37,804,888 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1737,696,621 - 37,803,344 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604434,166,773 - 34,316,272 (-)NCBIVero_WHO_p1.0
Nudt3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475422,790,378 - 22,873,608 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 6 4 3 5 2 23 2 3 1
Low 4 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000001703   ⟹   ENSSSCP00000001659
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl730,320,307 - 30,443,535 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000056900   ⟹   ENSSSCP00000059107
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl730,343,253 - 30,422,083 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000076003   ⟹   ENSSSCP00000063223
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl730,349,693 - 30,441,603 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000080357   ⟹   ENSSSCP00000063014
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl730,435,664 - 30,441,603 (-)Ensembl
RefSeq Acc Id: NM_001308410   ⟹   NP_001295339
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1730,343,253 - 30,422,019 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001295339 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ADE44106 (Get FASTA)   NCBI Sequence Viewer  
  ADE93011 (Get FASTA)   NCBI Sequence Viewer  
  AKA98158 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001295339   ⟸   NM_001308410
- UniProtKB: A0A0E3KLW5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000001659   ⟸   ENSSSCT00000001703
RefSeq Acc Id: ENSSSCP00000063014   ⟸   ENSSSCT00000080357
RefSeq Acc Id: ENSSSCP00000059107   ⟸   ENSSSCT00000056900
RefSeq Acc Id: ENSSSCP00000063223   ⟸   ENSSSCT00000076003
Protein Domains
Nudix hydrolase   S10_plectin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000031593 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070006746 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000001659 UniProtKB/TrEMBL
  ENSSSCP00000059107 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000063223 UniProtKB/TrEMBL
  ENSSSCP00070010683 UniProtKB/TrEMBL
  ENSSSCP00070010696 UniProtKB/TrEMBL
  ENSSSCP00070010702 UniProtKB/TrEMBL
  ENSSSCP00070010708 UniProtKB/TrEMBL
  ENSSSCP00070010712 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000001703 UniProtKB/TrEMBL
  ENSSSCT00000056900 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000076003 UniProtKB/TrEMBL
  ENSSSCT00070012973 UniProtKB/TrEMBL
  ENSSSCT00070012987 UniProtKB/TrEMBL
  ENSSSCT00070012993 UniProtKB/TrEMBL
  ENSSSCT00070012999 UniProtKB/TrEMBL
  ENSSSCT00070013004 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro NUDIX_hydrolase-like_dom_sf UniProtKB/TrEMBL
  NUDIX_hydrolase_CS UniProtKB/TrEMBL
  NUDIX_hydrolase_dom UniProtKB/TrEMBL
  Rps10 UniProtKB/TrEMBL
  S10_plectin_N UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report ssc:100737442 UniProtKB/TrEMBL
NCBI Gene NUDT3 ENTREZGENE
PANTHER PTHR12146 UniProtKB/TrEMBL
Pfam NUDIX UniProtKB/TrEMBL
  S10_plectin UniProtKB/TrEMBL
PROSITE NUDIX UniProtKB/TrEMBL
  NUDIX_BOX UniProtKB/TrEMBL
Superfamily-SCOP SSF55811 UniProtKB/TrEMBL
UniProt A0A0E3KLW5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1T4G5_PIG UniProtKB/TrEMBL
  A0A4X1T5N2_PIG UniProtKB/TrEMBL
  A0A4X1T5P5_PIG UniProtKB/TrEMBL
  A0A4X1T6X9_PIG UniProtKB/TrEMBL
  A0A4X1T7F7_PIG UniProtKB/TrEMBL
  A0A5G2QG45_PIG UniProtKB/TrEMBL
  D5KJI3_PIG UniProtKB/TrEMBL
  D5KRL6_PIG UniProtKB/TrEMBL
  F1RZ28_PIG UniProtKB/TrEMBL