FSD2 (fibronectin type III and SPRY domain containing 2)

Gene: FSD2 (fibronectin type III and SPRY domain containing 2) Sus scrofa

Analyze

Symbol:

FSD2

Name:

fibronectin type III and SPRY domain containing 2

RGD ID:

13866650

Description:

ASSOCIATED WITH amenorrhea (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

fibronectin type III and SPRY domain-containing protein 2

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	52,144,506 - 52,194,133 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	52,144,469 - 52,194,142 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	57,632,077 - 57,680,567 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amenorrhea (ISO)

Bloom syndrome (ISO)

colorectal cancer (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:27350214

Genomics

Comparative Map Data

FSD2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	52,144,506 - 52,194,133 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	52,144,469 - 52,194,142 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	57,632,077 - 57,680,567 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FSD2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	82,755,362 - 82,806,069 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	82,755,362 - 82,806,070 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	83,424,114 - 83,474,821 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	81,225,078 - 81,271,860 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	15	61,105,821 - 61,152,609 (+)	NCBI		Celera
Cytogenetic Map	15	q25.2	NCBI
HuRef	15	59,697,170 - 59,744,412 (-)	NCBI		HuRef
CHM1_1	15	83,169,822 - 83,216,607 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	80,619,626 - 80,670,359 (-)	NCBI		T2T-CHM13v2.0

Fsd2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	81,184,102 - 81,216,729 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	81,183,056 - 81,216,692 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	81,534,354 - 81,566,981 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	81,533,308 - 81,566,944 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	88,679,240 - 88,711,867 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	81,406,821 - 81,440,457 (-)	NCBI		MGSCv36	mm8
Celera	7	78,940,518 - 78,976,233 (-)	NCBI		Celera
Cytogenetic Map	7	D3	NCBI
cM Map	7	45.71	NCBI

Fsd2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	144,898,499 - 144,931,753 (-)	NCBI		GRCr8
mRatBN7.2	1	135,484,002 - 135,522,517 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	135,489,266 - 135,522,472 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	143,403,994 - 143,432,027 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	150,573,430 - 150,601,465 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	143,486,604 - 143,514,469 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	143,364,867 - 143,398,123 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	143,364,867 - 143,398,093 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	144,308,592 - 144,341,841 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	137,748,690 - 137,776,360 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	137,827,772 - 137,854,766 (-)	NCBI
Celera	1	127,539,992 - 127,567,657 (-)	NCBI		Celera
Cytogenetic Map	1	q31	NCBI

Fsd2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955416	13,852,756 - 13,896,841 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955416	13,864,050 - 13,898,693 (+)	NCBI	ChiLan1.0	ChiLan1.0

FSD2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	73,097,224 - 73,131,865 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	77,257,881 - 77,292,512 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	62,790,477 - 62,842,838 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	80,655,820 - 80,684,861 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	80,657,013 - 80,684,790 (-)	Ensembl	panpan1.1		panPan2

FSD2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	54,580,878 - 54,622,195 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	54,581,923 - 54,605,459 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	57,220,862 - 57,262,957 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	54,999,833 - 55,041,910 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	54,999,246 - 55,041,498 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	54,519,891 - 54,561,652 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	54,728,732 - 54,770,737 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	55,071,232 - 55,113,028 (-)	NCBI		UU_Cfam_GSD_1.0

Fsd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	128,869,279 - 128,914,773 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936483	17,422,102 - 17,451,465 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936483	17,420,009 - 17,465,269 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FSD2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	29	2,848,391 - 2,898,644 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	29	2,867,030 - 2,897,780 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	44,195,802 - 44,243,348 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fsd2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624768	18,535,062 - 18,586,449 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624768	18,533,159 - 18,601,139 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in FSD2
1856 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium		2			2
Low	7	2	3	5		22	1	3	1
Below cutoff	3					1	1		2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021098894	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021098895	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK394586	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CT943649	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU326406	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01126570	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KT832802	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000002022 ⟹ ENSSSCP00000001973

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	7	52,144,506 - 52,194,133 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000068273 ⟹ ENSSSCP00000069350

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	7	52,144,506 - 52,194,133 (+)	Ensembl

RefSeq Acc Id:

XM_021098894 ⟹ XP_020954553

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	7	52,144,469 - 52,194,139 (+)	NCBI

Sequence:

show sequence

CCCTGCCTTTGCTGCCCCACTTGTAGGACTCTGGGGTAGAACAGGCAGGGGCAGCCTGCCGGGC
GTACAGAGGTCACCCAGAGGGAAAGCCTGCTGACCGTGGATGCAGTTTTCTAGTAGTTACCCGG
AGCCTCCGAGTTAAAAGAAAAATGTATGGATCCTTAAATTAGCAGGACCCAGGATATCTATTAA
TAACTGTCCAAAAAGAAACCTTCCTGTGCAGAGGGGCTGCCCCGAGCATCCAGAGCCACGATGG
AAGAGGAAGCAGGTGAGGCCCCGGGGCTGGGCAGGCCCGCTGCTCCTAAGGATTTCCACTTTTA
TCACGTGGATCTGTACGACTCTGAAGACAGACTGCAGATCTTCCCGGAAGGAAACGCTCGGATG
CGAAGAGAGGTAGTCCAGGCTGAAATGACCAACGAACCAAGAGCAGCCGTGAAAGGGAAGGCTC
CGAGAGACCTTGAAGAAGAAGTGGATGAACTTGTCCATCTTTACGGACTTGAAGATGATCATGA
ATTAGGCGATGCATTCGTTGACGAAAGCATGCCCAGAATAGAGGTTTCAGAGTATCCTCCTTAT
GGGATGACGGGGAGAGAAGCAGCCAGGGAGCAGAGAGACTGGAGACTTAGCGGGGAGGAGGCTA
ATGCAGAGGACCTGGGCTTGGGGGGCTGGGGCTCGGCGGACCAGTGCCAGGACTTGCGGGAAGC
CTATAGGTATACCCATGGCCGTGCCAGTGAGGAGTATGAATGCTACGTCATCCCAGAGGAGGAA
GACGAGGATGAAGCTGCGGATGTCTTCTGTGTCACCTGCAAAACACCAGTCAGAGCTTTGGAGG
TTTCTGATGAACACAAGGAACATGAGGTAACCCCACTCCATAAAGCACTGGAAAGCGCCAAGGA
CGAAATTCACAAAAACATGTACAAACTGGAAAAGCAGATTATTGAGATGGAAAATTTTGCAAGT
CACTTGGAGGAGGTTTTCATCACTGTGGAGGAGAATTTTGGAAGACAAGAACAAAACTTTGAGT
CACATTACAATGAGATCTTGGAAACACTTGCTCAAAAATACGAAGAAAAAATACAAGCTCTAGG
GGAGAAAAAGAAAGAGAAGCTAGAAGCCTTGTATGGACAGCTGGTCAGCTGTGGAGAAAATCTT
GATACCTGCAAAGAACTAATGGAAACAATAGAGGAGATGTGTCACGAAGAGAAGGTTGATTTCA
TAAAGGATGCTGTGGCCATGGCTGACAGACTCGGAAAATTCCTGAAAACAAAAACAGATGTTGA
GATCTCGACGCAGCCTGACTTCGACGACCAGACTTTGGACTTTTCTGATGTGGAGCAGCTGATG
GACTCTCTTAACACCATCCCAGCTCCTTCTGCTCCAGTGATAAACCCACAGGCCCCCAACTCCG
CCACAGGTTCCTCGGTCCGAGTGTGCTGGAGCCTATACTCCGATGACACCGTGGAGAGCTATCA
ACTGTCCTACCGGCCAGTGCGGGACAGCTCACCTGAGAAGGACCAAGCAGAGTTTACGATGACC
ATCAAAGAAACATATTGCTCAGTGACAAACCTTGTGCCAAATACCCAGTATGAATTTTGGGTCA
CAGCTCGGAACAGGGCTGGCCTCAGCCCCGCCAGTGAGCGTGCAGTGTACATGACAGCACCTTC
TCCCCCAACCATAAAAAGCAGAGAGATAAGGAGCTGTGAAGAGGCTGCGCTGATCTGCTGGGAG
TCTGGGAACCTGAATCCTGTGGACTCATACACAGTGGAGCTGAGCCAGGCAGAAGCACCGGGAG
CCTCGGGTGTAACTGAGTCTGTTGTGGGCATCCCGACCTGCGAGTGCCTGGTGCAGCTGCAGCC
CCGGCAGAGCTACATCATCTACGTGCGAGCCCTCAACGTGGGGGGCCCCAGTGCTAGGAGCCAG
CCCGCTACGGTCCACACCACAGGCAGCTACTTTCACCTGAATGAGCACACCTGCCATCCCTGGC
TGACCATTTCTGAAGATGGGCTCACAGTTGTACGAAGTGAAAGGAGAGCCCCTGCCAGTGAGCT
GCTCTCCAGCGACACCCGCTTTACCAGGTACATCATCAGCCCCTCACTTGAACAGTGCGTGAAC
CAACACAACCCAGTGTTACTCAGGTGTGTTGCTGTTATGGGAAATCTAATTCCAGTCCGAGGGC
GCCATTACTGGGAAGTGGAGGTGGACGAGTGTTTGGACTACACAGTGGGTGTGGCTTTTGAAGA
TGTCCCTAAACAGGAGGACCTGGGAGCAAACCACCTCTCCTGGTGCATGAGACACACGTTTGCA
TCATCAAGGCATAAATACGAATTTCTACACAACAAGACGACTCCAGACATAAGAATAACGGTTT
CCCCAAAGAAGATTGGCATCCTATTAGACTATGAAAATTCAAAACTGTCATTTTTCAACGTGGG
CCTTTCTCAGCATCTGTACACATTCAGTTGTCAGCTTCACCAATTCGTGCATCCCTGTTTTTCT
CTGGAAAAGCCTGGATGTCTAAAGATACACAATGGCATTTCAATGCCAAAGCATGTCACTTTCT
ATTAGACCACATTCTGATGCCGAGCATCCTCTCTTCGGTACCTACTCCTCTCCCAGCCACTCAC
GCCTCAGCTGGCTGAATTGGGCATCCAAGCCCCGTGCACTAGCATCATTTATGGCTCATGTCAT
TATCTGGCGGACTGGTGTGCTGACATTCACCGCACCTGACCTGGGTCTTGTGCGCTGCCACTTG
TGTGATGCTAGATTAGTCAGTTCCAGGCCCTAATGTAAAATGAAGGCTCAGACTTTCAGGTGGT
CAAACTGTATTGGTCTATTTGTGTACATGCAAAGTACCTGAGTCTCCAAGGCCTGTGGAGCTTG
GGAGAGGAGGAAAGAGAGACGGAAGAGTTAGTGGTTTTAGTCCACTGGTGACATTTCATTAGTC
AGCCAAGAACAGACCTGAGACCGCAAGAGGCCACCCACAAAGAGAACCAGGGAAGCCACGTGGC
CTTGCCTTCTCCTGTTTTGCTAGTGTTAGTGGCACTCCAGTGAGGTTTCTCCCACTGAACACTG
AACACTCTTTCTAACAACTGTTCTTCCCCTTCATAGTACTCACCCCTCTAATTTTGAAATGATC
TTTGTAATGCCTAATTCCATGAAGGCAGGACAGTGTCTGTCTTGTTCGTCACTCAACCACCAAT
GGCTAACACGTGCACACCAAATATTTGTTGAATAAAAGAGCATCTTCTTCAAAAA

hide sequence

RefSeq Acc Id:

XM_021098895 ⟹ XP_020954554

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	7	52,144,471 - 52,194,142 (+)	NCBI

Sequence:

show sequence

CTGCCTTTGCTGCCCCACTTGTAGGACTCTGGGGTAGAACAGGCAGGGGCAGCCTGCCGGGCGT
ACAGAGGTCACCCAGAGGGAAAGCCTGCTGACCGTGGATGCAGTTTTCTAGTAGTTACCCGGAG
CCTCCGAGTTAAAAGAAAAATGTATGGATCCTTAAATTAGCAGGACCCAGGATATCTATTAATA
ACTGTCCAAAAAGAAACCTTCCTGTGCAGAGGGGCTGCCCCGAGCATCCAGAGCCACGATGGAA
GAGGAAGCAGGTGAGGCCCCGGGGCTGGGCAGGCCCGCTGCTCCTAAGGATTTCCACTTTTATC
ACGTGGATCTGTACGACTCTGAAGACAGACTGCAGATCTTCCCGGAAGGAAACGCTCGGATGCG
AAGAGAGGTAGTCCAGGCTGAAATGACCAACGAACCAAGAGCAGCCGTGAAAGGGAAGGCTCCG
AGAGACCTTGAAGAAGAAGTGGATGAACTTGTCCATCTTTACGGACTTGAAGATGATCATGAAT
TAGGCGATGCATTCGTTGACGAAAGCATGCCCAGAATAGAGGTTTCAGAGTATCCTCCTTATGG
GATGACGGGGAGAGAAGCAGCCAGGGAGCAGAGAGACTGGAGACTTAGCGGGGAGGAGGCTAAT
GCAGAGGACCTGGGCTTGGGGGGCTGGGGCTCGGCGGACCAGTGCCAGGACTTGCGGGAAGCCT
ATAGGTATACCCATGGCCGTGCCAGTGAGGAGTATGAATGCTACGTCATCCCAGAGGAGGAAGA
CGAGGATGAAGCTGCGGATGTCTTCTGTGTCACCTGCAAAACACCAGTCAGAGCTTTGGAGGTT
TCTGATGAACACAAGGAACATGAGGTAACCCCACTCCATAAAGCACTGGAAAGCGCCAAGGACG
AAATTCACAAAAACATGTACAAACTGGAAAAGCAGATTATTGAGATGGAAAATTTTGCAAGTCA
CTTGGAGGAGGTTTTCATCACTGTGGAGGAGAATTTTGGAAGACAAGAACAAAACTTTGAGTCA
CATTACAATGAGATCTTGGAAACACTTGCTCAAAAATACGAAGAAAAAATACAAGCTCTAGGGG
AGAAAAAGAAAGAGAAGCTAGAAGCCTTGTATGGACAGCTGGTCAGCTGTGGAGAAAATCTTGA
TACCTGCAAAGAACTAATGGAAACAATAGAGGAGATGTGTCACGAAGAGAAGGTTGATTTCATA
AAGGATGCTGTGGCCATGGCTGACAGACTCGGAAAATTCCTGAAAACAAAAACAGATGTTGAGA
TCTCGACGCAGCCTGACTTCGACGACCAGACTTTGGACTTTTCTGATGTGGAGCAGCTGATGGA
CTCTCTTAACACCATCCCAGCTCCTTCTGCTCCAGTGATAAACCCACAGGCCCCCAACTCCGCC
ACAGGTTCCTCGGTCCGAGTGTGCTGGAGCCTATACTCCGATGACACCGTGGAGAGCTATCAAC
TGTCCTACCGGCCAGTGCGGGACAGCTCACCTGAGAAGGACCAAGCAGAGTTTACGATGACCAT
CAAAGAAACATATTGCTCAGTGACAAACCTTGTGCCAAATACCCAGTATGAATTTTGGGTCACA
GCTCGGAACAGGGCTGGCCTCAGCCCCGCCAGTGAGCGTGCAGTGTACATGACAGCACCTTCTC
CCCCAACCATAAAAAGCAGAGAGATAAGGAGCTGTGAAGAGGCTGCGCTGATCTGCTGGGAGTC
TGGGAACCTGAATCCTGTGGACTCATACACAGTGGAGCTGAGCCAGGCAGAAGCACCGGGAGCC
TCGGGTGTAACTGAGTCTGTTGTGGGCATCCCGACCTGCGAGTGCCTGGTGCAGCTGCAGCCCC
GGCAGAGCTACATCATCTACGTGCGAGCCCTCAACGTGGGGGGCCCCAGTGCTAGGAGCCAGCC
CGCTACGGTCCACACCACAGGCAGCTACTTTCACCTGAATGAGCACACCTGCCATCCCTGGCTG
ACCATTTCTGAAGATGGGCTCACAGTTGTACGAAGTGAAAGGAGAGCCCCTGCCAGTGAGCTGC
TCTCCAGCGACACCCGCTTTACCAGGTGTGTTGCTGTTATGGGAAATCTAATTCCAGTCCGAGG
GCGCCATTACTGGGAAGTGGAGGTGGACGAGTGTTTGGACTACACAGTGGGTGTGGCTTTTGAA
GATGTCCCTAAACAGGAGGACCTGGGAGCAAACCACCTCTCCTGGTGCATGAGACACACGTTTG
CATCATCAAGGCATAAATACGAATTTCTACACAACAAGACGACTCCAGACATAAGAATAACGGT
TTCCCCAAAGAAGATTGGCATCCTATTAGACTATGAAAATTCAAAACTGTCATTTTTCAACGTG
GGCCTTTCTCAGCATCTGTACACATTCAGTTGTCAGCTTCACCAATTCGTGCATCCCTGTTTTT
CTCTGGAAAAGCCTGGATGTCTAAAGATACACAATGGCATTTCAATGCCAAAGCATGTCACTTT
CTATTAGACCACATTCTGATGCCGAGCATCCTCTCTTCGGTACCTACTCCTCTCCCAGCCACTC
ACGCCTCAGCTGGCTGAATTGGGCATCCAAGCCCCGTGCACTAGCATCATTTATGGCTCATGTC
ATTATCTGGCGGACTGGTGTGCTGACATTCACCGCACCTGACCTGGGTCTTGTGCGCTGCCACT
TGTGTGATGCTAGATTAGTCAGTTCCAGGCCCTAATGTAAAATGAAGGCTCAGACTTTCAGGTG
GTCAAACTGTATTGGTCTATTTGTGTACATGCAAAGTACCTGAGTCTCCAAGGCCTGTGGAGCT
TGGGAGAGGAGGAAAGAGAGACGGAAGAGTTAGTGGTTTTAGTCCACTGGTGACATTTCATTAG
TCAGCCAAGAACAGACCTGAGACCGCAAGAGGCCACCCACAAAGAGAACCAGGGAAGCCACGTG
GCCTTGCCTTCTCCTGTTTTGCTAGTGTTAGTGGCACTCCAGTGAGGTTTCTCCCACTGAACAC
TGAACACTCTTTCTAACAACTGTTCTTCCCCTTCATAGTACTCACCCCTCTAATTTTGAAATGA
TCTTTGTAATGCCTAATTCCATGAAGGCAGGACAGTGTCTGTCTTGTTCGTCACTCAACCACCA
ATGGCTAACACGTGCACACCAAATATTTGTTGAATAAAAGAGCATCTTCTTCAAAAAGCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_020954553	(Get FASTA)	NCBI Sequence Viewer
	XP_020954554	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ANQ34438	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000001973
	ENSSSCP00000001973.3
	ENSSSCP00000069350.1
	ENSSSCP00005016955.1
	ENSSSCP00005016971.1
	ENSSSCP00025043737.1
	ENSSSCP00025043812.1
	ENSSSCP00030041190.1
	ENSSSCP00030041194.1
	ENSSSCP00035032947.1
	ENSSSCP00035032963.1
	ENSSSCP00035032972.1
	ENSSSCP00045003778.1
	ENSSSCP00045003782.1
	ENSSSCP00050043008.1
	ENSSSCP00055029625.1
	ENSSSCP00055029729.1
	ENSSSCP00065024252.1
	ENSSSCP00065024255.1
	ENSSSCP00070030024.1
	ENSSSCP00070030027.1

RefSeq Acc Id:	XP_020954553 ⟸ XM_021098894
- Peptide Label:	isoform X1
- UniProtKB:	A0A8D0XWK4 (UniProtKB/TrEMBL), A0A8D1NQU4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEEEAGEAPGLGRPAAPKDFHFYHVDLYDSEDRLQIFPEGNARMRREVVQAEMTNEPRAAVKGK APRDLEEEVDELVHLYGLEDDHELGDAFVDESMPRIEVSEYPPYGMTGREAAREQRDWRLSGEE ANAEDLGLGGWGSADQCQDLREAYRYTHGRASEEYECYVIPEEEDEDEAADVFCVTCKTPVRAL EVSDEHKEHEVTPLHKALESAKDEIHKNMYKLEKQIIEMENFASHLEEVFITVEENFGRQEQNF ESHYNEILETLAQKYEEKIQALGEKKKEKLEALYGQLVSCGENLDTCKELMETIEEMCHEEKVD FIKDAVAMADRLGKFLKTKTDVEISTQPDFDDQTLDFSDVEQLMDSLNTIPAPSAPVINPQAPN SATGSSVRVCWSLYSDDTVESYQLSYRPVRDSSPEKDQAEFTMTIKETYCSVTNLVPNTQYEFW VTARNRAGLSPASERAVYMTAPSPPTIKSREIRSCEEAALICWESGNLNPVDSYTVELSQAEAP GASGVTESVVGIPTCECLVQLQPRQSYIIYVRALNVGGPSARSQPATVHTTGSYFHLNEHTCHP WLTISEDGLTVVRSERRAPASELLSSDTRFTRYIISPSLEQCVNQHNPVLLRCVAVMGNLIPVR GRHYWEVEVDECLDYTVGVAFEDVPKQEDLGANHLSWCMRHTFASSRHKYEFLHNKTTPDIRIT VSPKKIGILLDYENSKLSFFNVGLSQHLYTFSCQLHQFVHPCFSLEKPGCLKIHNGISMPKHVT FY hide sequence

RefSeq Acc Id:	XP_020954554 ⟸ XM_021098895
- Peptide Label:	isoform X2
- UniProtKB:	A0A8D1R5I2 (UniProtKB/TrEMBL), F1RI98 (UniProtKB/TrEMBL), A0A8D0XWK4 (UniProtKB/TrEMBL), A0A8D1NQU4 (UniProtKB/TrEMBL), A0A8D0J1F4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEEEAGEAPGLGRPAAPKDFHFYHVDLYDSEDRLQIFPEGNARMRREVVQAEMTNEPRAAVKGK APRDLEEEVDELVHLYGLEDDHELGDAFVDESMPRIEVSEYPPYGMTGREAAREQRDWRLSGEE ANAEDLGLGGWGSADQCQDLREAYRYTHGRASEEYECYVIPEEEDEDEAADVFCVTCKTPVRAL EVSDEHKEHEVTPLHKALESAKDEIHKNMYKLEKQIIEMENFASHLEEVFITVEENFGRQEQNF ESHYNEILETLAQKYEEKIQALGEKKKEKLEALYGQLVSCGENLDTCKELMETIEEMCHEEKVD FIKDAVAMADRLGKFLKTKTDVEISTQPDFDDQTLDFSDVEQLMDSLNTIPAPSAPVINPQAPN SATGSSVRVCWSLYSDDTVESYQLSYRPVRDSSPEKDQAEFTMTIKETYCSVTNLVPNTQYEFW VTARNRAGLSPASERAVYMTAPSPPTIKSREIRSCEEAALICWESGNLNPVDSYTVELSQAEAP GASGVTESVVGIPTCECLVQLQPRQSYIIYVRALNVGGPSARSQPATVHTTGSYFHLNEHTCHP WLTISEDGLTVVRSERRAPASELLSSDTRFTRCVAVMGNLIPVRGRHYWEVEVDECLDYTVGVA FEDVPKQEDLGANHLSWCMRHTFASSRHKYEFLHNKTTPDIRITVSPKKIGILLDYENSKLSFF NVGLSQHLYTFSCQLHQFVHPCFSLEKPGCLKIHNGISMPKHVTFY hide sequence

RefSeq Acc Id:

ENSSSCP00000069350 ⟸ ENSSSCT00000068273

RefSeq Acc Id:

ENSSSCP00000001973 ⟸ ENSSSCT00000002022

Protein Domains

B30.2/SPRY Fibronectin type-III

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000001806	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005017558	UniProtKB/TrEMBL
	ENSSSCG00025072300	UniProtKB/TrEMBL
	ENSSSCG00030063743	UniProtKB/TrEMBL
	ENSSSCG00035059671	UniProtKB/TrEMBL
	ENSSSCG00045003456	UniProtKB/TrEMBL
	ENSSSCG00050072815	UniProtKB/TrEMBL
	ENSSSCG00055019063	UniProtKB/TrEMBL
	ENSSSCG00065040809	UniProtKB/TrEMBL
	ENSSSCG00070018203	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000002022	ENTREZGENE
	ENSSSCT00000002022.5	UniProtKB/TrEMBL
	ENSSSCT00000068273.2	UniProtKB/TrEMBL
	ENSSSCT00005027834.1	UniProtKB/TrEMBL
	ENSSSCT00005027859.1	UniProtKB/TrEMBL
	ENSSSCT00025099379.1	UniProtKB/TrEMBL
	ENSSSCT00025099492.1	UniProtKB/TrEMBL
	ENSSSCT00030089191.1	UniProtKB/TrEMBL
	ENSSSCT00030089203.1	UniProtKB/TrEMBL
	ENSSSCT00035080026.1	UniProtKB/TrEMBL
	ENSSSCT00035080056.1	UniProtKB/TrEMBL
	ENSSSCT00035080069.1	UniProtKB/TrEMBL
	ENSSSCT00045005650.1	UniProtKB/TrEMBL
	ENSSSCT00045005655.1	UniProtKB/TrEMBL
	ENSSSCT00050099434.1	UniProtKB/TrEMBL
	ENSSSCT00055037289.1	UniProtKB/TrEMBL
	ENSSSCT00055037407.1	UniProtKB/TrEMBL
	ENSSSCT00065055794.1	UniProtKB/TrEMBL
	ENSSSCT00065055800.1	UniProtKB/TrEMBL
	ENSSSCT00070035942.1	UniProtKB/TrEMBL
	ENSSSCT00070035945.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.920	UniProtKB/TrEMBL
	2.60.40.10	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	B30.2/SPRY	UniProtKB/TrEMBL
	B30.2/SPRY_sf	UniProtKB/TrEMBL
	Butyrophylin_SPRY	UniProtKB/TrEMBL
	ConA-like_dom_sf	UniProtKB/TrEMBL
	FN3_dom	UniProtKB/TrEMBL
	FN3_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	SPRY_dom	UniProtKB/TrEMBL
NCBI Gene	FSD2	ENTREZGENE
PANTHER	E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED	UniProtKB/TrEMBL
	FIBRONECTIN TYPE III AND SPRY DOMAIN-CONTAINING PROTEIN 2	UniProtKB/TrEMBL
Pfam	fn3	UniProtKB/TrEMBL
	SPRY	UniProtKB/TrEMBL
PRINTS	BUTYPHLNCDUF	UniProtKB/TrEMBL
PROSITE	B302_SPRY	UniProtKB/TrEMBL
	FN3	UniProtKB/TrEMBL
SMART	FN3	UniProtKB/TrEMBL
	SPRY	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49265	UniProtKB/TrEMBL
	SSF49899	UniProtKB/TrEMBL
UniProt	A0A1B1EZX2_PIG	UniProtKB/TrEMBL
	A0A4X1UMY4_PIG	UniProtKB/TrEMBL
	A0A4X1UPA6_PIG	UniProtKB/TrEMBL
	A0A8D0IPA6_PIG	UniProtKB/TrEMBL
	A0A8D0J1F4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0XWK4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1AEJ4_PIG	UniProtKB/TrEMBL
	A0A8D1ALU8_PIG	UniProtKB/TrEMBL
	A0A8D1APQ7_PIG	UniProtKB/TrEMBL
	A0A8D1CFJ7_PIG	UniProtKB/TrEMBL
	A0A8D1NQU4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1R236_PIG	UniProtKB/TrEMBL
	A0A8D1R5I2	ENTREZGENE
	F1RI98	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A5G2R598	UniProtKB/TrEMBL
	A0A8D1R5I2	UniProtKB/TrEMBL
VGNC ID	VGNC:88253	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar