LOC100156766 (olfactory receptor 4F3/4F16/4F29) - Rat Genome Database

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Pathways
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Gene: LOC100156766 (olfactory receptor 4F3/4F16/4F29) Sus scrofa
Analyze
Symbol: LOC100156766
Name: olfactory receptor 4F3/4F16/4F29
RGD ID: 13866437
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1779,568,026 - 79,569,101 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2784,692,359 - 84,693,309 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC100156766
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1779,568,026 - 79,569,101 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2784,692,359 - 84,693,309 (-)NCBISscrofa10.2Sscrofa10.2susScr3
OR4F21
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388166,086 - 167,024 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8166,086 - 167,024 (-)EnsemblGRCh38hg38GRCh38
GRCh378116,086 - 117,024 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368106,086 - 107,024 (-)NCBINCBI36Build 36hg18NCBI36
Build 348106,085 - 107,024NCBI
Cytogenetic Map8p23.3NCBI
CHM1_18115,901 - 116,839 (-)NCBICHM1_1
T2T-CHM13v2.011113,128 - 114,065 (-)NCBIT2T-CHM13v2.0
Or4f7c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83118,913,402 - 118,914,340 (-)NCBIGRCr8
mRatBN7.2398,458,889 - 98,459,827 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl398,457,871 - 98,464,794 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3102,034,716 - 102,035,654 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03110,633,720 - 110,634,658 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03108,381,463 - 108,382,401 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03103,065,454 - 103,066,392 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3103,065,454 - 103,066,392 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03109,657,494 - 109,658,432 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4397,447,580 - 97,448,518 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1397,344,007 - 97,344,946 (-)NCBI
Celera397,461,224 - 97,461,805 (-)NCBICelera
Cytogenetic Map3q34NCBI

Variants

.
Variants in LOC100156766
70 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_001927926   ⟹   XP_001927961
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1779,568,026 - 79,569,101 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_001927961 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000062286
  ENSSSCP00000062286.1
Reference Protein Sequences
RefSeq Acc Id: XP_001927961   ⟸   XM_001927926
- UniProtKB: A0A5G2QCI1 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000060828 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000070040 ENTREZGENE
  ENSSSCT00000070040.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene LOC100156766 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 4F21-RELATED UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A5G2QCI1 ENTREZGENE, UniProtKB/TrEMBL