TMEM19 (transmembrane protein 19) - Rat Genome Database

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Gene: TMEM19 (transmembrane protein 19) Sus scrofa
Analyze
Symbol: TMEM19
Name: transmembrane protein 19
RGD ID: 13864818
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl535,692,309 - 35,719,346 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1535,691,997 - 35,717,916 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2538,393,230 - 38,419,032 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TMEM19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl535,692,309 - 35,719,346 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1535,691,997 - 35,717,916 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2538,393,230 - 38,419,032 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381271,686,082 - 71,705,047 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1271,686,082 - 71,705,047 (+)EnsemblGRCh38hg38GRCh38
GRCh371272,079,862 - 72,098,827 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361270,366,145 - 70,384,107 (+)NCBINCBI36Build 36hg18NCBI36
Build 341270,366,144 - 70,383,234NCBI
Celera1271,742,079 - 71,760,004 (+)NCBICelera
Cytogenetic Map12q21.1NCBI
HuRef1269,128,934 - 69,146,872 (+)NCBIHuRef
CHM1_11272,047,111 - 72,065,016 (+)NCBICHM1_1
T2T-CHM13v2.01271,663,584 - 71,682,554 (+)NCBIT2T-CHM13v2.0
Tmem19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910115,176,644 - 115,198,406 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10115,175,579 - 115,198,406 (-)EnsemblGRCm39 Ensembl
GRCm3810115,340,739 - 115,362,522 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10115,339,674 - 115,362,501 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710114,777,795 - 114,799,318 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610114,744,849 - 114,766,372 (-)NCBIMGSCv36mm8
Celera10117,270,159 - 117,291,659 (-)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1063.51NCBI
Tmem19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8752,844,985 - 52,871,708 (-)NCBIGRCr8
mRatBN7.2750,958,884 - 50,985,601 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl750,958,888 - 50,986,809 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx752,865,655 - 52,892,072 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0755,068,740 - 55,095,157 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0754,846,727 - 54,873,149 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0758,316,583 - 58,343,761 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl758,316,514 - 58,343,145 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0758,325,485 - 58,352,322 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4754,606,463 - 54,632,803 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1754,627,096 - 54,653,436 (-)NCBI
Celera747,751,159 - 47,777,339 (-)NCBICelera
Cytogenetic Map7q22NCBI
Tmem19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540511,664,676 - 11,682,531 (+)NCBIChiLan1.0ChiLan1.0
TMEM19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21079,714,967 - 79,733,018 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11279,711,374 - 79,729,417 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01269,209,523 - 69,227,547 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11272,068,987 - 72,086,985 (+)NCBIpanpan1.1PanPan1.1panPan2
TMEM19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11013,232,822 - 13,251,847 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1013,172,578 - 13,191,329 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01013,368,142 - 13,387,096 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1013,368,028 - 13,462,394 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11013,231,710 - 13,250,393 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01013,479,283 - 13,497,994 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01013,603,047 - 13,621,801 (+)NCBIUU_Cfam_GSD_1.0
LOC101968645
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494544,958,507 - 44,997,359 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936568747,810 - 770,902 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_004936568731,218 - 745,493 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936568748,020 - 769,813 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11167,302,219 - 67,318,567 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1167,302,175 - 67,317,347 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037178,334,336 - 178,352,498 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475026,056,525 - 26,079,423 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475026,060,254 - 26,079,712 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TMEM19
536 total Variants

Expression


Sequence


RefSeq Acc Id: ENSSSCT00000000549   ⟹   ENSSSCP00000000539
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl535,692,342 - 35,719,638 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000041553   ⟹   ENSSSCP00000045564
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl535,692,355 - 35,730,608 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000044613   ⟹   ENSSSCP00000052357
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl535,692,309 - 35,719,346 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000056108   ⟹   ENSSSCP00000038819
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl535,757,298 - 35,787,658 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000058987   ⟹   ENSSSCP00000054478
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl535,692,312 - 35,787,655 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000081690   ⟹   ENSSSCP00000066239
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl535,692,312 - 35,787,655 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000089229   ⟹   ENSSSCP00000063091
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl535,692,313 - 35,752,022 (+)Ensembl
RefSeq Acc Id: XM_003126376   ⟹   XP_003126424
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1535,691,997 - 35,717,916 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003126424   ⟸   XM_003126376
- UniProtKB: A0A287B8E7 (UniProtKB/TrEMBL),   A0A8D0MPK2 (UniProtKB/TrEMBL),   A0A8D1G708 (UniProtKB/TrEMBL),   A0A8D0VUL2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000000539   ⟸   ENSSSCT00000000549
RefSeq Acc Id: ENSSSCP00000054478   ⟸   ENSSSCT00000058987
RefSeq Acc Id: ENSSSCP00000052357   ⟸   ENSSSCT00000044613
RefSeq Acc Id: ENSSSCP00000063091   ⟸   ENSSSCT00000089229
RefSeq Acc Id: ENSSSCP00000045564   ⟸   ENSSSCT00000041553
RefSeq Acc Id: ENSSSCP00000038819   ⟸   ENSSSCT00000056108
RefSeq Acc Id: ENSSSCP00000066239   ⟸   ENSSSCT00000081690


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000000510 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005022866 UniProtKB/TrEMBL
  ENSSSCG00015013189 UniProtKB/TrEMBL
  ENSSSCG00025050556 UniProtKB/TrEMBL
  ENSSSCG00030018910 UniProtKB/TrEMBL
  ENSSSCG00035005891 UniProtKB/TrEMBL
  ENSSSCG00040075229 UniProtKB/TrEMBL
  ENSSSCG00045010361 UniProtKB/TrEMBL
  ENSSSCG00050029569 UniProtKB/TrEMBL
  ENSSSCG00060051598 UniProtKB/TrEMBL
  ENSSSCG00065076076 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000044613 ENTREZGENE
  ENSSSCT00000044613.3 UniProtKB/TrEMBL
  ENSSSCT00005036135.1 UniProtKB/TrEMBL
  ENSSSCT00015017625.1 UniProtKB/TrEMBL
  ENSSSCT00025069130.1 UniProtKB/TrEMBL
  ENSSSCT00030026110.1 UniProtKB/TrEMBL
  ENSSSCT00035007371.1 UniProtKB/TrEMBL
  ENSSSCT00040104269.1 UniProtKB/TrEMBL
  ENSSSCT00045017578.1 UniProtKB/TrEMBL
  ENSSSCT00050039792.1 UniProtKB/TrEMBL
  ENSSSCT00060070242.1 UniProtKB/TrEMBL
  ENSSSCT00065105063.1 UniProtKB/TrEMBL
InterPro DUF92_TMEM19 UniProtKB/TrEMBL
KEGG Report ssc:100519775 UniProtKB/TrEMBL
NCBI Gene TMEM19 ENTREZGENE
PANTHER PTHR13353 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 19 UniProtKB/TrEMBL
Pfam DUF92 UniProtKB/TrEMBL
UniProt A0A287B8E7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0MPK2 ENTREZGENE
  A0A8D0VUL2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1G708 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A8D0MPK2 UniProtKB/TrEMBL
VGNC ID VGNC:94124 ENTREZGENE