ITPKC (inositol-trisphosphate 3-kinase C) - Rat Genome Database

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Gene: ITPKC (inositol-trisphosphate 3-kinase C) Sus scrofa
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Symbol: ITPKC
Name: inositol-trisphosphate 3-kinase C
RGD ID: 13864459
Description: ENCODES a protein that exhibits kinase activity (ortholog); INVOLVED IN phosphorylation (inferred); ASSOCIATED WITH coronary aneurysm (ortholog); Kawasaki disease (ortholog); FOUND IN nuclear speck (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl648,942,974 - 48,961,438 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1648,943,207 - 48,962,101 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2644,627,778 - 44,646,058 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)
nuclear speck  (ISO)
nucleus  (IBA)

Molecular Function

References

Genomics

Comparative Map Data
ITPKC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl648,942,974 - 48,961,438 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1648,943,207 - 48,962,101 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2644,627,778 - 44,646,058 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ITPKC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1940,717,112 - 40,740,860 (+)EnsemblGRCh38hg38GRCh38
GRCh381940,717,112 - 40,740,860 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371941,223,017 - 41,246,765 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361945,914,848 - 45,938,605 (+)NCBINCBI36hg18NCBI36
Build 341945,914,847 - 45,938,603NCBI
Celera1938,023,433 - 38,047,190 (+)NCBI
Cytogenetic Map19q13.2NCBI
HuRef1937,656,377 - 37,680,128 (+)NCBIHuRef
CHM1_11941,222,687 - 41,246,445 (+)NCBICHM1_1
Itpkc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39726,906,595 - 26,928,042 (-)NCBIGRCm39mm39
GRCm39 Ensembl726,906,597 - 26,928,086 (-)Ensembl
GRCm38727,207,170 - 27,228,617 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl727,207,172 - 27,228,661 (-)EnsemblGRCm38mm10GRCm38
MGSCv37727,992,189 - 28,013,616 (-)NCBIGRCm37mm9NCBIm37
MGSCv36726,915,930 - 26,937,357 (-)NCBImm8
Celera721,784,090 - 21,805,517 (-)NCBICelera
Cytogenetic Map7A3NCBI
Itpkc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2182,500,957 - 82,522,533 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl182,500,957 - 82,522,779 (-)Ensembl
Rnor_6.0184,018,857 - 84,040,433 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl184,018,859 - 84,040,433 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0185,229,796 - 85,251,373 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4182,284,846 - 82,306,422 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1182,362,958 - 82,384,779 (-)NCBI
Celera176,913,801 - 76,935,408 (-)NCBICelera
Cytogenetic Map1q21NCBI
Itpkc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955578598,351 - 614,081 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955578597,105 - 614,081 (-)NCBIChiLan1.0ChiLan1.0
ITPKC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11946,267,598 - 46,292,236 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1946,267,754 - 46,290,935 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01937,761,221 - 37,785,118 (+)NCBIMhudiblu_PPA_v0panPan3
ITPKC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11113,037,833 - 113,053,877 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1113,039,093 - 113,053,738 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1112,440,273 - 112,456,324 (-)NCBI
ROS_Cfam_1.01113,636,482 - 113,652,541 (-)NCBI
UMICH_Zoey_3.11113,196,051 - 113,212,102 (-)NCBI
UNSW_CanFamBas_1.01112,827,654 - 112,843,748 (-)NCBI
UU_Cfam_GSD_1.01113,821,972 - 113,838,031 (-)NCBI
Itpkc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934914,578,574 - 14,594,784 (+)NCBI
SpeTri2.0NW_0049366613,006,506 - 3,023,355 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
Itpkc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624925645,528 - 663,768 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 9 4 3 5 2 22 2 2 3
Below cutoff 1 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000003332   ⟹   ENSSSCP00000003250
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl648,942,974 - 48,961,438 (+)Ensembl
RefSeq Acc Id: XM_003127148   ⟹   XP_003127196
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1648,943,207 - 48,962,101 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003127196 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003127196   ⟸   XM_003127148
- Sequence:
RefSeq Acc Id: ENSSSCP00000003250   ⟸   ENSSSCT00000003332


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003000 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000003250 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000003332 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.10.510.50 UniProtKB/TrEMBL
InterPro IPK UniProtKB/TrEMBL
  IPK_sf UniProtKB/TrEMBL
NCBI Gene ITPKC ENTREZGENE
PANTHER PTHR12400 UniProtKB/TrEMBL
Pfam IPK UniProtKB/TrEMBL
UniProt F1RHA5_PIG UniProtKB/TrEMBL
VGNC ID VGNC:89252 ENTREZGENE