SOS1 (SOS Ras/Rac guanine nucleotide exchange factor 1) - Rat Genome Database

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Gene: SOS1 (SOS Ras/Rac guanine nucleotide exchange factor 1) Sus scrofa
Analyze
Symbol: SOS1
Name: SOS Ras/Rac guanine nucleotide exchange factor 1
RGD ID: 13864428
Description: ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); SH3 domain binding (ortholog); INVOLVED IN B cell homeostasis (ortholog); blood vessel morphogenesis (ortholog); cardiac atrium morphogenesis (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; erythropoietin signaling pathway; Fc epsilon receptor mediated signaling pathway; ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); atrial heart septal defect (ortholog); Atrial Septal Defect, Secundum Type (ortholog); FOUND IN GTPase complex (ortholog); neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: son of sevenless homolog 1; Son of sevenless-like 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3101,209,641 - 101,362,723 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13101,209,568 - 101,366,057 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23107,318,421 - 107,466,093 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SOS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3101,209,641 - 101,362,723 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13101,209,568 - 101,366,057 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23107,318,421 - 107,466,093 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SOS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38238,981,549 - 39,124,868 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl238,962,206 - 39,124,345 (-)EnsemblGRCh38hg38GRCh38
GRCh37239,208,690 - 39,352,009 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36239,066,469 - 39,201,067 (-)NCBINCBI36Build 36hg18NCBI36
Build 34239,124,615 - 39,259,214NCBI
Celera239,049,411 - 39,188,687 (-)NCBICelera
Cytogenetic Map2p22.1NCBI
HuRef238,947,128 - 39,086,120 (-)NCBIHuRef
CHM1_1239,139,128 - 39,278,182 (-)NCBICHM1_1
T2T-CHM13v2.0238,990,066 - 39,133,839 (-)NCBIT2T-CHM13v2.0
Sos1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391780,701,181 - 80,787,882 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1780,701,180 - 80,787,882 (-)EnsemblGRCm39 Ensembl
GRCm381780,393,752 - 80,480,453 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1780,393,751 - 80,480,453 (-)EnsemblGRCm38mm10GRCm38
MGSCv371780,793,092 - 80,879,793 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361780,305,779 - 80,388,265 (-)NCBIMGSCv36mm8
Celera1784,712,016 - 84,797,777 (-)NCBICelera
Cytogenetic Map17E3NCBI
cM Map1750.67NCBI
Sos1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8620,286,117 - 20,363,350 (+)NCBIGRCr8
mRatBN7.2614,533,870 - 14,613,348 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl614,533,360 - 14,611,107 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx614,832,784 - 14,910,104 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0615,154,472 - 15,231,727 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0614,650,751 - 14,727,998 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.063,105,443 - 3,182,977 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl63,104,861 - 3,182,996 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.063,082,456 - 3,159,445 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.463,308,778 - 3,390,661 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.163,310,822 - 3,394,313 (-)NCBI
Celera614,210,655 - 14,287,471 (+)NCBICelera
Cytogenetic Map6q12NCBI
Sos1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554416,646,385 - 6,713,028 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554416,649,895 - 6,724,271 (-)NCBIChiLan1.0ChiLan1.0
SOS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21287,342,622 - 87,487,223 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A87,346,597 - 87,488,030 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A39,019,046 - 39,162,248 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A39,773,758 - 39,911,964 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A39,773,760 - 39,911,961 (-)Ensemblpanpan1.1panPan2
SOS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11731,007,940 - 31,181,569 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1731,009,257 - 31,142,063 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1730,825,007 - 30,830,255 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01731,664,627 - 31,805,012 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1731,664,631 - 31,805,021 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11730,886,361 - 31,025,725 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01730,956,021 - 31,095,889 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01731,169,723 - 31,309,388 (-)NCBIUU_Cfam_GSD_1.0
Sos1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629240,733,944 - 40,853,206 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650812,162,547 - 12,281,820 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650812,162,553 - 12,281,812 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SOS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11468,259,509 - 68,404,167 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1468,259,360 - 68,399,895 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604543,577,050 - 43,723,991 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sos1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473820,466,117 - 20,591,910 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473820,466,120 - 20,591,966 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SOS1
2339 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 5 2 3 5 1 14 1 3 3
Low 5 2 1 9 1
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000009279   ⟹   ENSSSCP00000009044
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl3101,089,243 - 101,138,837 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000009280   ⟹   ENSSSCP00000009045
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl3101,089,383 - 101,362,723 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000039269   ⟹   ENSSSCP00000043602
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl3101,209,641 - 101,362,703 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000044630   ⟹   ENSSSCP00000041463
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl3101,209,663 - 101,362,723 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000061552   ⟹   ENSSSCP00000035322
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl3101,209,663 - 101,362,723 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000068589   ⟹   ENSSSCP00000073560
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl3101,089,383 - 101,151,518 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000089906   ⟹   ENSSSCP00000070536
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl3101,102,118 - 101,152,265 (+)Ensembl
RefSeq Acc Id: XM_021087586   ⟹   XP_020943245
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.13101,209,568 - 101,366,057 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021087587   ⟹   XP_020943246
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.13101,209,568 - 101,366,057 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021087588   ⟹   XP_020943247
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.13101,209,568 - 101,366,057 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021087589   ⟹   XP_020943248
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.13101,209,568 - 101,366,057 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021087590   ⟹   XP_020943249
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.13101,209,568 - 101,366,057 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020943245   ⟸   XM_021087586
- Peptide Label: isoform X1
- UniProtKB: A0A0B8RT53 (UniProtKB/TrEMBL),   A0A286ZUQ0 (UniProtKB/TrEMBL),   A0A4X1SXR1 (UniProtKB/TrEMBL),   A0A8D0KAB0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943246   ⟸   XM_021087587
- Peptide Label: isoform X2
- UniProtKB: A0A4X1SXR7 (UniProtKB/TrEMBL),   A0A287AHT4 (UniProtKB/TrEMBL),   A0A8D0MQ46 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943248   ⟸   XM_021087589
- Peptide Label: isoform X4
- UniProtKB: A0A8D0MPX3 (UniProtKB/TrEMBL),   A0A4X1SW44 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943249   ⟸   XM_021087590
- Peptide Label: isoform X5
- UniProtKB: A0A4X1SW44 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943247   ⟸   XM_021087588
- Peptide Label: isoform X3
- UniProtKB: A0A8D0MLV7 (UniProtKB/TrEMBL),   A0A4X1SVL3 (UniProtKB/TrEMBL),   A0A8D0SYV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000043602   ⟸   ENSSSCT00000039269
RefSeq Acc Id: ENSSSCP00000009045   ⟸   ENSSSCT00000009280
RefSeq Acc Id: ENSSSCP00000009044   ⟸   ENSSSCT00000009279
RefSeq Acc Id: ENSSSCP00000073560   ⟸   ENSSSCT00000068589
RefSeq Acc Id: ENSSSCP00000041463   ⟸   ENSSSCT00000044630
RefSeq Acc Id: ENSSSCP00000070536   ⟸   ENSSSCT00000089906
RefSeq Acc Id: ENSSSCP00000035322   ⟸   ENSSSCT00000061552
Protein Domains
DH   N-terminal Ras-GEF   PH   Ras-GEF


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000008478 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005038763 UniProtKB/TrEMBL
  ENSSSCG00015010922 UniProtKB/TrEMBL
  ENSSSCG00025064440 UniProtKB/TrEMBL
  ENSSSCG00030062251 UniProtKB/TrEMBL
  ENSSSCG00035041322 UniProtKB/TrEMBL
  ENSSSCG00040068973 UniProtKB/TrEMBL
  ENSSSCG00045035107 UniProtKB/TrEMBL
  ENSSSCG00050020728 UniProtKB/TrEMBL
  ENSSSCG00060065362 UniProtKB/TrEMBL
  ENSSSCG00065014242 UniProtKB/TrEMBL
  ENSSSCG00070004513 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000039269 ENTREZGENE
  ENSSSCT00000039269.3 UniProtKB/TrEMBL
  ENSSSCT00000061552 ENTREZGENE
  ENSSSCT00000061552.1 UniProtKB/TrEMBL
  ENSSSCT00005062188.1 UniProtKB/TrEMBL
  ENSSSCT00005062260.1 UniProtKB/TrEMBL
  ENSSSCT00015014506.1 UniProtKB/TrEMBL
  ENSSSCT00015014562.1 UniProtKB/TrEMBL
  ENSSSCT00015014682.1 UniProtKB/TrEMBL
  ENSSSCT00015014828.1 UniProtKB/TrEMBL
  ENSSSCT00015015109.1 UniProtKB/TrEMBL
  ENSSSCT00025088391.1 UniProtKB/TrEMBL
  ENSSSCT00025088776.1 UniProtKB/TrEMBL
  ENSSSCT00025089126.1 UniProtKB/TrEMBL
  ENSSSCT00025089481.1 UniProtKB/TrEMBL
  ENSSSCT00030087068.1 UniProtKB/TrEMBL
  ENSSSCT00030087117.1 UniProtKB/TrEMBL
  ENSSSCT00030087152.1 UniProtKB/TrEMBL
  ENSSSCT00030087214.1 UniProtKB/TrEMBL
  ENSSSCT00035054909.1 UniProtKB/TrEMBL
  ENSSSCT00035054925.1 UniProtKB/TrEMBL
  ENSSSCT00035054932.1 UniProtKB/TrEMBL
  ENSSSCT00035054953.1 UniProtKB/TrEMBL
  ENSSSCT00040094714.1 UniProtKB/TrEMBL
  ENSSSCT00040094895.1 UniProtKB/TrEMBL
  ENSSSCT00045060308.1 UniProtKB/TrEMBL
  ENSSSCT00045060484.1 UniProtKB/TrEMBL
  ENSSSCT00045060688.1 UniProtKB/TrEMBL
  ENSSSCT00045060868.1 UniProtKB/TrEMBL
  ENSSSCT00050028044.1 UniProtKB/TrEMBL
  ENSSSCT00050028087.1 UniProtKB/TrEMBL
  ENSSSCT00060089250.1 UniProtKB/TrEMBL
  ENSSSCT00060089287.1 UniProtKB/TrEMBL
  ENSSSCT00065019081.1 UniProtKB/TrEMBL
  ENSSSCT00065019305.1 UniProtKB/TrEMBL
  ENSSSCT00065019334.1 UniProtKB/TrEMBL
  ENSSSCT00065019370.1 UniProtKB/TrEMBL
  ENSSSCT00070008624.1 UniProtKB/TrEMBL
  ENSSSCT00070008630.1 UniProtKB/TrEMBL
  ENSSSCT00070008637.1 UniProtKB/TrEMBL
  ENSSSCT00070008650.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
  1.10.840.10 UniProtKB/TrEMBL
  1.20.900.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  6.10.250.3060 UniProtKB/TrEMBL
  Son of sevenless (SoS) protein Chain: S domain 1 UniProtKB/TrEMBL
InterPro DBL_dom_sf UniProtKB/TrEMBL
  DH-domain UniProtKB/TrEMBL
  Histone-fold UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
  Ras-like_GEF UniProtKB/TrEMBL
  Ras-like_Gua-exchang_fac_N UniProtKB/TrEMBL
  Ras_G-nucl-exch_fac_CS UniProtKB/TrEMBL
  Ras_GEF_dom_sf UniProtKB/TrEMBL
  RASGEF_cat_dom UniProtKB/TrEMBL
  RASGEF_cat_dom_sf UniProtKB/TrEMBL
NCBI Gene SOS1 ENTREZGENE
PANTHER PTHR23113 UniProtKB/TrEMBL
  SON OF SEVENLESS HOMOLOG 1 UniProtKB/TrEMBL
Pfam PF00169 UniProtKB/TrEMBL
  RasGEF UniProtKB/TrEMBL
  RasGEF_N UniProtKB/TrEMBL
  RhoGEF UniProtKB/TrEMBL
PROSITE DH_2 UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
  RASGEF UniProtKB/TrEMBL
  RASGEF_CAT UniProtKB/TrEMBL
  RASGEF_NTER UniProtKB/TrEMBL
SMART RasGEF UniProtKB/TrEMBL
  RasGEFN UniProtKB/TrEMBL
  RhoGEF UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF47113 UniProtKB/TrEMBL
  SSF48065 UniProtKB/TrEMBL
  SSF48366 UniProtKB/TrEMBL
UniProt A0A0B8RT53 ENTREZGENE
  A0A286ZUQ0 ENTREZGENE, UniProtKB/TrEMBL
  A0A287AHT4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SVL3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SW44 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SXR1 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SXR7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0KAB0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0MLV7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0MPX3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0MQ46 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0SYV9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:110720 ENTREZGENE