LOC110257703 (paraneoplastic antigen-like protein 6B)

Gene: LOC110257703 (paraneoplastic antigen-like protein 6B) Sus scrofa

Analyze

Symbol:

LOC110257703

Name:

paraneoplastic antigen-like protein 6B

RGD ID:

13863573

Description:

ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); Barth syndrome (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	X	124,203,040 - 124,204,023 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adrenoleukodystrophy (ISO)

autistic disorder (ISO)

Barth syndrome (ISO)

cerebral creatine deficiency syndrome 1 (ISO)

dyskeratosis congenita (ISO)

Emery-Dreifuss muscular dystrophy (ISO)

favism (ISO)

paraplegia (ISO)

periventricular nodular heterotopia (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

References

Genomics

Comparative Map Data

LOC110257703
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	X	124,203,040 - 124,204,023 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

PNMA6E
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	153,395,639 - 153,414,004 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	153,395,639 - 153,401,392 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	152,661,097 - 152,666,808 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	152,315,381 - 152,317,501 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	X	152,896,085 - 152,896,990 (-)	NCBI		Celera
Cytogenetic Map	X	q28	NCBI
CHM1_1	X	152,529,920 - 152,533,884 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	151,669,233 - 151,687,464 (-)	NCBI		T2T-CHM13v2.0

Pnma6e
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	72,438,793 - 72,442,418 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	72,440,045 - 72,442,342 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	73,396,889 - 73,398,712 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	73,396,439 - 73,398,736 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	70,642,228 - 70,644,051 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Celera	X	64,650,732 - 64,652,555 (-)	NCBI		Celera
Cytogenetic Map	X	A7.3	NCBI
cM Map	X	37.3	NCBI

Pnma6e
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	156,254,009 - 156,259,971 (-)	NCBI		GRCr8
mRatBN7.2	X	151,103,531 - 151,108,630 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	151,103,755 - 151,106,037 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	X	157,423,258 - 157,426,356 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Cytogenetic Map	X	q37	NCBI

LOC112438438
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	153,436,004 - 153,442,768 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	153,439,608 - 153,446,372 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	142,947,214 - 142,949,820 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	152,833,450 - 152,835,274 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

PNMA6E
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	121,218,147 - 121,220,896 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	106,551,366 - 106,558,265 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	124,360,147 - 124,367,124 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	X	120,132,775 - 120,139,877 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	122,646,715 - 122,653,711 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	122,410,291 - 122,417,050 (-)	NCBI		UU_Cfam_GSD_1.0

Pnma6e
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	118,527,248 - 118,556,701 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936809	266,367 - 269,248 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PNMA6E
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666065	65,690,512 - 65,709,193 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in LOC110257703
10 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	nervous system
High
Medium
Low	3
Below cutoff	5

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021079885	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000122	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_021079885 ⟹ XP_020935544

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	X	124,203,040 - 124,204,023 (-)	NCBI

Sequence:

show sequence

ATGGCCGAGGCGGGAGCCTGGACCCGGCAGTGGAGGCAGGCCTTGCAGCCTGTGCTGGAGACCA
TGGGCTACGAGGAACTGAGAGCCTTCTCTGGGCTGGGAGAGCCAGGCGGCGGGGAAGAGTCCTT
CGAGAGCTGGCTGGACCACGCCAACGACATGCTGTACCTGTGGCGCCACGTGTCCGAGAGGGAG
CGGCGGCGGCGGCTGGTGGAGAGCCTGGGCGGCCCCGCGCTGGACCTCCTGTGCGGCCTCCTGG
CGCAAGATGCCGACATGGCCGCGCAGGACTGCCTGGCCGCGCTGGTGCAGGTGTTTGGGGACCA
GGACAGCCCGGTGACCGCGCGGCTCAGGTTCGCGACGTGCGCCCAGCGGCCGCAGGAGACGCTC
TTTGCCTACGTGATGCGCCTGGAAGGCCTGCTGCAGGCGGCCGTGGAGACGGAGGCCATCCACC
CGGCCACGGCCGACCAGGCGCGCGCCCGGCAGGTGCTGATGCGGGCGCGGCCCAACGACACGCT
CCAGACCAAGCTGAGGAGGCTGCGGCTGGAGCGGAGGCCCCCTGGCTTCGTGGGCCTGCTGCGC
CTCATCCGCGAGAGCGAGGCGTGGGAGGCCGAGCCGGCTGCGAGCGAGCAGGGGCACGGGGAAG
AAGAGGCCCACGCGGGCATCGCAGGCCTGGCCGCCGCCCAGCGCGCCCCGGCCCGTGACGTCGC
CGCCCAGGGCACCGCTGCAGAGGGCACCCTGGCCTTCCCGGCCCCCCTGGCCTTCCCGGCCCGG
GAAGACAGCGGCCAGGCTGCCCTTTCAAGGAAGGTGGCGCCCAGGCGCCCCCAGCCCGGGAAGA
GGCCGGTGTGGCAGTTCCTGCCGCCGCCGCCGCCGCCGAGGCTGGCGAGGCCGCCCCTGAAGCC
CGAGGTGCTGCCAGCGTGGCCCCTGCCCCTGGGGAGAGCAGCCAGGCCTCCCGGGAAGTCGGAA
GTGCTCCTGCTCCTGTGGGCCTAG

hide sequence

Protein Sequences


Protein RefSeqs	XP_020935544	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_020935544 ⟸ XM_021079885

- Sequence:

show sequence

MAEAGAWTRQWRQALQPVLETMGYEELRAFSGLGEPGGGEESFESWLDHANDMLYLWRHVSERE
RRRRLVESLGGPALDLLCGLLAQDADMAAQDCLAALVQVFGDQDSPVTARLRFATCAQRPQETL
FAYVMRLEGLLQAAVETEAIHPATADQARARQVLMRARPNDTLQTKLRRLRLERRPPGFVGLLR
LIRESEAWEAEPAASEQGHGEEEAHAGIAGLAAAQRAPARDVAAQGTAAEGTLAFPAPLAFPAR
EDSGQAALSRKVAPRRPQPGKRPVWQFLPPPPPPRLARPPLKPEVLPAWPLPLGRAARPPGKSE
VLLLLWA

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	LOC110257703	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar