PNLIPRP3 (pancreatic lipase related protein 3) - Rat Genome Database

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Gene: PNLIPRP3 (pancreatic lipase related protein 3) Sus scrofa
Analyze
Symbol: PNLIPRP3
Name: pancreatic lipase related protein 3
RGD ID: 13862581
Description: ENCODES a protein that exhibits metal ion binding (inferred); triglyceride lipase activity (inferred); INVOLVED IN lipid catabolic process (inferred); lipid metabolic process (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: pancreatic lipase-related protein 3
RGD Orthologs
Human
Mouse
Bonobo
Dog
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14126,677,455 - 126,716,529 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114126,668,569 - 126,717,139 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214137,861,108 - 137,898,039 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
PNLIPRP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14126,677,455 - 126,716,529 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114126,668,569 - 126,717,139 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214137,861,108 - 137,898,039 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PNLIPRP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810116,427,847 - 116,477,957 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10116,427,847 - 116,477,957 (+)EnsemblGRCh38hg38GRCh38
GRCh3710118,187,359 - 118,237,469 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610118,177,370 - 118,227,459 (+)NCBINCBI36Build 36hg18NCBI36
Celera10111,916,979 - 111,967,023 (+)NCBICelera
Cytogenetic Map10q25.3NCBI
HuRef10111,814,844 - 111,865,079 (+)NCBIHuRef
CHM1_110118,470,884 - 118,520,910 (+)NCBICHM1_1
T2T-CHM13v2.010117,322,181 - 117,372,229 (+)NCBIT2T-CHM13v2.0
Or52n20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397104,319,911 - 104,320,879 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7104,315,960 - 104,324,155 (+)EnsemblGRCm39 Ensembl
GRCm387104,670,704 - 104,671,672 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7104,666,753 - 104,674,948 (+)EnsemblGRCm38mm10GRCm38
MGSCv377111,819,218 - 111,820,186 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367104,544,525 - 104,545,493 (+)NCBIMGSCv36mm8
Celera7104,945,193 - 104,946,161 (+)NCBICelera
Cytogenetic Map7E3NCBI
cM Map755.69NCBI
PNLIPRP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28128,304,411 - 128,354,455 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110128,309,749 - 128,359,793 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010113,017,080 - 113,067,133 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110116,449,704 - 116,499,681 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10116,457,342 - 116,498,877 (+)Ensemblpanpan1.1panPan2
PNLIPRP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12827,064,823 - 27,092,693 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2827,058,258 - 27,091,134 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2827,215,130 - 27,242,990 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02827,600,908 - 27,628,758 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2827,594,602 - 27,627,472 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12827,155,161 - 27,183,453 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02827,168,806 - 27,203,078 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02827,364,126 - 27,391,978 (+)NCBIUU_Cfam_GSD_1.0
PNLIPRP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19109,238,862 - 109,290,181 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9109,238,862 - 109,287,898 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604870,482,663 - 70,532,663 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in PNLIPRP3
1494 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

hemolymphoid system respiratory system
High
Medium
Low
Below cutoff 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021073715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSSCT00000011656   ⟹   ENSSSCP00000011354
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14126,677,455 - 126,716,529 (+)Ensembl
RefSeq Acc Id: XM_021073715   ⟹   XP_020929374
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114126,668,569 - 126,717,139 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020929374   ⟸   XM_021073715
- UniProtKB: A0A4X1SYR7 (UniProtKB/TrEMBL),   F1S4U0 (UniProtKB/TrEMBL),   A0A8D1NIB7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000011354   ⟸   ENSSSCT00000011656
Protein Domains
Lipase   PLAT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010657 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005018789 UniProtKB/TrEMBL
  ENSSSCG00025062227 UniProtKB/TrEMBL
  ENSSSCG00030045132 UniProtKB/TrEMBL
  ENSSSCG00035066223 UniProtKB/TrEMBL
  ENSSSCG00040052767 UniProtKB/TrEMBL
  ENSSSCG00045002210 UniProtKB/TrEMBL
  ENSSSCG00050065573 UniProtKB/TrEMBL
  ENSSSCG00055018624 UniProtKB/TrEMBL
  ENSSSCG00060003193 UniProtKB/TrEMBL
  ENSSSCG00065056342 UniProtKB/TrEMBL
  ENSSSCG00070005414 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000011656 ENTREZGENE
  ENSSSCT00000011656.5 UniProtKB/TrEMBL
  ENSSSCT00005029724.1 UniProtKB/TrEMBL
  ENSSSCT00025085178.1 UniProtKB/TrEMBL
  ENSSSCT00030063016.1 UniProtKB/TrEMBL
  ENSSSCT00035089203.1 UniProtKB/TrEMBL
  ENSSSCT00040071318.1 UniProtKB/TrEMBL
  ENSSSCT00045003463.1 UniProtKB/TrEMBL
  ENSSSCT00050089325.1 UniProtKB/TrEMBL
  ENSSSCT00055036605.1 UniProtKB/TrEMBL
  ENSSSCT00060003949.1 UniProtKB/TrEMBL
  ENSSSCT00065077113.1 UniProtKB/TrEMBL
  ENSSSCT00070010254.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1820 UniProtKB/TrEMBL
  PLAT/LH2 domain UniProtKB/TrEMBL
InterPro AB_hydrolase UniProtKB/TrEMBL
  Lipase/vitellogenin UniProtKB/TrEMBL
  Lipase_LIPH UniProtKB/TrEMBL
  Lipase_N UniProtKB/TrEMBL
  Lipase_panc UniProtKB/TrEMBL
  PLAT/LH2_dom UniProtKB/TrEMBL
  PLAT/LH2_dom_sf UniProtKB/TrEMBL
  TAG_lipase UniProtKB/TrEMBL
NCBI Gene PNLIPRP3 ENTREZGENE
PANTHER PANCREATIC LIPASE-RELATED PROTEIN 3 UniProtKB/TrEMBL
  PTHR11610 UniProtKB/TrEMBL
Pfam Lipase UniProtKB/TrEMBL
  PLAT UniProtKB/TrEMBL
PIRSF Lipoprotein_lipase_LIPH UniProtKB/TrEMBL
PRINTS PANCLIPASE UniProtKB/TrEMBL
  TAGLIPASE UniProtKB/TrEMBL
Superfamily-SCOP SSF49723 UniProtKB/TrEMBL
  SSF53474 UniProtKB/TrEMBL
UniProt A0A4X1SYR7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1NIB7 ENTREZGENE, UniProtKB/TrEMBL
  F1S4U0 ENTREZGENE
UniProt Secondary F1S4U0 UniProtKB/TrEMBL
VGNC ID VGNC:91599 ENTREZGENE