GATAD2A (GATA zinc finger domain containing 2A) - Rat Genome Database

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Gene: GATAD2A (GATA zinc finger domain containing 2A) Sus scrofa
Analyze
Symbol: GATAD2A
Name: GATA zinc finger domain containing 2A
RGD ID: 13862266
Description: ENCODES a protein that exhibits protein-macromolecule adaptor activity (inferred); sequence-specific DNA binding (inferred); INVOLVED IN anterior neuropore closure (ortholog); blood vessel development (ortholog); embryonic body morphogenesis (ortholog); PARTICIPATES IN CHD family mediated chromatin remodeling pathway; ASSOCIATED WITH genetic disease (ortholog); Genetic Predisposition to Disease (ortholog); Stomach Neoplasms (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred); NuRD complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transcriptional repressor p66-alpha
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl258,415,750 - 58,517,162 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1258,415,749 - 58,517,308 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2258,210,083 - 58,282,240 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (IEA)
nucleus  (IEA)
NuRD complex  (IBA,IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GATAD2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl258,415,750 - 58,517,162 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1258,415,749 - 58,517,308 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2258,210,083 - 58,282,240 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GATAD2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381919,385,843 - 19,508,932 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1919,385,826 - 19,508,932 (+)EnsemblGRCh38hg38GRCh38
GRCh371919,496,652 - 19,619,741 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361919,430,401 - 19,478,789 (+)NCBINCBI36Build 36hg18NCBI36
Celera1919,400,702 - 19,523,801 (+)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1919,058,971 - 19,181,846 (+)NCBIHuRef
CHM1_11919,497,349 - 19,620,430 (+)NCBICHM1_1
T2T-CHM13v2.01919,523,327 - 19,646,416 (+)NCBIT2T-CHM13v2.0
Gatad2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39870,359,719 - 70,450,093 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl870,359,726 - 70,449,034 (-)EnsemblGRCm39 Ensembl
GRCm38869,907,069 - 69,996,402 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl869,907,076 - 69,996,384 (-)EnsemblGRCm38mm10GRCm38
MGSCv37872,430,968 - 72,520,278 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36872,837,459 - 72,925,353 (-)NCBIMGSCv36mm8
Celera872,466,875 - 72,555,282 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.06NCBI
Gatad2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81619,463,500 - 19,553,497 (+)NCBIGRCr8
mRatBN7.21619,429,578 - 19,520,320 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1619,429,578 - 19,519,587 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1619,469,767 - 19,560,312 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01620,601,537 - 20,698,495 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01619,522,741 - 19,613,295 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01621,177,793 - 21,267,768 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1621,178,138 - 21,268,504 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01621,093,916 - 21,184,843 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,913,558 - 20,004,379 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11619,994,115 - 20,003,487 (+)NCBI
Celera1619,618,575 - 19,708,686 (+)NCBICelera
Cytogenetic Map16p14NCBI
Gatad2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555242,439,594 - 2,506,538 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555242,439,594 - 2,506,539 (-)NCBIChiLan1.0ChiLan1.0
GATAD2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22024,246,369 - 24,371,310 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11923,254,888 - 23,377,728 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01918,824,615 - 18,947,351 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11919,824,575 - 19,942,670 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1919,873,119 - 19,942,670 (+)Ensemblpanpan1.1panPan2
GATAD2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12043,736,471 - 43,853,505 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2043,739,849 - 43,846,370 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2043,654,024 - 43,770,694 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02044,224,437 - 44,341,415 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2044,226,432 - 44,334,257 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12043,462,030 - 43,578,906 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02043,871,448 - 43,988,560 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02044,147,086 - 44,263,794 (-)NCBIUU_Cfam_GSD_1.0
Gatad2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118202,409,830 - 202,525,336 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365961,958,844 - 2,074,707 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365961,958,961 - 2,074,471 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GATAD2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1617,847,310 - 17,971,219 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl617,847,307 - 17,971,220 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660741,332,270 - 1,458,474 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gatad2a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249082,230,581 - 2,308,579 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249082,213,661 - 2,305,877 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GATAD2A
1225 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 1 1 1
Low 9 4 3 4 2 23 2 2 2
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000015224   ⟹   ENSSSCP00000014818
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl258,415,750 - 58,457,508 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000052466   ⟹   ENSSSCP00000051268
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl258,417,757 - 58,517,191 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000055962   ⟹   ENSSSCP00000036682
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl258,415,750 - 58,517,162 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000075873   ⟹   ENSSSCP00000071411
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl258,415,750 - 58,457,508 (-)Ensembl
RefSeq Acc Id: XM_005654919   ⟹   XP_005654976
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1258,415,838 - 58,487,922 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021083423   ⟹   XP_020939082
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1258,415,749 - 58,517,308 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021083424   ⟹   XP_020939083
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1258,415,838 - 58,506,096 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021083425   ⟹   XP_020939084
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1258,415,838 - 58,487,809 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021083426   ⟹   XP_020939085
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1258,415,838 - 58,478,376 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021083427   ⟹   XP_020939086
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1258,415,749 - 58,517,211 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020939082   ⟸   XM_021083423
- Peptide Label: isoform X1
- UniProtKB: A0A480EGJ1 (UniProtKB/TrEMBL),   A0A4X1U279 (UniProtKB/TrEMBL),   A0A8D1J0E9 (UniProtKB/TrEMBL),   A0A8D1NTM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939086   ⟸   XM_021083427
- Peptide Label: isoform X3
- UniProtKB: A0A4X1U4Y4 (UniProtKB/TrEMBL),   A0A286ZYU3 (UniProtKB/TrEMBL),   A0A8D1IXI6 (UniProtKB/TrEMBL),   A0A8D1NRK6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939083   ⟸   XM_021083424
- Peptide Label: isoform X1
- UniProtKB: A0A480EGJ1 (UniProtKB/TrEMBL),   A0A4X1U279 (UniProtKB/TrEMBL),   A0A8D1J0E9 (UniProtKB/TrEMBL),   A0A8D1NTM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005654976   ⟸   XM_005654919
- Peptide Label: isoform X1
- UniProtKB: A0A480EGJ1 (UniProtKB/TrEMBL),   A0A4X1U279 (UniProtKB/TrEMBL),   A0A8D1J0E9 (UniProtKB/TrEMBL),   A0A8D1NTM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939084   ⟸   XM_021083425
- Peptide Label: isoform X1
- UniProtKB: A0A480EGJ1 (UniProtKB/TrEMBL),   A0A4X1U279 (UniProtKB/TrEMBL),   A0A8D1J0E9 (UniProtKB/TrEMBL),   A0A8D1NTM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939085   ⟸   XM_021083426
- Peptide Label: isoform X2
- UniProtKB: A0A4X1TZK5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000014818   ⟸   ENSSSCT00000015224
RefSeq Acc Id: ENSSSCP00000036682   ⟸   ENSSSCT00000055962
RefSeq Acc Id: ENSSSCP00000071411   ⟸   ENSSSCT00000075873
RefSeq Acc Id: ENSSSCP00000051268   ⟸   ENSSSCT00000052466
Protein Domains
GATA-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000013938 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015065128 UniProtKB/TrEMBL
  ENSSSCG00035061989 UniProtKB/TrEMBL
  ENSSSCG00040068603 UniProtKB/TrEMBL
  ENSSSCG00045034146 UniProtKB/TrEMBL
  ENSSSCG00050071260 UniProtKB/TrEMBL
  ENSSSCG00055020299 UniProtKB/TrEMBL
  ENSSSCG00060048697 UniProtKB/TrEMBL
  ENSSSCG00070014035 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000015224.5 UniProtKB/TrEMBL
  ENSSSCT00000055962 ENTREZGENE
  ENSSSCT00000055962.2 UniProtKB/TrEMBL
  ENSSSCT00000075873 ENTREZGENE
  ENSSSCT00000075873.2 UniProtKB/TrEMBL
  ENSSSCT00015087444.1 UniProtKB/TrEMBL
  ENSSSCT00015087667.1 UniProtKB/TrEMBL
  ENSSSCT00035083330.1 UniProtKB/TrEMBL
  ENSSSCT00040094150.1 UniProtKB/TrEMBL
  ENSSSCT00040094367.1 UniProtKB/TrEMBL
  ENSSSCT00040094520.1 UniProtKB/TrEMBL
  ENSSSCT00045058553.1 UniProtKB/TrEMBL
  ENSSSCT00045058683.1 UniProtKB/TrEMBL
  ENSSSCT00045058765.1 UniProtKB/TrEMBL
  ENSSSCT00050097208.1 UniProtKB/TrEMBL
  ENSSSCT00050097217.1 UniProtKB/TrEMBL
  ENSSSCT00055040766.1 UniProtKB/TrEMBL
  ENSSSCT00055040882.1 UniProtKB/TrEMBL
  ENSSSCT00055040972.1 UniProtKB/TrEMBL
  ENSSSCT00055041057.1 UniProtKB/TrEMBL
  ENSSSCT00060066152.1 UniProtKB/TrEMBL
  ENSSSCT00060066161.1 UniProtKB/TrEMBL
  ENSSSCT00070027516.1 UniProtKB/TrEMBL
  ENSSSCT00070027523.1 UniProtKB/TrEMBL
  ENSSSCT00070027531.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.250.1650 UniProtKB/TrEMBL
InterPro P66 UniProtKB/TrEMBL
  P66_CC UniProtKB/TrEMBL
  Znf_GATA UniProtKB/TrEMBL
KEGG Report ssc:100518418 UniProtKB/TrEMBL
NCBI Gene GATAD2A ENTREZGENE
PANTHER PTHR13455 UniProtKB/TrEMBL
  TRANSCRIPTIONAL REPRESSOR P66-ALPHA UniProtKB/TrEMBL
Pfam GATA UniProtKB/TrEMBL
  P66_CC UniProtKB/TrEMBL
PROSITE GATA_ZN_FINGER_1 UniProtKB/TrEMBL
  GATA_ZN_FINGER_2 UniProtKB/TrEMBL
UniProt A0A286ZYU3 ENTREZGENE, UniProtKB/TrEMBL
  A0A480EGJ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TZK5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U279 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U4Y4 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2R2J4_PIG UniProtKB/TrEMBL
  A0A8D1IXI6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1J0E9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1J958_PIG UniProtKB/TrEMBL
  A0A8D1KK97_PIG UniProtKB/TrEMBL
  A0A8D1NRK6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1NTM3 ENTREZGENE, UniProtKB/TrEMBL
  F1S6P9_PIG UniProtKB/TrEMBL
VGNC ID VGNC:88368 ENTREZGENE