BPIFB3 (BPI fold containing family B member 3) - Rat Genome Database

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Gene: BPIFB3 (BPI fold containing family B member 3) Sus scrofa
Analyze
Symbol: BPIFB3
Name: BPI fold containing family B member 3
RGD ID: 13861434
Description: ENCODES a protein that exhibits lipid binding (inferred); ASSOCIATED WITH glutathione synthetase deficiency (ortholog); glutatione synthetase deficiency with 5-oxoprolinuria (ortholog); hypermethioninemia with deficiency of S-adenosylhomocysteine hydrolase (ortholog); FOUND IN cytoplasm (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BPI fold-containing family B member 3; long palate lung and nasal epithelium protein 3; RYA3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1736,577,408 - 36,602,149 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11736,584,608 - 36,602,145 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21741,547,752 - 41,565,335 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:21787330   PMID:21787333   PMID:22301074  


Genomics

Comparative Map Data
BPIFB3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1736,577,408 - 36,602,149 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11736,584,608 - 36,602,145 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21741,547,752 - 41,565,335 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BPIFB3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382033,053,903 - 33,073,847 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2033,053,903 - 33,073,847 (+)EnsemblGRCh38hg38GRCh38
GRCh372031,641,709 - 31,661,653 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362031,106,891 - 31,125,095 (+)NCBINCBI36Build 36hg18NCBI36
Celera2028,397,115 - 28,415,310 (+)NCBICelera
Cytogenetic Map20q11.21NCBI
HuRef2028,430,357 - 28,448,556 (+)NCBIHuRef
CHM1_12031,543,370 - 31,561,565 (+)NCBICHM1_1
T2T-CHM13v2.02034,780,603 - 34,800,582 (+)NCBIT2T-CHM13v2.0
Bpifb3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392153,760,118 - 153,774,916 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2153,760,150 - 153,774,916 (+)EnsemblGRCm39 Ensembl
GRCm382153,918,198 - 153,932,996 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2153,918,230 - 153,932,996 (+)EnsemblGRCm38mm10GRCm38
MGSCv372153,743,966 - 153,758,732 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362153,609,671 - 153,624,437 (+)NCBIMGSCv36mm8
Celera2159,754,119 - 159,769,356 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map275.99NCBI
Bpifb3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83162,861,234 - 162,875,850 (+)NCBIGRCr8
mRatBN7.23142,401,068 - 142,415,684 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx3146,302,990 - 146,317,609 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03154,886,817 - 154,901,436 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03152,627,060 - 152,641,660 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03149,401,890 - 149,416,506 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3149,401,890 - 149,416,506 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03155,779,667 - 155,794,283 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43144,303,258 - 144,317,875 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3141,142,203 - 141,156,819 (+)NCBICelera
Cytogenetic Map3q41NCBI
Bpifb3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542228,192,605 - 28,207,500 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542228,192,359 - 28,208,946 (-)NCBIChiLan1.0ChiLan1.0
BPIFB3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22138,744,629 - 38,763,203 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12038,737,727 - 38,756,302 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02029,339,270 - 29,359,959 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12030,458,268 - 30,478,127 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2030,458,268 - 30,478,127 (+)Ensemblpanpan1.1panPan2
BPIFB3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12422,319,861 - 22,337,914 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2422,319,874 - 22,337,914 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2421,966,999 - 21,983,488 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02423,007,124 - 23,023,599 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2423,007,124 - 23,023,632 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12422,282,712 - 22,299,196 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02422,392,648 - 22,409,110 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02422,823,769 - 22,840,253 (+)NCBIUU_Cfam_GSD_1.0
Bpifb3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640171,312,622 - 171,326,953 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648519,744,007 - 19,758,094 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648519,744,010 - 19,758,300 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BPIFB3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1237,421,378 - 37,442,007 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl237,423,532 - 37,441,765 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605089,462,047 - 89,482,454 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bpifb3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248426,229,521 - 6,244,101 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248426,229,281 - 6,244,850 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in BPIFB3
653 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
ectoderm
nervous system
1 9 9

Sequence


Ensembl Acc Id: ENSSSCT00000044650   ⟹   ENSSSCP00000042146
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1736,577,408 - 36,602,149 (+)Ensembl
RefSeq Acc Id: XM_013985243   ⟹   XP_013840697
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11736,584,608 - 36,602,145 (+)NCBI
Sequence:
RefSeq Acc Id: XP_013840697   ⟸   XM_013985243
- UniProtKB: A0A8D1VV27 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000042146   ⟸   ENSSSCT00000044650

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000026137 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025053677 UniProtKB/TrEMBL
  ENSSSCG00030057173 UniProtKB/TrEMBL
  ENSSSCG00035070584 UniProtKB/TrEMBL
  ENSSSCG00040008900 UniProtKB/TrEMBL
  ENSSSCG00045023508 UniProtKB/TrEMBL
  ENSSSCG00050035564 UniProtKB/TrEMBL
  ENSSSCG00055022344 UniProtKB/TrEMBL
  ENSSSCG00060052023 UniProtKB/TrEMBL
  ENSSSCG00065074716 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000044650 ENTREZGENE
  ENSSSCT00000044650.3 UniProtKB/TrEMBL
  ENSSSCT00025073418.1 UniProtKB/TrEMBL
  ENSSSCT00030079773.1 UniProtKB/TrEMBL
  ENSSSCT00035095400.1 UniProtKB/TrEMBL
  ENSSSCT00040011567.1 UniProtKB/TrEMBL
  ENSSSCT00045040186.1 UniProtKB/TrEMBL
  ENSSSCT00050047803.1 UniProtKB/TrEMBL
  ENSSSCT00055044059.1 UniProtKB/TrEMBL
  ENSSSCT00060070813.1 UniProtKB/TrEMBL
  ENSSSCT00065102955.1 UniProtKB/TrEMBL
InterPro Bactericidal_perm-incr_a/b_dom UniProtKB/TrEMBL
  BPI_fold-BPI/LBP UniProtKB/TrEMBL
  Lipid-bd_serum_glycop_C UniProtKB/TrEMBL
  Lipid-bd_serum_glycop_N UniProtKB/TrEMBL
NCBI Gene BPIFB3 ENTREZGENE
PANTHER BPI FOLD-CONTAINING FAMILY B MEMBER 4-RELATED UniProtKB/TrEMBL
  PTHR46019:SF5 UniProtKB/TrEMBL
Pfam LBP_BPI_CETP UniProtKB/TrEMBL
  LBP_BPI_CETP_C UniProtKB/TrEMBL
SMART BPI1 UniProtKB/TrEMBL
  BPI2 UniProtKB/TrEMBL
Superfamily-SCOP SSF55394 UniProtKB/TrEMBL
UniProt A0A287ADQ5_PIG UniProtKB/TrEMBL
  A0A8D0UV72_PIG UniProtKB/TrEMBL
  A0A8D0XEL3_PIG UniProtKB/TrEMBL
  A0A8D1DB92_PIG UniProtKB/TrEMBL
  A0A8D1L1S4_PIG UniProtKB/TrEMBL
  A0A8D1RFP6_PIG UniProtKB/TrEMBL
  A0A8D1VV27 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:95772 ENTREZGENE