TST (thiosulfate sulfurtransferase) - Rat Genome Database

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Gene: TST (thiosulfate sulfurtransferase) Sus scrofa
Analyze
Symbol: TST
Name: thiosulfate sulfurtransferase
RGD ID: 13860092
Description: ENCODES a protein that exhibits 5S rRNA binding (inferred); thiosulfate sulfurtransferase activity (inferred); transferase activity (inferred); INVOLVED IN epithelial cell differentiation (inferred); rRNA import into mitochondrion (inferred); rRNA transport (inferred); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); autosomal recessive chronic granulomatous disease 3 (ortholog); colitis (ortholog); FOUND IN mitochondrial matrix (inferred); mitochondrion (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: thiosulfate sulfurtransferase (rhodanese)-like domain containing 1; TSTD1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl510,746,890 - 10,759,622 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1510,749,264 - 10,759,623 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.258,348,614 - 8,358,974 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TST
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl510,746,890 - 10,759,622 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1510,749,264 - 10,759,623 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.258,348,614 - 8,358,974 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TST
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382237,010,859 - 37,020,183 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2237,010,859 - 37,020,183 (-)EnsemblGRCh38hg38GRCh38
GRCh372237,406,900 - 37,416,224 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362235,736,852 - 35,745,437 (-)NCBINCBI36Build 36hg18NCBI36
Build 342235,731,406 - 35,739,991NCBI
Celera2221,208,242 - 21,216,827 (-)NCBICelera
Cytogenetic Map22q12.3NCBI
HuRef2220,372,028 - 20,390,853 (-)NCBIHuRef
CHM1_12237,366,379 - 37,375,716 (-)NCBICHM1_1
T2T-CHM13v2.02237,470,450 - 37,479,782 (-)NCBIT2T-CHM13v2.0
Tst
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391578,283,756 - 78,290,065 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1578,283,756 - 78,290,107 (-)EnsemblGRCm39 Ensembl
GRCm381578,399,556 - 78,405,865 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1578,399,556 - 78,405,907 (-)EnsemblGRCm38mm10GRCm38
MGSCv371578,229,986 - 78,236,289 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361578,226,811 - 78,233,117 (-)NCBIMGSCv36mm8
Celera1579,862,256 - 79,868,553 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.47NCBI
Tst
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87111,828,557 - 111,836,980 (-)NCBIGRCr8
mRatBN7.27109,948,061 - 109,955,378 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7109,948,062 - 109,957,216 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7111,697,709 - 111,704,460 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07113,921,242 - 113,927,993 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07113,889,944 - 113,896,691 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07119,616,323 - 119,623,072 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7119,616,324 - 119,623,072 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07119,606,998 - 119,613,747 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47116,349,579 - 116,355,921 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17116,383,866 - 116,390,114 (-)NCBI
Celera7106,286,095 - 106,292,845 (-)NCBICelera
Cytogenetic Map7q34NCBI
Tst
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541323,528,417 - 23,534,979 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541323,528,468 - 23,534,890 (-)NCBIChiLan1.0ChiLan1.0
TST
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22346,867,782 - 46,876,495 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12249,556,361 - 49,565,060 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02217,925,215 - 17,933,919 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12235,761,073 - 35,769,651 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2235,761,073 - 35,768,992 (-)Ensemblpanpan1.1panPan2
TST
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11027,474,101 - 27,486,603 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1027,473,764 - 27,486,575 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1027,427,965 - 27,441,111 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01028,265,478 - 28,278,615 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1028,266,267 - 28,278,613 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11027,987,062 - 28,000,182 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01028,295,640 - 28,308,756 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01028,473,581 - 28,486,734 (+)NCBIUU_Cfam_GSD_1.0
Tst
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494510,870,086 - 10,876,466 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364923,880,500 - 3,886,950 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364923,880,545 - 3,886,881 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TST
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11919,716,295 - 19,724,712 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1919,716,180 - 19,724,589 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045106,137,782 - 106,146,330 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tst
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475210,765,137 - 10,774,800 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475210,765,126 - 10,772,159 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TST
603 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 6 1 2 1
Low 4 4 3 5 2 22 3 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000000139   ⟹   ENSSSCP00000000137
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl510,749,760 - 10,759,622 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000044466   ⟹   ENSSSCP00000058443
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl510,746,890 - 10,759,622 (+)Ensembl
RefSeq Acc Id: XM_005663809   ⟹   XP_005663866
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1510,749,766 - 10,759,623 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005663810   ⟹   XP_005663867
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1510,749,264 - 10,759,623 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005663867   ⟸   XM_005663810
- Peptide Label: isoform X2
- UniProtKB: A0A8D0R651 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005663866   ⟸   XM_005663809
- Peptide Label: isoform X1
- UniProtKB: F1SKL2 (UniProtKB/TrEMBL),   A0A4X1U9F0 (UniProtKB/TrEMBL),   A0A8D0R651 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000058443   ⟸   ENSSSCT00000044466
RefSeq Acc Id: ENSSSCP00000000137   ⟸   ENSSSCT00000000139
Protein Domains
Rhodanese


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000000133 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015069146 UniProtKB/TrEMBL
  ENSSSCG00025020851 UniProtKB/TrEMBL
  ENSSSCG00030007488 UniProtKB/TrEMBL
  ENSSSCG00035068294 UniProtKB/TrEMBL
  ENSSSCG00045030370 UniProtKB/TrEMBL
  ENSSSCG00050073380 UniProtKB/TrEMBL
  ENSSSCG00055030439 UniProtKB/TrEMBL
  ENSSSCG00060073910 UniProtKB/TrEMBL
  ENSSSCG00065018238 UniProtKB/TrEMBL
  ENSSSCG00070015555 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000000139 ENTREZGENE
  ENSSSCT00000000139.4 UniProtKB/TrEMBL
  ENSSSCT00000044466.3 UniProtKB/TrEMBL
  ENSSSCT00015092810.1 UniProtKB/TrEMBL
  ENSSSCT00015092994.1 UniProtKB/TrEMBL
  ENSSSCT00025028413.1 UniProtKB/TrEMBL
  ENSSSCT00030010068.1 UniProtKB/TrEMBL
  ENSSSCT00030010082.1 UniProtKB/TrEMBL
  ENSSSCT00035092181.1 UniProtKB/TrEMBL
  ENSSSCT00035092204.1 UniProtKB/TrEMBL
  ENSSSCT00045051849.1 UniProtKB/TrEMBL
  ENSSSCT00045051896.1 UniProtKB/TrEMBL
  ENSSSCT00050100308.1 UniProtKB/TrEMBL
  ENSSSCT00050100323.1 UniProtKB/TrEMBL
  ENSSSCT00055060573.1 UniProtKB/TrEMBL
  ENSSSCT00055060582.1 UniProtKB/TrEMBL
  ENSSSCT00060101183.1 UniProtKB/TrEMBL
  ENSSSCT00065024248.1 UniProtKB/TrEMBL
  ENSSSCT00065024255.1 UniProtKB/TrEMBL
  ENSSSCT00070030582.1 UniProtKB/TrEMBL
  ENSSSCT00070030665.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.250.10 UniProtKB/TrEMBL
InterPro Rhodanese-like_dom UniProtKB/TrEMBL
  Rhodanese-like_dom_sf UniProtKB/TrEMBL
  Thiosulphate_STrfase_CS UniProtKB/TrEMBL
  TST/MPST-like UniProtKB/TrEMBL
KEGG Report ssc:100153230 UniProtKB/TrEMBL
NCBI Gene TST ENTREZGENE
PANTHER PTHR11364 UniProtKB/TrEMBL
  THIOSULFATE SULFURTRANSFERASE UniProtKB/TrEMBL
Pfam Rhodanese UniProtKB/TrEMBL
PROSITE RHODANESE_1 UniProtKB/TrEMBL
  RHODANESE_2 UniProtKB/TrEMBL
  RHODANESE_3 UniProtKB/TrEMBL
SMART RHOD UniProtKB/TrEMBL
Superfamily-SCOP SSF52821 UniProtKB/TrEMBL
UniProt A0A287BPT5_PIG UniProtKB/TrEMBL
  A0A4X1U9F0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0R651 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1B2G5_PIG UniProtKB/TrEMBL
  A0A8D1UET6_PIG UniProtKB/TrEMBL
  A0A8D2BU89_PIG UniProtKB/TrEMBL
  F1SKL2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:94529 ENTREZGENE