CCDC85C (coiled-coil domain containing 85C) - Rat Genome Database

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Gene: CCDC85C (coiled-coil domain containing 85C) Sus scrofa
Analyze
Symbol: CCDC85C
Name: coiled-coil domain containing 85C
RGD ID: 13860032
Description: INVOLVED IN cell population proliferation (ortholog); cerebral cortex development (ortholog); establishment of cell polarity (ortholog); ASSOCIATED WITH genetic disease (ortholog); hydrocephalus (ortholog); INTELLECTUAL DEVELOPMENTAL DISORDER WITH HYPERTELORISM AND DISTINCTIVE FACIES (ortholog); FOUND IN adherens junction (inferred); apical junction complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 85C
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7120,514,491 - 120,597,318 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17120,514,488 - 120,597,409 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27128,124,329 - 128,148,522 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CCDC85C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7120,514,491 - 120,597,318 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17120,514,488 - 120,597,409 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27128,124,329 - 128,148,522 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC85C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381499,500,190 - 99,604,207 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1499,500,190 - 99,604,207 (-)EnsemblGRCh38hg38GRCh38
GRCh371499,966,527 - 100,070,544 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361499,046,540 - 99,140,110 (-)NCBINCBI36Build 36hg18NCBI36
Celera1480,032,485 - 80,125,607 (-)NCBICelera
Cytogenetic Map14q32.2NCBI
HuRef1480,161,003 - 80,254,066 (-)NCBIHuRef
CHM1_11499,915,361 - 100,008,351 (-)NCBICHM1_1
T2T-CHM13v2.01493,731,756 - 93,835,650 (-)NCBIT2T-CHM13v2.0
Ccdc85c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912108,169,858 - 108,244,111 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12108,169,861 - 108,241,684 (-)EnsemblGRCm39 Ensembl
GRCm3812108,203,599 - 108,277,852 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12108,203,602 - 108,275,425 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712109,444,555 - 109,513,627 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612108,654,152 - 108,723,483 (-)NCBIMGSCv36mm8
Celera12109,446,564 - 109,515,546 (-)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1259.23NCBI
Ccdc85c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86132,877,851 - 132,948,744 (-)NCBIGRCr8
mRatBN7.26127,113,440 - 127,184,328 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6127,113,442 - 127,184,371 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.06132,113,806 - 132,183,434 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06141,284,186 - 141,353,658 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46132,572,485 - 132,641,431 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6124,672,684 - 124,742,377 (-)NCBICelera
Cytogenetic Map6q32NCBI
Ccdc85c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543820,853,560 - 20,909,510 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543820,851,085 - 20,909,512 (-)NCBIChiLan1.0ChiLan1.0
CCDC85C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215100,666,643 - 100,760,232 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11499,883,139 - 99,976,695 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01480,134,889 - 80,229,717 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11499,458,198 - 99,550,546 (-)NCBIpanpan1.1PanPan1.1panPan2
CCDC85C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1867,930,372 - 68,006,689 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl867,929,555 - 68,004,891 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha867,450,734 - 67,528,156 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0868,214,408 - 68,291,855 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl868,215,298 - 68,292,190 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1867,875,375 - 67,952,761 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0867,941,872 - 68,019,111 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0868,338,989 - 68,416,468 (-)NCBIUU_Cfam_GSD_1.0
Ccdc85c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086406,693,763 - 6,765,570 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366043,319,799 - 3,388,781 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366043,316,898 - 3,388,687 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC85C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12477,470,947 - 77,560,425 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2477,471,048 - 77,560,331 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605364,606,196 - 64,701,019 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc85c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247344,310,607 - 4,366,209 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247344,310,662 - 4,366,209 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CCDC85C
3935 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 10 4 3 4 2 22 2 3 3
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000064108   ⟹   ENSSSCP00000054345
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl7120,514,491 - 120,597,318 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000085688   ⟹   ENSSSCP00000063961
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl7120,514,491 - 120,597,711 (-)Ensembl
RefSeq Acc Id: XM_021099687   ⟹   XP_020955346
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.17120,514,488 - 120,597,408 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021099688   ⟹   XP_020955347
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.17120,514,488 - 120,597,409 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020955347   ⟸   XM_021099688
- Peptide Label: isoform X2
- UniProtKB: A0A8D0V859 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955346   ⟸   XM_021099687
- Peptide Label: isoform X1
- UniProtKB: A0A8D0RQT1 (UniProtKB/TrEMBL),   A0A8D0V859 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000054345   ⟸   ENSSSCT00000064108
RefSeq Acc Id: ENSSSCP00000063961   ⟸   ENSSSCT00000085688


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000037284 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025034475 UniProtKB/TrEMBL
  ENSSSCG00030003807 UniProtKB/TrEMBL
  ENSSSCG00035033050 UniProtKB/TrEMBL
  ENSSSCG00045010664 UniProtKB/TrEMBL
  ENSSSCG00055028819 UniProtKB/TrEMBL
  ENSSSCG00070009578 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000064108 ENTREZGENE
  ENSSSCT00000064108.3 UniProtKB/TrEMBL
  ENSSSCT00025047019.1 UniProtKB/TrEMBL
  ENSSSCT00030004974.1 UniProtKB/TrEMBL
  ENSSSCT00035043789.1 UniProtKB/TrEMBL
  ENSSSCT00045018119.1 UniProtKB/TrEMBL
  ENSSSCT00055057224.1 UniProtKB/TrEMBL
  ENSSSCT00070018567.1 UniProtKB/TrEMBL
InterPro CCDC85 UniProtKB/TrEMBL
NCBI Gene CCDC85C ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 85C UniProtKB/TrEMBL
  PTHR13546 UniProtKB/TrEMBL
Pfam CCDC85 UniProtKB/TrEMBL
UniProt A0A287BCU3_PIG UniProtKB/TrEMBL
  A0A4X1TFX1_PIG UniProtKB/TrEMBL
  A0A8D0RQT1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0V859 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1S9X7_PIG UniProtKB/TrEMBL
VGNC ID VGNC:86322 ENTREZGENE