CA11 (carbonic anhydrase 11) - Rat Genome Database

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Gene: CA11 (carbonic anhydrase 11) Sus scrofa
Analyze
Symbol: CA11
Name: carbonic anhydrase 11
RGD ID: 13858762
Description: ENCODES a protein that exhibits carbonate dehydratase activity (inferred); zinc ion binding (inferred); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN basolateral plasma membrane (inferred); extracellular region (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: CA-RP XI; CA-XI; CAR-XI; carbonic anhydrase-related protein 11; carbonic anhydrase-related XI protein; CARP XI
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl653,993,393 - 53,999,174 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1653,993,183 - 53,999,357 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2649,740,565 - 49,746,393 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:9878252  


Genomics

Comparative Map Data
CA11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl653,993,393 - 53,999,174 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1653,993,183 - 53,999,357 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2649,740,565 - 49,746,393 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CA11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1948,637,946 - 48,646,187 (-)EnsemblGRCh38hg38GRCh38
GRCh381948,637,946 - 48,646,187 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371949,141,203 - 49,149,444 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361953,833,084 - 53,841,263 (-)NCBINCBI36hg18NCBI36
Build 341953,833,083 - 53,841,065NCBI
Celera1946,006,137 - 46,014,315 (-)NCBI
Cytogenetic Map19q13.33NCBI
HuRef1945,520,726 - 45,528,907 (-)NCBIHuRef
CHM1_11949,143,073 - 49,151,416 (-)NCBICHM1_1
Car11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39745,348,537 - 45,354,111 (+)NCBIGRCm39mm39
GRCm39 Ensembl745,349,267 - 45,354,106 (+)Ensembl
GRCm38745,699,171 - 45,704,687 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,699,843 - 45,704,682 (+)EnsemblGRCm38mm10GRCm38
MGSCv37752,955,337 - 52,960,041 (+)NCBIGRCm37mm9NCBIm37
MGSCv36745,568,009 - 45,572,713 (+)NCBImm8
Celera741,162,525 - 41,167,228 (+)NCBICelera
Cytogenetic Map7B3NCBI
Ca11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2196,169,900 - 96,175,191 (+)NCBI
Rnor_6.0 Ensembl1101,682,172 - 101,687,293 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01101,682,009 - 101,687,358 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01102,760,809 - 102,766,190 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4196,167,823 - 96,172,934 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1196,245,933 - 96,251,046 (+)NCBI
Celera190,423,279 - 90,428,390 (+)NCBICelera
Cytogenetic Map1q22NCBI
Ca11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,910,421 - 1,916,156 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,910,421 - 1,914,988 (+)NCBIChiLan1.0ChiLan1.0
CA11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11954,231,798 - 54,240,248 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1954,231,798 - 54,240,247 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01945,639,401 - 45,647,555 (-)NCBIMhudiblu_PPA_v0panPan3
CA11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,669,184 - 107,674,825 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,669,419 - 107,674,792 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1107,190,692 - 107,196,318 (+)NCBI
ROS_Cfam_1.01108,193,244 - 108,198,874 (+)NCBI
UMICH_Zoey_3.11107,859,799 - 107,865,425 (+)NCBI
UNSW_CanFamBas_1.01107,507,095 - 107,512,719 (+)NCBI
UU_Cfam_GSD_1.01108,342,794 - 108,348,418 (+)NCBI
Ca11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,064,700 - 21,070,330 (-)NCBI
SpeTri2.0NW_0049366642,682,814 - 2,688,583 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CA11
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1641,889,786 - 41,905,358 (-)NCBI
ChlSab1.1 Ensembl641,889,504 - 41,905,561 (-)Ensembl
Ca11
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248325,234,331 - 5,240,038 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 11
Low 8 2 3 4 1 12 2 3
Below cutoff 2 2 1 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000003492   ⟹   ENSSSCP00000003409
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl653,993,393 - 53,999,174 (-)Ensembl
RefSeq Acc Id: NM_001004038   ⟹   NP_001004038
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1653,993,397 - 53,998,644 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005664669   ⟹   XP_005664726
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1653,993,391 - 53,999,357 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013998572   ⟹   XP_013854026
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1653,993,183 - 53,999,106 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001004038 (Get FASTA)   NCBI Sequence Viewer  
  XP_005664726 (Get FASTA)   NCBI Sequence Viewer  
  XP_013854026 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAL78172 (Get FASTA)   NCBI Sequence Viewer  
  Q866X6 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013854026   ⟸   XM_013998572
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005664726   ⟸   XM_005664669
- Peptide Label: isoform X2
- UniProtKB: F1RIQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001004038   ⟸   NM_001004038
- Peptide Label: precursor
- UniProtKB: Q866X6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSSSCP00000003409   ⟸   ENSSSCT00000003492
Protein Domains
Alpha-carbonic anhydrase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003147 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070027855 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000003409 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070047476 UniProtKB/TrEMBL
  ENSSSCP00070047477 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000003492 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070055887 UniProtKB/TrEMBL
  ENSSSCT00070055888 UniProtKB/TrEMBL
Gene3D-CATH 3.10.200.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro alpha_CARP_X/XI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CA_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CA_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:445526 UniProtKB/Swiss-Prot
NCBI Gene CA11 ENTREZGENE
PANTHER PTHR18952 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Carb_anhydrase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ALPHA_CA_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Carb_anhydrase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF51069 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A480JGT2_PIG UniProtKB/TrEMBL
  A0A4X1VZX6_PIG UniProtKB/TrEMBL
  A0A4X1W0M0_PIG UniProtKB/TrEMBL
  CAH11_PIG UniProtKB/Swiss-Prot
  F1RIQ0 ENTREZGENE, UniProtKB/TrEMBL
  Q866X6 ENTREZGENE
UniProt Secondary F1RIP9 UniProtKB/TrEMBL
VGNC ID VGNC:96933 ENTREZGENE