CCM2 (CCM2 scaffold protein) - Rat Genome Database

Name: CCM2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: CCM2 (CCM2 scaffold protein) Sus scrofa

Analyze

Symbol:

CCM2

Name:

CCM2 scaffold protein

RGD ID:

13858608

Description:

INVOLVED IN blood vessel development (ortholog); blood vessel endothelial cell differentiation (ortholog); cell-cell junction organization (ortholog); PARTICIPATES IN p38 MAPK signaling pathway; ASSOCIATED WITH cavernous hemangioma (ortholog); Central Nervous System Vascular Malformations (ortholog); cerebral cavernous malformation (ortholog); FOUND IN cytoplasm (inferred); mitochondrion (inferred); protein-containing complex (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

CCM2 scaffolding protein; cerebral cavernous malformation 2; cerebral cavernous malformations 2 protein

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CCM2 (CCM2 scaffold protein)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Ccm2 (cerebral cavernous malformation 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Ccm2 (CCM2 scaffold protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ccm2 (CCM2 scaffold protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CCM2 (CCM2 scaffold protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CCM2 (CCM2 scaffold protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ccm2 (CCM2 scaffold protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CCM2 (CCM2 scaffold protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ccm2 (CCM2 scaffold protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	50,396,424 - 50,450,132 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	18	50,396,423 - 50,450,442 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	55,227,250 - 55,260,933 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cavernous hemangioma (ISO)

Central Nervous System Vascular Malformations (ISO)

cerebral cavernous malformation (ISO)

cerebral cavernous malformation 2 (ISO)

genetic disease (ISO)

pleomorphic xanthoastrocytoma (ISO)

vascular dementia (ISO)

vasculitis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

blood vessel development (IEA,ISO)

blood vessel endothelial cell differentiation (IEA,ISO)

cell-cell junction organization (IEA,ISO)

endothelial cell development (IEA,ISO)

endothelial tube morphogenesis (IEA,ISO)

heart development (IBA,IEA,ISO)

in utero embryonic development (IEA,ISO)

inner ear development (IEA,ISO)

multicellular organism growth (IEA,ISO)

pericardium development (IEA,ISO)

vasculature development (IEA,ISO)

vasculogenesis (IBA,IEA,ISO)

venous blood vessel morphogenesis (IEA,ISO)

Cellular Component

cytoplasm (IEA)

mitochondrion (IEA)

protein-containing complex (IEA)

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

p38 MAPK signaling pathway (ISO)

References

Additional References at PubMed

PMID:14681463	PMID:30032202

Genomics

Comparative Map Data

CCM2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	50,396,424 - 50,450,132 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	18	50,396,423 - 50,450,442 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	55,227,250 - 55,260,933 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCM2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	44,999,746 - 45,076,470 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	44,999,475 - 45,076,469 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	45,039,345 - 45,116,069 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	45,006,312 - 45,082,594 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	44,813,091 - 44,889,290	NCBI
Celera	7	45,138,311 - 45,215,025 (+)	NCBI		Celera
Cytogenetic Map	7	p13	NCBI
HuRef	7	44,925,168 - 45,000,206 (+)	NCBI		HuRef
CHM1_1	7	45,071,187 - 45,120,010 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	45,160,321 - 45,237,028 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	45,078,823 - 45,155,546 (+)	NCBI

Ccm2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	6,496,887 - 6,546,761 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	6,496,887 - 6,546,744 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	6,546,887 - 6,596,761 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	6,546,887 - 6,596,744 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	6,446,890 - 6,496,764 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	6,446,959 - 6,496,747 (+)	NCBI		MGSCv36	mm8
Celera	11	7,046,830 - 7,080,913 (+)	NCBI		Celera
Cytogenetic Map	11	A1	NCBI
cM Map	11	4.45	NCBI

Ccm2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	85,632,338 - 85,678,016 (+)	NCBI		GRCr8
mRatBN7.2	14	81,418,418 - 81,464,114 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	81,418,236 - 81,464,116 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	85,819,827 - 85,865,388 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	87,059,630 - 87,105,191 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	83,509,226 - 83,554,787 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	86,812,728 - 86,859,408 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	86,813,082 - 86,859,406 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	80,446,382 - 80,492,853 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	87,307,223 - 87,353,553 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	87,348,279 - 87,372,312 (+)	NCBI
Celera	14	80,300,228 - 80,345,851 (+)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

Ccm2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955456	7,227,667 - 7,256,206 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955456	7,232,224 - 7,251,012 (-)	NCBI	ChiLan1.0	ChiLan1.0

CCM2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	49,913,737 - 49,990,336 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	98,238,476 - 98,315,074 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	45,714,413 - 45,791,016 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	45,808,339 - 45,856,966 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	45,808,145 - 45,858,828 (+)	Ensembl	panpan1.1		panPan2

CCM2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	10,347,801 - 10,392,560 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	10,347,145 - 10,394,594 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	2,564,197 - 2,608,955 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	14,251,951 - 14,296,712 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	14,251,983 - 14,273,877 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.0	16	13,885,048 - 13,930,006 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	13,864,560 - 13,909,317 (-)	NCBI		UU_Cfam_GSD_1.0

Ccm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	100,596,897 - 100,670,627 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936478	19,819,675 - 19,882,343 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936478	19,820,092 - 19,882,358 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCM2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	13,606,716 - 13,687,656 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	13,606,472 - 13,656,275 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666062	8,848,862 - 8,922,452 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccm2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	7,308,177 - 7,348,689 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624740	7,308,178 - 7,348,681 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CCM2
2722 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium									1
Low	9	4	3	5	2	23	2	3	2
Below cutoff	1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003134872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013985814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013985815	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013985816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021079069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021079070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021079071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK237795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU855998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01015365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000018216 ⟹ ENSSSCP00000017725

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	18	50,396,424 - 50,430,094 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000041491 ⟹ ENSSSCP00000041256

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	18	50,396,426 - 50,450,132 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000043040 ⟹ ENSSSCP00000047489

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	18	50,396,452 - 50,429,536 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000043444 ⟹ ENSSSCP00000051749

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	18	50,396,453 - 50,429,536 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000053702 ⟹ ENSSSCP00000036042

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	18	50,396,453 - 50,450,110 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000054880 ⟹ ENSSSCP00000047167

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	18	50,396,425 - 50,430,094 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000056765 ⟹ ENSSSCP00000037830

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	18	50,396,423 - 50,430,061 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000088346 ⟹ ENSSSCP00000063757

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	18	50,396,454 - 50,430,086 (-)	Ensembl

RefSeq Acc Id:

XM_003134872 ⟹ XP_003134920

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	18	50,396,423 - 50,430,114 (-)	NCBI

Sequence:

show sequence

TTGGGAGGGGCACCGTGGCCAGACTTCCGCAGCAATGTCCTCGAGCCGACTGTACGGTATCGGC
TGCAAGTGCGGGTGGCCACGGGCTCTGCGTGCTGGAGATCACAAGTGAAAAGAGAAGGATGCAC
GGTAGCTCTCGGCAGAGGGGGAGGAACCAGGATTCCTCCCGAGAGATCGCTGCTCACACTGGCT
TTCCGACGGGGTGTTCCGTGGAGAACGAGCCTGGAATTGTGTCGCCGTTTAAACGCGTGTTCCT
AAAGGGTGAGAAGAGTAGAGATAAGAAAGCCCATGAGAAGGTGACAGAGAGGCGCCCTCTGCAC
ACCGTGGTGCTGTCCCTGCCTGAGCGCGTCGAGCCCGACCGACTGCTGAGCGACTATATCGAGA
AGGAGGTGAAGTATTTAGGTCAGTTAACGTCCATACCAGGGTACCTGAATCCCTCCAGTAGGAC
GGAAATCCTGCATTTCATAGACAACGCAAAGCGAGCCCACCAGCTCCCCGGACACTTGACCCAG
GAGCATGACGCTGTCATCAGCCTGTCTGCCTACAACGTCAAGCTGGCCTGGAGGGACGGGGAGG
ACACCATCCTCAGGGTGCCCATCCATGACATCGCCGCCGTGTCCTACGTGCGGGATGACGCCTC
GCACCTGGTGGTGCTGAAGACAGCCCAGGACCCCGGCATCTCCCCCAGCCAGAGCTTGTGTGCA
GAAAGTTCCAGAGGCCTCACCACAGGCTCCCTGTCGGAGAGCGGCGTGGGGCCTGTGGAGGCCT
GCTGCCTGGTGATCCTGGCCGCGGAGAGCAAGGTCGCCGCCGAAGAGCTGTGCTCCCTGCTCGG
CCAAGTCTTCCAGATCGTGTACACGGAGTCCACCATCGACTTCCTGGACAGAGCCATATTTGAC
GGGGCCTCGACGCCCACCCACCACCTGTCCCTTCACAGCGACGACTCTTCCACAAAGGTGGACC
TGAAGGAGCCCTATGAGACGGAAGCCAGCACGTTCACCTTCCCCGAGTGTGCGCATGCAGGCGG
CGTCTCGCCCTTGTCCTTCTGCATGCAGACGGCGCCCCACGCCAAGACGGTCAGTGAGAGCGAG
CTGAGCGCCACGGCTGCCGAGCTGCTGCAGGACTACATGCTCACGCTGCGCACCAAGCTGTCGT
CGCAGGAGATCCAGCAGTTCGCGGCGCTGCTGCACGAGTACCGCGACGGGGCCTCGGTGCACGA
GTTCTGCATCAACCTGCGGCAGCTCTACGGGGACAGCCGCAAGTTCCTGCTGCTCGGTCTGCGG
CCCTTCATCCCTGAGAAGGACAGCCAGCACTTCGAGAACTTTCTGGAGACCATCGGCGTGAAGG
ACGGCCGCGGCATCATCACCGACAGCTTTGGCAGGTACCGCCGGACCATGAGCTCCACCTCCAC
CTCCACCTCCAACGGGAACAGGGCCGCGGGCAGCTCCGACGACCAGTCGGCCCCCTCGGAGGGG
GACGAGTGGGACCGCATGATCTCGGACATCAGCAATGACATCGAGGCGCTGGGCTGCAGCATGG
ACCCGGACTCGGCCTGACGCCGCCGGGCCCGCGGGCCGCCCTGCTCCTGCTCGTGGGGGCGCCG
GGCGCGGGGGCTGGACCGTGAAGGCGGAACCCTGGCGCGGGCGCCGAAGACAGCGCTGCCCCCA
CCCGCACGAGACCCTGCCTCGGGGGTGGGGGGTGGTCCTGTCAGCCCGTCCCTGGACAGCTGTC
AGTTTTGCACATGACATTTCTATTGAAACTCTCAGAGACCTTAAAAGTTTACCGCAATGTGAAT
AATTTA

hide sequence

RefSeq Acc Id:

XM_013985814 ⟹ XP_013841268

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	18	50,396,423 - 50,430,109 (-)	NCBI

Sequence:

show sequence

AGGGGCACCGTGGCCAGACTTCCGCAGCAATGTCCTCGAGCCGACTGTACGGTATCGGCTGCAA
GTGCGGGTGGCCACGGGCTCTGCGTGCTGGAGAGGGAGGGCTGACATCTGACTCTGTTTTTCAA
CAAGATCACAAGTGAAAAGAGAAGGATGCACGGTAGCTCTCGGCAGAGGGGGAGGAACCAGGAT
TCCTCCCGAGAGATCGCTGCTCACACTGGCTTTCCGACGGGGTGTTCCGTGGAGAACGAGCCTG
GAATTGTGTCGCCGTTTAAACGCGTGTTCCTAAAGGGTGAGAAGAGTAGAGATAAGAAAGCCCA
TGAGAAGGTGACAGAGAGGCGCCCTCTGCACACCGTGGTGCTGTCCCTGCCTGAGCGCGTCGAG
CCCGACCGACTGCTGAGCGACTATATCGAGAAGGAGGTGAAGTATTTAGGTCAGTTAACGTCCA
TACCAGGGTACCTGAATCCCTCCAGTAGGACGGAAATCCTGCATTTCATAGACAACGCAAAGCG
AGCCCACCAGCTCCCCGGACACTTGACCCAGGAGCATGACGCTGTCATCAGCCTGTCTGCCTAC
AACGTCAAGCTGGCCTGGAGGGACGGGGAGGACACCATCCTCAGGGTGCCCATCCATGACATCG
CCGCCGTGTCCTACGTGCGGGATGACGCCTCGCACCTGGTGGTGCTGAAGACAGCCCAGGACCC
CGGCATCTCCCCCAGCCAGAGCTTGTGTGCAGAAAGTTCCAGAGGCCTCACCACAGGCTCCCTG
TCGGAGAGCGGCGTGGGGCCTGTGGAGGCCTGCTGCCTGGTGATCCTGGCCGCGGAGAGCAAGG
TCGCCGCCGAAGAGCTGTGCTCCCTGCTCGGCCAAGTCTTCCAGATCGTGTACACGGAGTCCAC
CATCGACTTCCTGGACAGAGCCATATTTGACGGGGCCTCGACGCCCACCCACCACCTGTCCCTT
CACAGCGACGACTCTTCCACAAAGGTGGACCTGAAGGAGCCCTATGAGACGGAAGCCAGCACGT
TCACCTTCCCCGAGTGTGCGCATGCAGGCGGCGTCTCGCCCTTGTCCTTCTGCATGCAGACGGC
GCCCCACGCCAAGACGGTCAGTGAGAGCGAGCTGAGCGCCACGGCTGCCGAGCTGCTGCAGGAC
TACATGCTCACGCTGCGCACCAAGCTGTCGTCGCAGGAGATCCAGCAGTTCGCGGCGCTGCTGC
ACGAGTACCGCGACGGGGCCTCGGTGCACGAGTTCTGCATCAACCTGCGGCAGCTCTACGGGGA
CAGCCGCAAGTTCCTGCTGCTCGGTCTGCGGCCCTTCATCCCTGAGAAGGACAGCCAGCACTTC
GAGAACTTTCTGGAGACCATCGGCGTGAAGGACGGCCGCGGCATCATCACCGACAGCTTTGGCA
GGTACCGCCGGACCATGAGCTCCACCTCCACCTCCACCTCCAACGGGAACAGGGCCGCGGGCAG
CTCCGACGACCAGTCGGCCCCCTCGGAGGGGGACGAGTGGGACCGCATGATCTCGGACATCAGC
AATGACATCGAGGCGCTGGGCTGCAGCATGGACCCGGACTCGGCCTGACGCCGCCGGGCCCGCG
GGCCGCCCTGCTCCTGCTCGTGGGGGCGCCGGGCGCGGGGGCTGGACCGTGAAGGCGGAACCCT
GGCGCGGGCGCCGAAGACAGCGCTGCCCCCACCCGCACGAGACCCTGCCTCGGGGGTGGGGGGT
GGTCCTGTCAGCCCGTCCCTGGACAGCTGTCAGTTTTGCACATGACATTTCTATTGAAACTCTC
AGAGACCTTAAAAGTTTACCGCAATGTGAATAATTTA

hide sequence

RefSeq Acc Id:

XM_013985815 ⟹ XP_013841269

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	18	50,396,423 - 50,430,117 (-)	NCBI

Sequence:

show sequence

GTGTTGGGAGGGGCACCGTGGCCAGACTTCCGCAGCAATGTCCTCGAGCCGACTGTACGGTATC
GGCTGCAAGTGCGGGTGGCCACGGGCTCTGCGTGCTGGAGAGGGAGGGCTGACATCTGACTCTG
TTTTTCAACAAGATCACAAGTGAAAAGAGAAGGATGCACGGTAGCTCTCGGCAGAGGGGGAGGA
ACCAGGATTCCTCCCGAGAGATCGCTGCTCACACTGGCTTTCCGACGGGGTGTTCCGTGGAGAA
CGAGTATTTAGGTCAGTTAACGTCCATACCAGGGTACCTGAATCCCTCCAGTAGGACGGAAATC
CTGCATTTCATAGACAACGCAAAGCGAGCCCACCAGCTCCCCGGACACTTGACCCAGGAGCATG
ACGCTGTCATCAGCCTGTCTGCCTACAACGTCAAGCTGGCCTGGAGGGACGGGGAGGACACCAT
CCTCAGGGTGCCCATCCATGACATCGCCGCCGTGTCCTACGTGCGGGATGACGCCTCGCACCTG
GTGGTGCTGAAGACAGCCCAGGACCCCGGCATCTCCCCCAGCCAGAGCTTGTGTGCAGAAAGTT
CCAGAGGCCTCACCACAGGCTCCCTGTCGGAGAGCGGCGTGGGGCCTGTGGAGGCCTGCTGCCT
GGTGATCCTGGCCGCGGAGAGCAAGGTCGCCGCCGAAGAGCTGTGCTCCCTGCTCGGCCAAGTC
TTCCAGATCGTGTACACGGAGTCCACCATCGACTTCCTGGACAGAGCCATATTTGACGGGGCCT
CGACGCCCACCCACCACCTGTCCCTTCACAGCGACGACTCTTCCACAAAGGTGGACCTGAAGGA
GCCCTATGAGACGGAAGCCAGCACGTTCACCTTCCCCGAGTGTGCGCATGCAGGCGGCGTCTCG
CCCTTGTCCTTCTGCATGCAGACGGCGCCCCACGCCAAGACGGTCAGTGAGAGCGAGCTGAGCG
CCACGGCTGCCGAGCTGCTGCAGGACTACATGCTCACGCTGCGCACCAAGCTGTCGTCGCAGGA
GATCCAGCAGTTCGCGGCGCTGCTGCACGAGTACCGCGACGGGGCCTCGGTGCACGAGTTCTGC
ATCAACCTGCGGCAGCTCTACGGGGACAGCCGCAAGTTCCTGCTGCTCGGTCTGCGGCCCTTCA
TCCCTGAGAAGGACAGCCAGCACTTCGAGAACTTTCTGGAGACCATCGGCGTGAAGGACGGCCG
CGGCATCATCACCGACAGCTTTGGCAGGTACCGCCGGACCATGAGCTCCACCTCCACCTCCACC
TCCAACGGGAACAGGGCCGCGGGCAGCTCCGACGACCAGTCGGCCCCCTCGGAGGGGGACGAGT
GGGACCGCATGATCTCGGACATCAGCAATGACATCGAGGCGCTGGGCTGCAGCATGGACCCGGA
CTCGGCCTGACGCCGCCGGGCCCGCGGGCCGCCCTGCTCCTGCTCGTGGGGGCGCCGGGCGCGG
GGGCTGGACCGTGAAGGCGGAACCCTGGCGCGGGCGCCGAAGACAGCGCTGCCCCCACCCGCAC
GAGACCCTGCCTCGGGGGTGGGGGGTGGTCCTGTCAGCCCGTCCCTGGACAGCTGTCAGTTTTG
CACATGACATTTCTATTGAAACTCTCAGAGACCTTAAAAGTTTACCGCAATGTGAATAATTTA

hide sequence

RefSeq Acc Id:

XM_013985816 ⟹ XP_013841270

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	18	50,396,423 - 50,430,117 (-)	NCBI

Sequence:

show sequence

GTGTTGGGAGGGGCACCGTGGCCAGACTTCCGCAGCAATGTCCTCGAGCCGACTGTACGGTATC
GGCTGCAAGTGCGGGTGGCCACGGGCTCTGCGTGCTGGAGATCACAAGTGAAAAGAGAAGGATG
CACGGTAGCTCTCGGCAGAGGGGGAGGAACCAGGATTCCTCCCGAGAGATCGCTGCTCACACTG
GCTTTCCGACGGGGTGTTCCGTGGAGAACGAGTATTTAGGTCAGTTAACGTCCATACCAGGGTA
CCTGAATCCCTCCAGTAGGACGGAAATCCTGCATTTCATAGACAACGCAAAGCGAGCCCACCAG
CTCCCCGGACACTTGACCCAGGAGCATGACGCTGTCATCAGCCTGTCTGCCTACAACGTCAAGC
TGGCCTGGAGGGACGGGGAGGACACCATCCTCAGGGTGCCCATCCATGACATCGCCGCCGTGTC
CTACGTGCGGGATGACGCCTCGCACCTGGTGGTGCTGAAGACAGCCCAGGACCCCGGCATCTCC
CCCAGCCAGAGCTTGTGTGCAGAAAGTTCCAGAGGCCTCACCACAGGCTCCCTGTCGGAGAGCG
GCGTGGGGCCTGTGGAGGCCTGCTGCCTGGTGATCCTGGCCGCGGAGAGCAAGGTCGCCGCCGA
AGAGCTGTGCTCCCTGCTCGGCCAAGTCTTCCAGATCGTGTACACGGAGTCCACCATCGACTTC
CTGGACAGAGCCATATTTGACGGGGCCTCGACGCCCACCCACCACCTGTCCCTTCACAGCGACG
ACTCTTCCACAAAGGTGGACCTGAAGGAGCCCTATGAGACGGAAGCCAGCACGTTCACCTTCCC
CGAGTGTGCGCATGCAGGCGGCGTCTCGCCCTTGTCCTTCTGCATGCAGACGGCGCCCCACGCC
AAGACGGTCAGTGAGAGCGAGCTGAGCGCCACGGCTGCCGAGCTGCTGCAGGACTACATGCTCA
CGCTGCGCACCAAGCTGTCGTCGCAGGAGATCCAGCAGTTCGCGGCGCTGCTGCACGAGTACCG
CGACGGGGCCTCGGTGCACGAGTTCTGCATCAACCTGCGGCAGCTCTACGGGGACAGCCGCAAG
TTCCTGCTGCTCGGTCTGCGGCCCTTCATCCCTGAGAAGGACAGCCAGCACTTCGAGAACTTTC
TGGAGACCATCGGCGTGAAGGACGGCCGCGGCATCATCACCGACAGCTTTGGCAGGTACCGCCG
GACCATGAGCTCCACCTCCACCTCCACCTCCAACGGGAACAGGGCCGCGGGCAGCTCCGACGAC
CAGTCGGCCCCCTCGGAGGGGGACGAGTGGGACCGCATGATCTCGGACATCAGCAATGACATCG
AGGCGCTGGGCTGCAGCATGGACCCGGACTCGGCCTGACGCCGCCGGGCCCGCGGGCCGCCCTG
CTCCTGCTCGTGGGGGCGCCGGGCGCGGGGGCTGGACCGTGAAGGCGGAACCCTGGCGCGGGCG
CCGAAGACAGCGCTGCCCCCACCCGCACGAGACCCTGCCTCGGGGGTGGGGGGTGGTCCTGTCA
GCCCGTCCCTGGACAGCTGTCAGTTTTGCACATGACATTTCTATTGAAACTCTCAGAGACCTTA
AAAGTTTACCGCAATGTGAATAATTTA

hide sequence

RefSeq Acc Id:

XM_021079069 ⟹ XP_020934728

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	18	50,396,423 - 50,429,954 (-)	NCBI

Sequence:

show sequence

GTTTAGTTAGATGGGCTGGTTTAGTTAGATGGGCTGGTTTAGTGCGAAGATGTGTGGGTTTACT
TTGGGTCTTTTGGCGGGGGGCGTGCTTGCAGCATATGGAAATTTCCCGGCCAGGGATCGAACCT
GCACCACAGCAGTGACCTGAGCCGCTGCAGTGACAACCCCTATGCTCAACTCGCGGTGCCACAA
AAAAACTCTTACCGTTTGTGCTCGCAGTCTCTTTGGATTTTGCCAGCAGTCTCGGGGTGTCGCC
TGCTCCTTCAACCTTTTTAAAAACTGCGGACGGCTTCACTGGGGCGTGCAGAAGGAAGCTGTGG
TTTCTGGTCTTCCTGTTCATTCACATGCTTTTTTCAGAGGGAGGGCTGACATCTGACTCTGTTT
TTCAACAAGATCACAAGTGAAAAGAGAAGGATGCACGGTAGCTCTCGGCAGAGGGGGAGGAACC
AGGATTCCTCCCGAGAGATCGCTGCTCACACTGGCTTTCCGACGGGGTGTTCCGTGGAGAACGA
GCCTGGAATTGTGTCGCCGTTTAAACGCGTGTTCCTAAAGGGTGAGAAGAGTAGAGATAAGAAA
GCCCATGAGAAGGTGACAGAGAGGCGCCCTCTGCACACCGTGGTGCTGTCCCTGCCTGAGCGCG
TCGAGCCCGACCGACTGCTGAGCGACTATATCGAGAAGGAGGTGAAGTATTTAGGTCAGTTAAC
GTCCATACCAGGGTACCTGAATCCCTCCAGTAGGACGGAAATCCTGCATTTCATAGACAACGCA
AAGCGAGCCCACCAGCTCCCCGGACACTTGACCCAGGAGCATGACGCTGTCATCAGCCTGTCTG
CCTACAACGTCAAGCTGGCCTGGAGGGACGGGGAGGACACCATCCTCAGGGTGCCCATCCATGA
CATCGCCGCCGTGTCCTACGTGCGGGATGACGCCTCGCACCTGGTGGTGCTGAAGACAGCCCAG
GACCCCGGCATCTCCCCCAGCCAGAGCTTGTGTGCAGAAAGTTCCAGAGGCCTCACCACAGGCT
CCCTGTCGGAGAGCGGCGTGGGGCCTGTGGAGGCCTGCTGCCTGGTGATCCTGGCCGCGGAGAG
CAAGGTCGCCGCCGAAGAGCTGTGCTCCCTGCTCGGCCAAGTCTTCCAGATCGTGTACACGGAG
TCCACCATCGACTTCCTGGACAGAGCCATATTTGACGGGGCCTCGACGCCCACCCACCACCTGT
CCCTTCACAGCGACGACTCTTCCACAAAGGTGGACCTGAAGGAGCCCTATGAGACGGAAGCCAG
CACGTTCACCTTCCCCGAGTGTGCGCATGCAGGCGGCGTCTCGCCCTTGTCCTTCTGCATGCAG
ACGGCGCCCCACGCCAAGACGGTCAGTGAGAGCGAGCTGAGCGCCACGGCTGCCGAGCTGCTGC
AGGACTACATGCTCACGCTGCGCACCAAGCTGTCGTCGCAGGAGATCCAGCAGTTCGCGGCGCT
GCTGCACGAGTACCGCGACGGGGCCTCGGTGCACGAGTTCTGCATCAACCTGCGGCAGCTCTAC
GGGGACAGCCGCAAGTTCCTGCTGCTCGGTCTGCGGCCCTTCATCCCTGAGAAGGACAGCCAGC
ACTTCGAGAACTTTCTGGAGACCATCGGCGTGAAGGACGGCCGCGGCATCATCACCGACAGCTT
TGGCAGGTACCGCCGGACCATGAGCTCCACCTCCACCTCCACCTCCAACGGGAACAGGGCCGCG
GGCAGCTCCGACGACCAGTCGGCCCCCTCGGAGGGGGACGAGTGGGACCGCATGATCTCGGACA
TCAGCAATGACATCGAGGCGCTGGGCTGCAGCATGGACCCGGACTCGGCCTGACGCCGCCGGGC
CCGCGGGCCGCCCTGCTCCTGCTCGTGGGGGCGCCGGGCGCGGGGGCTGGACCGTGAAGGCGGA
ACCCTGGCGCGGGCGCCGAAGACAGCGCTGCCCCCACCCGCACGAGACCCTGCCTCGGGGGTGG
GGGGTGGTCCTGTCAGCCCGTCCCTGGACAGCTGTCAGTTTTGCACATGACATTTCTATTGAAA
CTCTCAGAGACCTTAAAAGTTTACCGCAATGTGAATAATTTA

hide sequence

RefSeq Acc Id:

XM_021079070 ⟹ XP_020934729

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	18	50,396,423 - 50,450,117 (-)	NCBI

Sequence:

show sequence

GAGCGGCGGCGGCCGCGGGGCCGGGGCGAGCATGTAGCGGCCGCGGGCGGCGCGGGGCTCCCGG
GGCGGGCCGGGCCGCGGGGGCCGCTCGCGGCGACATGGAGGAAGAGAGCAAGAAGGGCAAGAAG
TATTTAGGTCAGTTAACGTCCATACCAGGGTACCTGAATCCCTCCAGTAGGACGGAAATCCTGC
ATTTCATAGACAACGCAAAGCGAGCCCACCAGCTCCCCGGACACTTGACCCAGGAGCATGACGC
TGTCATCAGCCTGTCTGCCTACAACGTCAAGCTGGCCTGGAGGGACGGGGAGGACACCATCCTC
AGGGTGCCCATCCATGACATCGCCGCCGTGTCCTACGTGCGGGATGACGCCTCGCACCTGGTGG
TGCTGAAGACAGCCCAGGACCCCGGCATCTCCCCCAGCCAGAGCTTGTGTGCAGAAAGTTCCAG
AGGCCTCACCACAGGCTCCCTGTCGGAGAGCGGCGTGGGGCCTGTGGAGGCCTGCTGCCTGGTG
ATCCTGGCCGCGGAGAGCAAGGTCGCCGCCGAAGAGCTGTGCTCCCTGCTCGGCCAAGTCTTCC
AGATCGTGTACACGGAGTCCACCATCGACTTCCTGGACAGAGCCATATTTGACGGGGCCTCGAC
GCCCACCCACCACCTGTCCCTTCACAGCGACGACTCTTCCACAAAGGTGGACCTGAAGGAGCCC
TATGAGACGGAAGCCAGCACGTTCACCTTCCCCGAGTGTGCGCATGCAGGCGGCGTCTCGCCCT
TGTCCTTCTGCATGCAGACGGCGCCCCACGCCAAGACGGTCAGTGAGAGCGAGCTGAGCGCCAC
GGCTGCCGAGCTGCTGCAGGACTACATGCTCACGCTGCGCACCAAGCTGTCGTCGCAGGAGATC
CAGCAGTTCGCGGCGCTGCTGCACGAGTACCGCGACGGGGCCTCGGTGCACGAGTTCTGCATCA
ACCTGCGGCAGCTCTACGGGGACAGCCGCAAGTTCCTGCTGCTCGGTCTGCGGCCCTTCATCCC
TGAGAAGGACAGCCAGCACTTCGAGAACTTTCTGGAGACCATCGGCGTGAAGGACGGCCGCGGC
ATCATCACCGACAGCTTTGGCAGGTACCGCCGGACCATGAGCTCCACCTCCACCTCCACCTCCA
ACGGGAACAGGGCCGCGGGCAGCTCCGACGACCAGTCGGCCCCCTCGGAGGGGGACGAGTGGGA
CCGCATGATCTCGGACATCAGCAATGACATCGAGGCGCTGGGCTGCAGCATGGACCCGGACTCG
GCCTGACGCCGCCGGGCCCGCGGGCCGCCCTGCTCCTGCTCGTGGGGGCGCCGGGCGCGGGGGC
TGGACCGTGAAGGCGGAACCCTGGCGCGGGCGCCGAAGACAGCGCTGCCCCCACCCGCACGAGA
CCCTGCCTCGGGGGTGGGGGGTGGTCCTGTCAGCCCGTCCCTGGACAGCTGTCAGTTTTGCACA
TGACATTTCTATTGAAACTCTCAGAGACCTTAAAAGTTTACCGCAATGTGAATAATTTA

hide sequence

RefSeq Acc Id:

XM_021079071 ⟹ XP_020934730

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	18	50,396,423 - 50,450,442 (-)	NCBI

Sequence:

show sequence

AACGCTGGAGCCGCTCGTGCGGCCCTGAGGCGCCGGGCTTGTGGGCGCGGGCTGCAGGCCCTCC
CTGAAGGGCGTGGGGTGGGACAGGGGCGCGACAGGCGCGCTCCCGCGGCCCTGAAAGGGGCGGG
CAGGGCAGGCGCGTTCTCGGCCGCCTGGAAGGGCTGGGGGCGGAGCGTGTGGGCCGAGGGGGCG
TGCGCGCGCGGGGCGGGGCGTGGTCGCGGGGGCGGGGCTGCGCCCTCGGTCCGGAAGTGCGGGG
TGCGGGGTGCAGGGCGCGGACGGCCCCTGGCGGCCGCGGGAGGAGACTGCGGCCAGGCTAGCGG
CGCAGGAGCGGCGGCGGCCGCGGGGCCGGGGCGAGCATGTAGCGGCCGCGGGCGGCGCGGGGCT
CCCGGGGCGGGCCGGGCCGCGGGGGCCGCTCGCGGCGACATGGAGGAAGAGAGCAAGAAGGGCA
AGAAGCCTGGAATTGTGTCGCCGTTTAAACGCGTGTTCCTAAAGGGTGAGAAGAGTAGAGATAA
GAAAGCCCATGAGAAGGTGACAGAGAGGCGCCCTCTGCACACCGTGGTGCTGTCCCTGCCTGAG
CGCGTCGAGCCCGACCGACTGCTGAGCGACTATATCGAGAAGGAGGTGAAGTATTTAGGTCAGT
TAACGTCCATACCAGGGTACCTGAATCCCTCCAGTAGGACGGAAATCCTGCATTTCATAGACAA
CGCAAAGCGAGCCCACCAGCTCCCCGGACACTTGACCCAGGAGCATGACGCTGTCATCAGCCTG
TCTGCCTACAACGTCAAGCTGGCCTGGAGGGACGGGGAGGACACCATCCTCAGGGTGCCCATCC
ATGACATCGCCGCCGTGTCCTACGTGCGGGATGACGCCTCGCACCTGGTGGTGCTGAAGACAGC
CCAGGACCCCGGCATCTCCCCCAGCCAGAGCTTGTGTGCAGAAAGTTCCAGAGGCCTCACCACA
GGCTCCCTGTCGGAGAGCGGCGTGGGGCCTGTGGAGGCCTGCTGCCTGGTGATCCTGGCCGCGG
AGAGCAAGGTCGCCGCCGAAGAGCTGTGCTCCCTGCTCGGCCAAGTCTTCCAGATCGTGTACAC
GGAGTCCACCATCGACTTCCTGGACAGAGCCATATTTGACGGGGCCTCGACGCCCACCCACCAC
CTGTCCCTTCACAGCGACGACTCTTCCACAAAGGTGGACCTGAAGGAGCCCTATGAGACGGAAG
CCAGCACGTTCACCTTCCCCGAGTGTGCGCATGCAGGCGGCGTCTCGCCCTTGTCCTTCTGCAT
GCAGACGGCGCCCCACGCCAAGACGGTCAGTGAGAGCGAGCTGAGCGCCACGGCTGCCGAGCTG
CTGCAGGACTACATGCTCACGCTGCGCACCAAGCTGTCGTCGCAGGAGATCCAGCAGTTCGCGG
CGCTGCTGCACGAGTACCGCGACGGGGCCTCGGTGCACGAGTTCTGCATCAACCTGCGGCAGCT
CTACGGGGACAGCCGCAAGTTCCTGCTGCTCGGTCTGCGGCCCTTCATCCCTGAGAAGGACAGC
CAGCACTTCGAGAACTTTCTGGAGACCATCGGCGTGAAGGACGGCCGCGGCATCATCACCGACA
GCTTTGGCAGGTACCGCCGGACCATGAGCTCCACCTCCACCTCCACCTCCAACGGGAACAGGGC
CGCGGGCAGCTCCGACGACCAGTCGGCCCCCTCGGAGGGGGACGAGTGGGACCGCATGATCTCG
GACATCAGCAATGACATCGAGGCGCTGGGCTGCAGCATGGACCCGGACTCGGCCTGACGCCGCC
GGGCCCGCGGGCCGCCCTGCTCCTGCTCGTGGGGGCGCCGGGCGCGGGGGCTGGACCGTGAAGG
CGGAACCCTGGCGCGGGCGCCGAAGACAGCGCTGCCCCCACCCGCACGAGACCCTGCCTCGGGG
GTGGGGGGTGGTCCTGTCAGCCCGTCCCTGGACAGCTGTCAGTTTTGCACATGACATTTCTATT
GAAACTCTCAGAGACCTTAAAAGTTTACCGCAATGTGAATAATTTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003134920	(Get FASTA)	NCBI Sequence Viewer
	XP_013841268	(Get FASTA)	NCBI Sequence Viewer
	XP_013841269	(Get FASTA)	NCBI Sequence Viewer
	XP_013841270	(Get FASTA)	NCBI Sequence Viewer
	XP_020934728	(Get FASTA)	NCBI Sequence Viewer
	XP_020934729	(Get FASTA)	NCBI Sequence Viewer
	XP_020934730	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000017725
	ENSSSCP00000017725.2
	ENSSSCP00000036042
	ENSSSCP00000036042.1
	ENSSSCP00000041256
	ENSSSCP00000041256.1
	ENSSSCP00000047167.1
	ENSSSCP00000051749
	ENSSSCP00000051749.2
	ENSSSCP00000063757.1
	ENSSSCP00015000861.1
	ENSSSCP00015000867.1
	ENSSSCP00015000874.1
	ENSSSCP00015000876.1
	ENSSSCP00030020248.1
	ENSSSCP00030020251.1
	ENSSSCP00030020266.1
	ENSSSCP00030020270.1
	ENSSSCP00030020274.1
	ENSSSCP00030020292.1
	ENSSSCP00030020303.1
	ENSSSCP00035035679.1
	ENSSSCP00035035682.1
	ENSSSCP00035035685.1
	ENSSSCP00035035689.1
	ENSSSCP00035035695.1
	ENSSSCP00035035699.1
	ENSSSCP00035035702.1
	ENSSSCP00040008613.1
	ENSSSCP00040008618.1
	ENSSSCP00040008622.1
	ENSSSCP00040008629.1
	ENSSSCP00040008639.1
	ENSSSCP00040008643.1
	ENSSSCP00040008647.1
	ENSSSCP00045038335.1
	ENSSSCP00045038411.1
	ENSSSCP00045038502.1
	ENSSSCP00045038561.1
	ENSSSCP00045038655.1
	ENSSSCP00045038729.1
	ENSSSCP00045038799.1
	ENSSSCP00050021333.1
	ENSSSCP00050021334.1
	ENSSSCP00050021338.1
	ENSSSCP00050021339.1
	ENSSSCP00050021342.1
	ENSSSCP00055035994.1
	ENSSSCP00055036070.1
	ENSSSCP00055036153.1
	ENSSSCP00055036241.1
	ENSSSCP00055036352.1
	ENSSSCP00055036436.1
	ENSSSCP00055036532.1
	ENSSSCP00060003173.1
	ENSSSCP00060003185.1
	ENSSSCP00065008575.1
	ENSSSCP00065008582.1
	ENSSSCP00065008584.1
	ENSSSCP00065008587.1
	ENSSSCP00065008597.1
	ENSSSCP00065008601.1

RefSeq Acc Id:	XP_020934730 ⟸ XM_021079071
- Peptide Label:	isoform X4
- UniProtKB:	A0A287ABS0 (UniProtKB/TrEMBL), A0A480Q6D6 (UniProtKB/TrEMBL), A0A8D1DLJ9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEEESKKGKKPGIVSPFKRVFLKGEKSRDKKAHEKVTERRPLHTVVLSLPERVEPDRLLSDYIE KEVKYLGQLTSIPGYLNPSSRTEILHFIDNAKRAHQLPGHLTQEHDAVISLSAYNVKLAWRDGE DTILRVPIHDIAAVSYVRDDASHLVVLKTAQDPGISPSQSLCAESSRGLTTGSLSESGVGPVEA CCLVILAAESKVAAEELCSLLGQVFQIVYTESTIDFLDRAIFDGASTPTHHLSLHSDDSSTKVD LKEPYETEASTFTFPECAHAGGVSPLSFCMQTAPHAKTVSESELSATAAELLQDYMLTLRTKLS SQEIQQFAALLHEYRDGASVHEFCINLRQLYGDSRKFLLLGLRPFIPEKDSQHFENFLETIGVK DGRGIITDSFGRYRRTMSSTSTSTSNGNRAAGSSDDQSAPSEGDEWDRMISDISNDIEALGCSM DPDSA hide sequence

RefSeq Acc Id:	XP_020934729 ⟸ XM_021079070
- Peptide Label:	isoform X3
- UniProtKB:	A0A286ZWP0 (UniProtKB/TrEMBL), A0A8D1XNF7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEEESKKGKKYLGQLTSIPGYLNPSSRTEILHFIDNAKRAHQLPGHLTQEHDAVISLSAYNVKL AWRDGEDTILRVPIHDIAAVSYVRDDASHLVVLKTAQDPGISPSQSLCAESSRGLTTGSLSESG VGPVEACCLVILAAESKVAAEELCSLLGQVFQIVYTESTIDFLDRAIFDGASTPTHHLSLHSDD SSTKVDLKEPYETEASTFTFPECAHAGGVSPLSFCMQTAPHAKTVSESELSATAAELLQDYMLT LRTKLSSQEIQQFAALLHEYRDGASVHEFCINLRQLYGDSRKFLLLGLRPFIPEKDSQHFENFL ETIGVKDGRGIITDSFGRYRRTMSSTSTSTSNGNRAAGSSDDQSAPSEGDEWDRMISDISNDIE ALGCSMDPDSA hide sequence

RefSeq Acc Id:	XP_013841270 ⟸ XM_013985816
- Peptide Label:	isoform X2
- UniProtKB:	A0A8D1MEV8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHGSSRQRGRNQDSSREIAAHTGFPTGCSVENEYLGQLTSIPGYLNPSSRTEILHFIDNAKRAH QLPGHLTQEHDAVISLSAYNVKLAWRDGEDTILRVPIHDIAAVSYVRDDASHLVVLKTAQDPGI SPSQSLCAESSRGLTTGSLSESGVGPVEACCLVILAAESKVAAEELCSLLGQVFQIVYTESTID FLDRAIFDGASTPTHHLSLHSDDSSTKVDLKEPYETEASTFTFPECAHAGGVSPLSFCMQTAPH AKTVSESELSATAAELLQDYMLTLRTKLSSQEIQQFAALLHEYRDGASVHEFCINLRQLYGDSR KFLLLGLRPFIPEKDSQHFENFLETIGVKDGRGIITDSFGRYRRTMSSTSTSTSNGNRAAGSSD DQSAPSEGDEWDRMISDISNDIEALGCSMDPDSA hide sequence

RefSeq Acc Id:	XP_013841269 ⟸ XM_013985815
- Peptide Label:	isoform X2
- UniProtKB:	A0A8D1MEV8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHGSSRQRGRNQDSSREIAAHTGFPTGCSVENEYLGQLTSIPGYLNPSSRTEILHFIDNAKRAH QLPGHLTQEHDAVISLSAYNVKLAWRDGEDTILRVPIHDIAAVSYVRDDASHLVVLKTAQDPGI SPSQSLCAESSRGLTTGSLSESGVGPVEACCLVILAAESKVAAEELCSLLGQVFQIVYTESTID FLDRAIFDGASTPTHHLSLHSDDSSTKVDLKEPYETEASTFTFPECAHAGGVSPLSFCMQTAPH AKTVSESELSATAAELLQDYMLTLRTKLSSQEIQQFAALLHEYRDGASVHEFCINLRQLYGDSR KFLLLGLRPFIPEKDSQHFENFLETIGVKDGRGIITDSFGRYRRTMSSTSTSTSNGNRAAGSSD DQSAPSEGDEWDRMISDISNDIEALGCSMDPDSA hide sequence

RefSeq Acc Id:	XP_003134920 ⟸ XM_003134872
- Peptide Label:	isoform X1
- UniProtKB:	F1ST61 (UniProtKB/TrEMBL), A0A480NT24 (UniProtKB/TrEMBL), A0A8D1ASX8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHGSSRQRGRNQDSSREIAAHTGFPTGCSVENEPGIVSPFKRVFLKGEKSRDKKAHEKVTERRP LHTVVLSLPERVEPDRLLSDYIEKEVKYLGQLTSIPGYLNPSSRTEILHFIDNAKRAHQLPGHL TQEHDAVISLSAYNVKLAWRDGEDTILRVPIHDIAAVSYVRDDASHLVVLKTAQDPGISPSQSL CAESSRGLTTGSLSESGVGPVEACCLVILAAESKVAAEELCSLLGQVFQIVYTESTIDFLDRAI FDGASTPTHHLSLHSDDSSTKVDLKEPYETEASTFTFPECAHAGGVSPLSFCMQTAPHAKTVSE SELSATAAELLQDYMLTLRTKLSSQEIQQFAALLHEYRDGASVHEFCINLRQLYGDSRKFLLLG LRPFIPEKDSQHFENFLETIGVKDGRGIITDSFGRYRRTMSSTSTSTSNGNRAAGSSDDQSAPS EGDEWDRMISDISNDIEALGCSMDPDSA hide sequence

RefSeq Acc Id:	XP_013841268 ⟸ XM_013985814
- Peptide Label:	isoform X1
- UniProtKB:	F1ST61 (UniProtKB/TrEMBL), A0A480NT24 (UniProtKB/TrEMBL), A0A8D1ASX8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHGSSRQRGRNQDSSREIAAHTGFPTGCSVENEPGIVSPFKRVFLKGEKSRDKKAHEKVTERRP LHTVVLSLPERVEPDRLLSDYIEKEVKYLGQLTSIPGYLNPSSRTEILHFIDNAKRAHQLPGHL TQEHDAVISLSAYNVKLAWRDGEDTILRVPIHDIAAVSYVRDDASHLVVLKTAQDPGISPSQSL CAESSRGLTTGSLSESGVGPVEACCLVILAAESKVAAEELCSLLGQVFQIVYTESTIDFLDRAI FDGASTPTHHLSLHSDDSSTKVDLKEPYETEASTFTFPECAHAGGVSPLSFCMQTAPHAKTVSE SELSATAAELLQDYMLTLRTKLSSQEIQQFAALLHEYRDGASVHEFCINLRQLYGDSRKFLLLG LRPFIPEKDSQHFENFLETIGVKDGRGIITDSFGRYRRTMSSTSTSTSNGNRAAGSSDDQSAPS EGDEWDRMISDISNDIEALGCSMDPDSA hide sequence

RefSeq Acc Id:	XP_020934728 ⟸ XM_021079069
- Peptide Label:	isoform X1
- UniProtKB:	F1ST61 (UniProtKB/TrEMBL), A0A480NT24 (UniProtKB/TrEMBL), A0A8D1ASX8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHGSSRQRGRNQDSSREIAAHTGFPTGCSVENEPGIVSPFKRVFLKGEKSRDKKAHEKVTERRP LHTVVLSLPERVEPDRLLSDYIEKEVKYLGQLTSIPGYLNPSSRTEILHFIDNAKRAHQLPGHL TQEHDAVISLSAYNVKLAWRDGEDTILRVPIHDIAAVSYVRDDASHLVVLKTAQDPGISPSQSL CAESSRGLTTGSLSESGVGPVEACCLVILAAESKVAAEELCSLLGQVFQIVYTESTIDFLDRAI FDGASTPTHHLSLHSDDSSTKVDLKEPYETEASTFTFPECAHAGGVSPLSFCMQTAPHAKTVSE SELSATAAELLQDYMLTLRTKLSSQEIQQFAALLHEYRDGASVHEFCINLRQLYGDSRKFLLLG LRPFIPEKDSQHFENFLETIGVKDGRGIITDSFGRYRRTMSSTSTSTSNGNRAAGSSDDQSAPS EGDEWDRMISDISNDIEALGCSMDPDSA hide sequence

RefSeq Acc Id:

ENSSSCP00000047167 ⟸ ENSSSCT00000054880

RefSeq Acc Id:

ENSSSCP00000063757 ⟸ ENSSSCT00000088346

RefSeq Acc Id:

ENSSSCP00000041256 ⟸ ENSSSCT00000041491

RefSeq Acc Id:

ENSSSCP00000037830 ⟸ ENSSSCT00000056765

RefSeq Acc Id:

ENSSSCP00000036042 ⟸ ENSSSCT00000053702

RefSeq Acc Id:

ENSSSCP00000047489 ⟸ ENSSSCT00000043040

RefSeq Acc Id:

ENSSSCP00000017725 ⟸ ENSSSCT00000018216

RefSeq Acc Id:

ENSSSCP00000051749 ⟸ ENSSSCT00000043444

Protein Domains

Cerebral cavernous malformations 2 harmonin- PID

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000016734	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015002204	UniProtKB/TrEMBL
	ENSSSCG00030032618	UniProtKB/TrEMBL
	ENSSSCG00035063741	UniProtKB/TrEMBL
	ENSSSCG00040015229	UniProtKB/TrEMBL
	ENSSSCG00045032222	UniProtKB/TrEMBL
	ENSSSCG00050037799	UniProtKB/TrEMBL
	ENSSSCG00055022983	UniProtKB/TrEMBL
	ENSSSCG00060006789	UniProtKB/TrEMBL
	ENSSSCG00065015994	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000018216	ENTREZGENE
	ENSSSCT00000018216.3	UniProtKB/TrEMBL
	ENSSSCT00000041491	ENTREZGENE
	ENSSSCT00000041491.2	UniProtKB/TrEMBL
	ENSSSCT00000043444	ENTREZGENE
	ENSSSCT00000043444.2	UniProtKB/TrEMBL
	ENSSSCT00000053702	ENTREZGENE
	ENSSSCT00000053702.3	UniProtKB/TrEMBL
	ENSSSCT00000054880.3	UniProtKB/TrEMBL
	ENSSSCT00000088346.2	UniProtKB/TrEMBL
	ENSSSCT00015002706.1	UniProtKB/TrEMBL
	ENSSSCT00015002718.1	UniProtKB/TrEMBL
	ENSSSCT00015002738.1	UniProtKB/TrEMBL
	ENSSSCT00015002753.1	UniProtKB/TrEMBL
	ENSSSCT00030045079.1	UniProtKB/TrEMBL
	ENSSSCT00030045090.1	UniProtKB/TrEMBL
	ENSSSCT00030045114.1	UniProtKB/TrEMBL
	ENSSSCT00030045120.1	UniProtKB/TrEMBL
	ENSSSCT00030045126.1	UniProtKB/TrEMBL
	ENSSSCT00030045160.1	UniProtKB/TrEMBL
	ENSSSCT00030045183.1	UniProtKB/TrEMBL
	ENSSSCT00035085718.1	UniProtKB/TrEMBL
	ENSSSCT00035085722.1	UniProtKB/TrEMBL
	ENSSSCT00035085731.1	UniProtKB/TrEMBL
	ENSSSCT00035085740.1	UniProtKB/TrEMBL
	ENSSSCT00035085756.1	UniProtKB/TrEMBL
	ENSSSCT00035085764.1	UniProtKB/TrEMBL
	ENSSSCT00035085768.1	UniProtKB/TrEMBL
	ENSSSCT00040020504.1	UniProtKB/TrEMBL
	ENSSSCT00040020518.1	UniProtKB/TrEMBL
	ENSSSCT00040020525.1	UniProtKB/TrEMBL
	ENSSSCT00040020540.1	UniProtKB/TrEMBL
	ENSSSCT00040020559.1	UniProtKB/TrEMBL
	ENSSSCT00040020571.1	UniProtKB/TrEMBL
	ENSSSCT00040020580.1	UniProtKB/TrEMBL
	ENSSSCT00045054999.1	UniProtKB/TrEMBL
	ENSSSCT00045055104.1	UniProtKB/TrEMBL
	ENSSSCT00045055224.1	UniProtKB/TrEMBL
	ENSSSCT00045055304.1	UniProtKB/TrEMBL
	ENSSSCT00045055432.1	UniProtKB/TrEMBL
	ENSSSCT00045055538.1	UniProtKB/TrEMBL
	ENSSSCT00045055627.1	UniProtKB/TrEMBL
	ENSSSCT00050050932.1	UniProtKB/TrEMBL
	ENSSSCT00050050934.1	UniProtKB/TrEMBL
	ENSSSCT00050050938.1	UniProtKB/TrEMBL
	ENSSSCT00050050940.1	UniProtKB/TrEMBL
	ENSSSCT00050050944.1	UniProtKB/TrEMBL
	ENSSSCT00055045172.1	UniProtKB/TrEMBL
	ENSSSCT00055045265.1	UniProtKB/TrEMBL
	ENSSSCT00055045361.1	UniProtKB/TrEMBL
	ENSSSCT00055045466.1	UniProtKB/TrEMBL
	ENSSSCT00055045596.1	UniProtKB/TrEMBL
	ENSSSCT00055045693.1	UniProtKB/TrEMBL
	ENSSSCT00055045814.1	UniProtKB/TrEMBL
	ENSSSCT00060008652.1	UniProtKB/TrEMBL
	ENSSSCT00060008672.1	UniProtKB/TrEMBL
	ENSSSCT00065021203.1	UniProtKB/TrEMBL
	ENSSSCT00065021212.1	UniProtKB/TrEMBL
	ENSSSCT00065021216.1	UniProtKB/TrEMBL
	ENSSSCT00065021219.1	UniProtKB/TrEMBL
	ENSSSCT00065021231.1	UniProtKB/TrEMBL
	ENSSSCT00065021237.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1160.20	UniProtKB/TrEMBL
	2.30.29.30	UniProtKB/TrEMBL
InterPro	CCM2_C	UniProtKB/TrEMBL
	Malcavernin	UniProtKB/TrEMBL
	PH-like_dom_sf	UniProtKB/TrEMBL
	PTB/PI_dom	UniProtKB/TrEMBL
KEGG Report	ssc:100511907	UniProtKB/TrEMBL
NCBI Gene	CCM2	ENTREZGENE
PANTHER	CEREBRAL CAVERNOUS MALFORMATIONS 2 PROTEIN	UniProtKB/TrEMBL
	PTHR21642	UniProtKB/TrEMBL
Pfam	CCM2_C	UniProtKB/TrEMBL
PROSITE	PID	UniProtKB/TrEMBL
UniProt	A0A286ZWP0	ENTREZGENE, UniProtKB/TrEMBL
	A0A287ABS0	ENTREZGENE, UniProtKB/TrEMBL
	A0A287ATH5_PIG	UniProtKB/TrEMBL
	A0A287B5L8_PIG	UniProtKB/TrEMBL
	A0A480NT24	ENTREZGENE, UniProtKB/TrEMBL
	A0A480Q6D6	ENTREZGENE, UniProtKB/TrEMBL
	A0A5G2QG76_PIG	UniProtKB/TrEMBL
	A0A8D0WDP7_PIG	UniProtKB/TrEMBL
	A0A8D0WFM7_PIG	UniProtKB/TrEMBL
	A0A8D0WGG2_PIG	UniProtKB/TrEMBL
	A0A8D0WHA9_PIG	UniProtKB/TrEMBL
	A0A8D0WIM5_PIG	UniProtKB/TrEMBL
	A0A8D1AKE8_PIG	UniProtKB/TrEMBL
	A0A8D1AND5_PIG	UniProtKB/TrEMBL
	A0A8D1ASX8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1DLJ9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1DLL1_PIG	UniProtKB/TrEMBL
	A0A8D1DM60_PIG	UniProtKB/TrEMBL
	A0A8D1IUU0_PIG	UniProtKB/TrEMBL
	A0A8D1IVW3_PIG	UniProtKB/TrEMBL
	A0A8D1K3Y5_PIG	UniProtKB/TrEMBL
	A0A8D1L5W0_PIG	UniProtKB/TrEMBL
	A0A8D1MAR1_PIG	UniProtKB/TrEMBL
	A0A8D1MEV8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1RKP5_PIG	UniProtKB/TrEMBL
	A0A8D1XNF7	ENTREZGENE, UniProtKB/TrEMBL
	F1ST61	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:86343	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - PID (archival)

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - PID (archival)