LOC110258087 (endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase-like) - Rat Genome Database

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Gene: LOC110258087 (endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase-like) Sus scrofa
Analyze
Symbol: LOC110258087
Name: endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase-like
RGD ID: 13857760
Description: ENCODES a protein that exhibits alpha-mannosidase activity (inferred); calcium ion binding (inferred); hydrolase activity, acting on glycosyl bonds (inferred); INVOLVED IN ERAD pathway (ortholog); mannoprotein catabolic process (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog); FOUND IN cytoplasmic vesicle (ortholog); endoplasmic reticulum quality control compartment (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position: No map positions available.


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC110258087
(Sus scrofa - pig)		 No map positions available.
MAN1B1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389137,086,985 - 137,109,183 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9137,086,857 - 137,109,189 (+)EnsemblGRCh38hg38GRCh38
GRCh379139,981,437 - 140,003,635 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369139,101,200 - 139,123,460 (+)NCBINCBI36Build 36hg18NCBI36
Build 349137,257,215 - 137,279,476NCBI
Celera9110,494,869 - 110,517,868 (+)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9109,441,072 - 109,464,974 (+)NCBIHuRef
CHM1_19140,130,181 - 140,152,419 (+)NCBICHM1_1
T2T-CHM13v2.09149,322,873 - 149,347,137 (+)NCBIT2T-CHM13v2.0
Man1b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,222,742 - 25,242,225 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl225,222,350 - 25,242,224 (+)EnsemblGRCm39 Ensembl
GRCm38225,332,730 - 25,352,213 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,332,338 - 25,352,212 (+)EnsemblGRCm38mm10GRCm38
MGSCv37225,188,263 - 25,207,733 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36225,154,765 - 25,174,221 (+)NCBIMGSCv36mm8
Celera225,060,285 - 25,079,751 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map217.17NCBI
Man1b1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8328,539,778 - 28,563,155 (+)NCBIGRCr8
mRatBN7.238,143,877 - 8,165,007 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl38,143,381 - 8,165,006 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx311,248,895 - 11,270,140 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0319,835,125 - 19,856,370 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0318,024,968 - 18,046,213 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.032,547,259 - 2,569,051 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,547,986 - 2,569,049 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.032,528,747 - 2,550,463 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.433,493,476 - 3,514,884 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera32,970,480 - 2,991,187 (+)NCBICelera
Cytogenetic Map3p13NCBI
Man1b1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555135,111,046 - 5,122,442 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555135,109,651 - 5,122,568 (-)NCBIChiLan1.0ChiLan1.0
MAN1B1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2112,290,146 - 2,312,954 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan192,292,479 - 2,313,502 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09108,148,020 - 108,168,931 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19137,117,150 - 137,139,066 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9137,118,361 - 137,139,066 (+)Ensemblpanpan1.1panPan2
LOC480667
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1948,533,962 - 48,545,514 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl948,533,962 - 48,545,344 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha947,726,966 - 47,738,670 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0949,401,870 - 49,413,599 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1948,178,182 - 48,189,888 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0948,476,984 - 48,488,658 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0948,524,211 - 48,535,917 (+)NCBIUU_Cfam_GSD_1.0
Man1b1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947202,507,291 - 202,519,741 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936669855,340 - 871,516 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936669855,349 - 867,763 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAN1B1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1121,080,492 - 1,104,981 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl121,080,305 - 1,105,027 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660584,199,294 - 4,223,592 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Man1b1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624760813,045 - 825,153 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624760813,657 - 826,020 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system nervous system
High
Medium
Low
Below cutoff 1 2

Sequence


Protein Sequences
Protein RefSeqs XP_020936907 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000023934.3
  ENSSSCP00000075305.1
  ENSSSCP00000076190.1
  ENSSSCP00000076737
  ENSSSCP00000076737.1
  ENSSSCP00030010665.1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000027526 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00030017185 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000022310.4 UniProtKB/TrEMBL
  ENSSSCT00000091647.1 UniProtKB/TrEMBL
  ENSSSCT00000098701 ENTREZGENE
  ENSSSCT00000098701.1 UniProtKB/TrEMBL
  ENSSSCT00000105283.1 UniProtKB/TrEMBL
  ENSSSCT00030023769.1 UniProtKB/TrEMBL
Gene3D-CATH 1.50.10.10 UniProtKB/TrEMBL
InterPro 6hp_glycosidase-like_sf UniProtKB/TrEMBL
  Glyco_hydro_47 UniProtKB/TrEMBL
  Seven-hairpin_glycosidases UniProtKB/TrEMBL
NCBI Gene LOC110258087 ENTREZGENE
PANTHER ENDOPLASMIC RETICULUM MANNOSYL-OLIGOSACCHARIDE 1,2-ALPHA-MANNOSIDASE UniProtKB/TrEMBL
  MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED UniProtKB/TrEMBL
Pfam Glyco_hydro_47 UniProtKB/TrEMBL
PRINTS GLYHDRLASE47 UniProtKB/TrEMBL
Superfamily-SCOP SSF48225 UniProtKB/TrEMBL
UniProt A0A8D1C1G1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4F904_PIG UniProtKB/TrEMBL
  A0A8W4F9X5_PIG UniProtKB/TrEMBL
  A0A8W4FBU4_PIG UniProtKB/TrEMBL
  I3LIM8_PIG UniProtKB/TrEMBL