ANKS4B (ankyrin repeat and sterile alpha motif domain containing 4B) - Rat Genome Database

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Gene: ANKS4B (ankyrin repeat and sterile alpha motif domain containing 4B) Sus scrofa
Analyze
Symbol: ANKS4B
Name: ankyrin repeat and sterile alpha motif domain containing 4B
RGD ID: 13855937
Description: INVOLVED IN response to endoplasmic reticulum stress (ortholog); FOUND IN brush border (inferred); endoplasmic reticulum membrane (inferred); microvillus (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ankyrin repeat and SAM domain-containing protein 4B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl324,828,224 - 24,852,764 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1324,836,446 - 24,852,816 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2325,642,959 - 25,654,471 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ANKS4B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl324,828,224 - 24,852,764 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1324,836,446 - 24,852,816 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2325,642,959 - 25,654,471 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ANKS4B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381621,233,699 - 21,253,850 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1621,233,699 - 21,253,850 (+)EnsemblGRCh38hg38GRCh38
GRCh371621,245,020 - 21,265,171 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361621,152,517 - 21,171,251 (+)NCBINCBI36Build 36hg18NCBI36
Celera1620,559,328 - 20,578,058 (+)NCBICelera
Cytogenetic Map16p12.2NCBI
HuRef1619,780,267 - 19,798,999 (+)NCBIHuRef
CHM1_11621,332,353 - 21,351,089 (+)NCBICHM1_1
T2T-CHM13v2.01621,168,996 - 21,189,143 (+)NCBIT2T-CHM13v2.0
Anks4b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397119,773,081 - 119,782,939 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7119,773,081 - 119,784,809 (+)EnsemblGRCm39 Ensembl
GRCm387120,173,858 - 120,183,716 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7120,173,858 - 120,185,586 (+)EnsemblGRCm38mm10GRCm38
MGSCv377127,317,372 - 127,327,230 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367119,965,025 - 119,974,863 (+)NCBIMGSCv36mm8
Celera7120,083,279 - 120,093,146 (+)NCBICelera
Cytogenetic Map7F2NCBI
cM Map764.45NCBI
Anks4b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81183,934,528 - 183,989,127 (+)NCBIGRCr8
mRatBN7.21174,534,195 - 174,557,798 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1174,547,473 - 174,557,797 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1182,872,512 - 182,882,615 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01190,058,556 - 190,068,657 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01182,784,909 - 182,795,235 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01189,940,305 - 189,942,113 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1189,940,291 - 189,942,112 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01196,869,693 - 196,871,501 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1172,297,007 - 172,306,740 (+)NCBICelera
Cytogenetic Map1q36NCBI
Anks4b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955493428,895 - 440,379 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955493429,339 - 439,456 (+)NCBIChiLan1.0ChiLan1.0
ANKS4B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21822,406,254 - 22,421,664 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11626,926,784 - 26,942,201 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01617,154,209 - 17,170,120 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11621,267,573 - 21,283,015 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1621,267,573 - 21,283,015 (+)Ensemblpanpan1.1panPan2
ANKS4B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1624,209,125 - 24,230,355 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl624,209,125 - 24,267,993 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha625,646,863 - 25,683,978 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0624,360,462 - 24,397,584 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl624,358,101 - 24,419,328 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1624,163,860 - 24,200,973 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0624,057,504 - 24,094,624 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0624,442,579 - 24,480,050 (-)NCBIUU_Cfam_GSD_1.0
Anks4b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344118,325,830 - 118,339,050 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365016,423,719 - 6,435,835 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365016,423,719 - 6,436,639 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKS4B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1519,347,736 - 19,380,959 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl519,358,962 - 19,380,332 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606810,500,124 - 10,521,156 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Anks4b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247827,289,623 - 7,315,717 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247827,287,514 - 7,316,577 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ANKS4B
399 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
ectoderm
endocrine system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
8 9 1 7 1 9 3 3

Sequence


Ensembl Acc Id: ENSSSCT00000008600   ⟹   ENSSSCP00000008379
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl324,828,224 - 24,852,764 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000093602   ⟹   ENSSSCP00000075292
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl324,841,301 - 24,847,067 (-)Ensembl
RefSeq Acc Id: XM_003124558   ⟹   XP_003124606
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1324,836,446 - 24,852,816 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003124606   ⟸   XM_003124558
- UniProtKB: F1RPC7 (UniProtKB/TrEMBL),   A0A8D1ZFU2 (UniProtKB/TrEMBL),   A0A8D0M783 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000008379   ⟸   ENSSSCT00000008600
Ensembl Acc Id: ENSSSCP00000075292   ⟸   ENSSSCT00000093602
Protein Domains
SAM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000007850 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005045150 UniProtKB/TrEMBL
  ENSSSCG00030021417 UniProtKB/TrEMBL
  ENSSSCG00035039509 UniProtKB/TrEMBL
  ENSSSCG00040039708 UniProtKB/TrEMBL
  ENSSSCG00045025865 UniProtKB/TrEMBL
  ENSSSCG00050055606 UniProtKB/TrEMBL
  ENSSSCG00065058683 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000008600 ENTREZGENE
  ENSSSCT00000008600.4 UniProtKB/TrEMBL
  ENSSSCT00000093602.1 UniProtKB/TrEMBL
  ENSSSCT00005072877.1 UniProtKB/TrEMBL
  ENSSSCT00030029709.1 UniProtKB/TrEMBL
  ENSSSCT00035052476.1 UniProtKB/TrEMBL
  ENSSSCT00040053115.1 UniProtKB/TrEMBL
  ENSSSCT00045044051.1 UniProtKB/TrEMBL
  ENSSSCT00050075869.1 UniProtKB/TrEMBL
  ENSSSCT00065080296.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/TrEMBL
InterPro ANKS4B_SAM UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL
KEGG Report ssc:100525512 UniProtKB/TrEMBL
NCBI Gene ANKS4B ENTREZGENE
PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED UniProtKB/TrEMBL
  ANKYRIN REPEAT AND SAM DOMAIN-CONTAINING PROTEIN 4B UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  SAM_1 UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/TrEMBL
  SSF48403 UniProtKB/TrEMBL
UniProt A0A8D0M783 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1ZFU2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FAG9_PIG UniProtKB/TrEMBL
  F1RPC7 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:85350 ENTREZGENE