MCIDAS (multiciliate differentiation and DNA synthesis associated cell cycle protein) - Rat Genome Database

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Gene: MCIDAS (multiciliate differentiation and DNA synthesis associated cell cycle protein) Sus scrofa
Analyze
Symbol: MCIDAS
Name: multiciliate differentiation and DNA synthesis associated cell cycle protein
RGD ID: 13855468
Description: ENCODES a protein that exhibits identical protein binding (inferred); INVOLVED IN centriole assembly (ortholog); cilium assembly (ortholog); motile cilium assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); primary ciliary dyskinesia (ortholog); FOUND IN nucleolus (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: IDAS; MCI; MCIN; multicilin; Protein Idas
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1634,376,959 - 34,384,453 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11634,377,130 - 34,386,095 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21636,422,904 - 36,425,070 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nuclear body  (IEA)
nucleolus  (ISO)
nucleus  (IBA,IEA,ISS)

Molecular Function

References
Additional References at PubMed
PMID:14681463  


Genomics

Comparative Map Data
MCIDAS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1634,376,959 - 34,384,453 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11634,377,130 - 34,386,095 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21636,422,904 - 36,425,070 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MCIDAS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38555,219,564 - 55,227,315 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl555,219,564 - 55,227,315 (-)EnsemblGRCh38hg38GRCh38
GRCh37554,515,392 - 54,523,143 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36554,551,411 - 54,559,720 (-)NCBINCBI36Build 36hg18NCBI36
Celera551,468,215 - 51,475,934 (-)NCBICelera
Cytogenetic Map5q11.2NCBI
HuRef551,488,443 - 51,496,162 (-)NCBIHuRef
CHM1_1554,519,283 - 54,527,002 (-)NCBICHM1_1
T2T-CHM13v2.0556,046,854 - 56,054,605 (-)NCBIT2T-CHM13v2.0
Mcidas
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913113,130,104 - 113,138,233 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13113,130,379 - 113,136,928 (+)EnsemblGRCm39 Ensembl
GRCm3813112,993,581 - 113,000,394 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13112,993,845 - 113,000,394 (+)EnsemblGRCm38mm10GRCm38
MGSCv3713113,784,076 - 113,790,602 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613114,114,746 - 114,121,272 (+)NCBIMGSCv36mm8
Celera13117,311,043 - 117,317,582 (+)NCBICelera
Cytogenetic Map13D2.2NCBI
cM Map1363.93NCBI
Mcidas
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2244,636,820 - 44,644,551 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl244,636,856 - 44,642,601 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0244,863,246 - 44,869,732 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl244,863,252 - 44,870,536 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0263,902,057 - 63,908,469 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4244,384,186 - 44,390,539 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera240,410,207 - 40,417,348 (+)NCBICelera
Cytogenetic Map2q14NCBI
Mcidas
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544612,438,737 - 12,445,254 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544612,438,737 - 12,445,254 (+)NCBIChiLan1.0ChiLan1.0
MCIDAS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1556,867,103 - 56,875,521 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0558,802,664 - 58,811,075 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1560,425,341 - 60,433,035 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl560,425,341 - 60,433,035 (+)Ensemblpanpan1.1panPan2
MCIDAS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1242,577,028 - 42,583,120 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl242,577,039 - 42,583,011 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha239,620,953 - 39,628,779 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0243,038,903 - 43,046,722 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl243,040,133 - 43,046,722 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1240,117,516 - 40,125,325 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0240,919,280 - 40,927,087 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0241,742,233 - 41,750,038 (-)NCBIUU_Cfam_GSD_1.0
Mcidas
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213203,597,126 - 203,603,667 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648012,533,713 - 12,539,387 (+)EnsemblSpeTri2.0
SpeTri2.0NW_00493648012,533,604 - 12,539,639 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MCIDAS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1451,454,155 - 51,464,823 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl451,455,506 - 51,462,302 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666049322,285 - 331,786 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mcidas
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247594,038,732 - 4,045,351 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247594,038,668 - 4,045,607 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MCIDAS
225 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system reproductive system
High
Medium
Low 1
Below cutoff 1 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000052937   ⟹   ENSSSCP00000033119
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1634,376,959 - 34,384,453 (-)Ensembl
RefSeq Acc Id: XM_021077052   ⟹   XP_020932711
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11634,377,130 - 34,386,095 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020932711 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein F1SLM8 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_020932711   ⟸   XM_021077052
- UniProtKB: F1SLM8 (UniProtKB/Swiss-Prot),   A0A8D1CHR4 (UniProtKB/TrEMBL),   A0A8D1EG76 (UniProtKB/TrEMBL),   A0A8D1GPR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000033119   ⟸   ENSSSCT00000052937


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000036183 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSSSCG00030071179 UniProtKB/TrEMBL
  ENSSSCG00040036515 UniProtKB/TrEMBL
  ENSSSCG00045006630 UniProtKB/TrEMBL
  ENSSSCG00050062486 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000033119 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSSSCP00030045856.1 UniProtKB/TrEMBL
  ENSSSCP00040020367.1 UniProtKB/TrEMBL
  ENSSSCP00045007530.1 UniProtKB/TrEMBL
  ENSSSCP00050036558.1 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000052937 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSSSCT00030099571.1 UniProtKB/TrEMBL
  ENSSSCT00040048928.1 UniProtKB/TrEMBL
  ENSSSCT00045011036.1 UniProtKB/TrEMBL
  ENSSSCT00050085120.1 UniProtKB/TrEMBL
Gene3D-CATH Geminin coiled-coil domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Geminin/Multicilin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene MCIDAS ENTREZGENE
PANTHER GEMININ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MULTICILIN UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
Pfam Geminin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Geminin coiled-coil domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8D1CHR4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1EG76 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1GPR9 ENTREZGENE, UniProtKB/TrEMBL
  F1SLM8 ENTREZGENE, UniProtKB/Swiss-Prot
VGNC ID VGNC:90071 ENTREZGENE