ANXA13 (annexin A13) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: ANXA13 (annexin A13) Sus scrofa
Analyze
Symbol: ANXA13
Name: annexin A13
RGD ID: 13855370
Description: ENCODES a protein that exhibits phosphatidylcholine binding (ortholog); INVOLVED IN negative regulation of Golgi to plasma membrane protein transport (ortholog); positive regulation of Golgi to plasma membrane protein transport (ortholog); ASSOCIATED WITH trichorhinophalangeal syndrome type I (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); exocytic vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl415,707,607 - 15,766,629 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1415,707,576 - 15,765,934 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2416,450,337 - 16,486,055 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463  


Genomics

Comparative Map Data
ANXA13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl415,707,607 - 15,766,629 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1415,707,576 - 15,765,934 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2416,450,337 - 16,486,055 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ANXA13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl8123,680,794 - 123,737,402 (-)EnsemblGRCh38hg38GRCh38
GRCh388123,680,794 - 123,737,393 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh378124,693,034 - 124,749,633 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368124,762,215 - 124,818,828 (-)NCBINCBI36hg18NCBI36
Build 348124,762,215 - 124,818,828NCBI
Celera8120,881,263 - 120,937,857 (-)NCBI
Cytogenetic Map8q24.13NCBI
HuRef8120,019,544 - 120,076,140 (-)NCBIHuRef
CHM1_18124,733,266 - 124,789,887 (-)NCBICHM1_1
Anxa13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391558,204,860 - 58,261,123 (-)NCBIGRCm39mm39
GRCm39 Ensembl1558,204,867 - 58,261,093 (-)Ensembl
GRCm381558,341,464 - 58,389,274 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1558,341,363 - 58,389,383 (-)EnsemblGRCm38mm10GRCm38
MGSCv371558,173,019 - 58,220,829 (-)NCBIGRCm37mm9NCBIm37
MGSCv361558,171,547 - 58,219,357 (-)NCBImm8
Celera1559,861,628 - 59,917,546 (-)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1524.66NCBI
Anxa13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2789,884,356 - 89,936,907 (-)NCBI
Rnor_6.0 Ensembl798,217,642 - 98,270,110 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0798,217,642 - 98,270,442 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0798,819,726 - 98,871,641 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4795,071,045 - 95,123,201 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1795,105,531 - 95,159,085 (-)NCBI
Celera786,653,899 - 86,706,292 (-)NCBICelera
Cytogenetic Map7q33NCBI
Anxa13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555402,481,199 - 2,533,976 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555402,482,499 - 2,561,569 (-)NCBIChiLan1.0ChiLan1.0
ANXA13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.18123,131,305 - 123,167,399 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8123,131,751 - 123,187,952 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v08120,376,019 - 120,423,509 (-)NCBIMhudiblu_PPA_v0panPan3
ANXA13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11321,960,439 - 22,010,660 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1321,960,439 - 22,010,604 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1321,926,198 - 21,976,304 (-)NCBI
ROS_Cfam_1.01322,302,080 - 22,352,294 (-)NCBI
UMICH_Zoey_3.11322,028,888 - 22,078,969 (-)NCBI
UNSW_CanFamBas_1.01322,132,767 - 22,182,895 (-)NCBI
UU_Cfam_GSD_1.01322,374,817 - 22,424,925 (-)NCBI
Anxa13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530316,284,490 - 16,337,172 (+)NCBI
SpeTri2.0NW_00493647023,710,710 - 23,763,183 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANXA13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18118,253,674 - 118,312,668 (-)NCBI
ChlSab1.1 Ensembl8118,253,506 - 118,311,947 (-)Ensembl
Vero_WHO_p1.0NW_02366603921,898,946 - 21,958,140 (+)NCBI
Anxa13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473531,296,279 - 31,342,220 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system
High
Medium 5 1
Low 3 2 13 1 1
Below cutoff 2 2 3 1 2 10 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000006562   ⟹   ENSSSCP00000006387
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl415,707,607 - 15,766,629 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000061476   ⟹   ENSSSCP00000037349
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl415,708,753 - 15,765,931 (+)Ensembl
RefSeq Acc Id: XM_013996500   ⟹   XP_013851954
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1415,707,576 - 15,765,934 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088956   ⟹   XP_020944615
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1415,707,601 - 15,765,934 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088957   ⟹   XP_020944616
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1415,707,601 - 15,765,934 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013851954 (Get FASTA)   NCBI Sequence Viewer  
  XP_020944615 (Get FASTA)   NCBI Sequence Viewer  
  XP_020944616 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013851954   ⟸   XM_013996500
- Peptide Label: isoform X3
- UniProtKB: F1RRP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020944615   ⟸   XM_021088956
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020944616   ⟸   XM_021088957
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000006387   ⟸   ENSSSCT00000006562
RefSeq Acc Id: ENSSSCP00000037349   ⟸   ENSSSCT00000061476


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000005979 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070005741 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000006387 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000037349 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070009046 UniProtKB/TrEMBL
  ENSSSCP00070009058 UniProtKB/TrEMBL
  ENSSSCP00070009063 UniProtKB/TrEMBL
  ENSSSCP00070009068 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000006562 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000061476 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070010984 UniProtKB/TrEMBL
  ENSSSCT00070010997 UniProtKB/TrEMBL
  ENSSSCT00070011005 UniProtKB/TrEMBL
  ENSSSCT00070011011 UniProtKB/TrEMBL
Gene3D-CATH 1.10.220.10 UniProtKB/TrEMBL
InterPro Annexin UniProtKB/TrEMBL
  Annexin_repeat UniProtKB/TrEMBL
  Annexin_repeat_CS UniProtKB/TrEMBL
  Annexin_sf UniProtKB/TrEMBL
  ANX13 UniProtKB/TrEMBL
KEGG Report ssc:100155380 UniProtKB/TrEMBL
NCBI Gene ANXA13 ENTREZGENE
Pfam Annexin UniProtKB/TrEMBL
PRINTS ANNEXIN UniProtKB/TrEMBL
  ANNEXINXIII UniProtKB/TrEMBL
PROSITE ANNEXIN UniProtKB/TrEMBL
  ANNEXIN_2 UniProtKB/TrEMBL
SMART ANX UniProtKB/TrEMBL
Superfamily-SCOP SSF47874 UniProtKB/TrEMBL
UniProt A0A287A080_PIG UniProtKB/TrEMBL
  A0A4X1T237_PIG UniProtKB/TrEMBL
  A0A4X1T259_PIG UniProtKB/TrEMBL
  A0A4X1T2W6_PIG UniProtKB/TrEMBL
  A0A4X1T2X1_PIG UniProtKB/TrEMBL
  F1RRP6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:85368 ENTREZGENE