NTNG1 (netrin G1) - Rat Genome Database

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Gene: NTNG1 (netrin G1) Sus scrofa
Analyze
Symbol: NTNG1
Name: netrin G1
RGD ID: 13855331
Description: ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); INVOLVED IN axonogenesis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); bipolar disorder (ortholog); Colorectal Neoplasms (ortholog); FOUND IN anchored component of plasma membrane (ortholog); anchored component of presynaptic active zone membrane (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: netrin-G1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4112,287,043 - 112,614,544 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14112,280,899 - 112,615,782 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24123,051,572 - 123,403,728 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
NTNG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4112,287,043 - 112,614,544 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14112,280,899 - 112,615,782 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24123,051,572 - 123,403,728 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NTNG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1107,140,007 - 107,484,923 (+)EnsemblGRCh38hg38GRCh38
GRCh381107,140,017 - 107,484,923 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371107,682,710 - 108,027,545 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361107,484,268 - 107,825,998 (+)NCBINCBI36hg18NCBI36
Build 341107,394,786 - 107,736,517NCBI
Celera1105,857,329 - 106,199,221 (+)NCBI
Cytogenetic Map1p13.3NCBI
HuRef1105,628,484 - 105,970,399 (+)NCBIHuRef
CHM1_11107,797,518 - 108,139,409 (+)NCBICHM1_1
Ntng1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393109,687,366 - 110,057,291 (-)NCBIGRCm39mm39
GRCm39 Ensembl3109,687,356 - 110,051,327 (-)Ensembl
GRCm383109,780,050 - 110,149,972 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3109,780,040 - 110,144,011 (-)EnsemblGRCm38mm10GRCm38
MGSCv373109,582,968 - 109,946,390 (-)NCBIGRCm37mm9NCBIm37
MGSCv363109,909,161 - 110,271,285 (-)NCBImm8
Celera3112,112,977 - 112,463,175 (-)NCBICelera
Cytogenetic Map3F3NCBI
Ntng1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22197,462,785 - 197,827,681 (-)NCBI
Rnor_6.0 Ensembl2212,696,624 - 212,852,870 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02212,695,464 - 213,073,046 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02232,164,771 - 232,540,890 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42205,438,061 - 205,806,249 (-)NCBIRGSC3.4rn4RGSC3.4
Celera2190,099,849 - 190,462,194 (-)NCBICelera
Cytogenetic Map2q41NCBI
Ntng1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543510,923,490 - 11,248,995 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543510,923,557 - 11,247,091 (+)NCBIChiLan1.0ChiLan1.0
NTNG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11108,782,831 - 109,131,065 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1108,790,654 - 109,127,016 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01109,666,955 - 110,012,880 (+)NCBIMhudiblu_PPA_v0panPan3
NTNG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1644,091,368 - 44,407,118 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl644,092,043 - 44,403,799 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha646,876,321 - 47,191,139 (-)NCBI
ROS_Cfam_1.0644,370,414 - 44,691,951 (-)NCBI
UMICH_Zoey_3.1644,103,380 - 44,424,632 (-)NCBI
UNSW_CanFamBas_1.0644,072,563 - 44,386,000 (-)NCBI
UU_Cfam_GSD_1.0644,504,683 - 44,821,791 (-)NCBI
Ntng1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058116,385,588 - 116,732,725 (+)NCBI
SpeTri2.0NW_004936731844,718 - 1,184,179 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NTNG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12026,110,472 - 26,453,603 (-)NCBI
ChlSab1.1 Ensembl2026,112,017 - 26,275,352 (-)Ensembl
Vero_WHO_p1.0NW_02366603831,777,192 - 32,133,461 (+)NCBI
Ntng1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247723,164,503 - 3,493,574 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system nervous system renal system reproductive system respiratory system
High
Medium 2
Low 2 3 1 21 2 1
Below cutoff 8 2 3 2 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000007505   ⟹   ENSSSCP00000007307
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4112,287,043 - 112,613,454 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000022367   ⟹   ENSSSCP00000027743
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4112,287,364 - 112,613,441 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000033143   ⟹   ENSSSCP00000046063
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4112,287,586 - 112,613,455 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000035789   ⟹   ENSSSCP00000037296
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4112,287,364 - 112,614,544 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000037350   ⟹   ENSSSCP00000055775
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4112,287,567 - 112,614,245 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000044036   ⟹   ENSSSCP00000057481
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4112,287,586 - 112,613,455 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000044183   ⟹   ENSSSCP00000042907
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4112,288,591 - 112,614,544 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000060764   ⟹   ENSSSCP00000042006
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4112,287,364 - 112,613,443 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000062276   ⟹   ENSSSCP00000056175
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4112,287,567 - 112,614,245 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000064513   ⟹   ENSSSCP00000055068
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4112,287,582 - 112,614,503 (-)Ensembl
RefSeq Acc Id: XM_021090111   ⟹   XP_020945770
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14112,280,899 - 112,614,443 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090112   ⟹   XP_020945771
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14112,280,899 - 112,613,305 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090113   ⟹   XP_020945772
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14112,280,899 - 112,612,573 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090114   ⟹   XP_020945773
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14112,280,899 - 112,615,782 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090115   ⟹   XP_020945774
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14112,280,899 - 112,614,442 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090116   ⟹   XP_020945775
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14112,280,899 - 112,614,440 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090117   ⟹   XP_020945776
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14112,280,899 - 112,612,567 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090118   ⟹   XP_020945777
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14112,280,899 - 112,614,440 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090119   ⟹   XP_020945778
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14112,280,899 - 112,614,438 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090120   ⟹   XP_020945779
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14112,335,487 - 112,614,440 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_020945773   ⟸   XM_021090114
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020945770   ⟸   XM_021090111
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020945774   ⟸   XM_021090115
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020945777   ⟸   XM_021090118
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020945775   ⟸   XM_021090116
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020945778   ⟸   XM_021090119
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020945771   ⟸   XM_021090112
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020945772   ⟸   XM_021090113
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020945776   ⟸   XM_021090117
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020945779   ⟸   XM_021090120
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSSSCP00000055068   ⟸   ENSSSCT00000064513
RefSeq Acc Id: ENSSSCP00000057481   ⟸   ENSSSCT00000044036
RefSeq Acc Id: ENSSSCP00000042907   ⟸   ENSSSCT00000044183
RefSeq Acc Id: ENSSSCP00000042006   ⟸   ENSSSCT00000060764
RefSeq Acc Id: ENSSSCP00000037296   ⟸   ENSSSCT00000035789
RefSeq Acc Id: ENSSSCP00000056175   ⟸   ENSSSCT00000062276
RefSeq Acc Id: ENSSSCP00000055775   ⟸   ENSSSCT00000037350
RefSeq Acc Id: ENSSSCP00000027743   ⟸   ENSSSCT00000022367
RefSeq Acc Id: ENSSSCP00000007307   ⟸   ENSSSCT00000007505
RefSeq Acc Id: ENSSSCP00000046063   ⟸   ENSSSCT00000033143

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006852 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070009941 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000007307 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000027743 UniProtKB/TrEMBL
  ENSSSCP00000037296 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000042006 UniProtKB/TrEMBL
  ENSSSCP00000042907 UniProtKB/TrEMBL
  ENSSSCP00000046063 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000055068 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000055775 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000056175 UniProtKB/TrEMBL
  ENSSSCP00000057481 UniProtKB/TrEMBL
  ENSSSCP00070016135 UniProtKB/TrEMBL
  ENSSSCP00070016144 UniProtKB/TrEMBL
  ENSSSCP00070016148 UniProtKB/TrEMBL
  ENSSSCP00070016165 UniProtKB/TrEMBL
  ENSSSCP00070016168 UniProtKB/TrEMBL
  ENSSSCP00070016187 UniProtKB/TrEMBL
  ENSSSCP00070016190 UniProtKB/TrEMBL
  ENSSSCP00070016200 UniProtKB/TrEMBL
  ENSSSCP00070016202 UniProtKB/TrEMBL
  ENSSSCP00070016204 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000007505 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000022367 UniProtKB/TrEMBL
  ENSSSCT00000033143 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000035789 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000037350 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000044036 UniProtKB/TrEMBL
  ENSSSCT00000044183 UniProtKB/TrEMBL
  ENSSSCT00000060764 UniProtKB/TrEMBL
  ENSSSCT00000062276 UniProtKB/TrEMBL
  ENSSSCT00000064513 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070019391 UniProtKB/TrEMBL
  ENSSSCT00070019400 UniProtKB/TrEMBL
  ENSSSCT00070019404 UniProtKB/TrEMBL
  ENSSSCT00070019429 UniProtKB/TrEMBL
  ENSSSCT00070019432 UniProtKB/TrEMBL
  ENSSSCT00070019453 UniProtKB/TrEMBL
  ENSSSCT00070019457 UniProtKB/TrEMBL
  ENSSSCT00070019469 UniProtKB/TrEMBL
  ENSSSCT00070019472 UniProtKB/TrEMBL
  ENSSSCT00070019479 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.1490 UniProtKB/TrEMBL
InterPro EGF-like_dom UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/TrEMBL
  Laminin_N UniProtKB/TrEMBL
  Laminin_N_sf UniProtKB/TrEMBL
NCBI Gene NTNG1 ENTREZGENE
Pfam Laminin_EGF UniProtKB/TrEMBL
  Laminin_N UniProtKB/TrEMBL
PROSITE EGF_1 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_LAM_1 UniProtKB/TrEMBL
  EGF_LAM_2 UniProtKB/TrEMBL
  LAMININ_NTER UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_Lam UniProtKB/TrEMBL
  LamNT UniProtKB/TrEMBL
UniProt A0A287A074_PIG UniProtKB/TrEMBL
  A0A287ADX0_PIG UniProtKB/TrEMBL
  A0A287AGD8_PIG UniProtKB/TrEMBL
  A0A287AQA8_PIG UniProtKB/TrEMBL
  A0A287BG12_PIG UniProtKB/TrEMBL
  A0A287BHD9_PIG UniProtKB/TrEMBL
  A0A287BHV1_PIG UniProtKB/TrEMBL
  A0A287BN23_PIG UniProtKB/TrEMBL
  A0A4X1THM2_PIG UniProtKB/TrEMBL
  A0A4X1THQ5_PIG UniProtKB/TrEMBL
  A0A4X1TJE5_PIG UniProtKB/TrEMBL
  A0A4X1TJJ5_PIG UniProtKB/TrEMBL
  A0A4X1TLX3_PIG UniProtKB/TrEMBL
  A0A4X1TLY0_PIG UniProtKB/TrEMBL
  A0A4X1TM11_PIG UniProtKB/TrEMBL
  A0A4X1TM12_PIG UniProtKB/TrEMBL
  A0A4X1TM61_PIG UniProtKB/TrEMBL
  F1S575_PIG UniProtKB/TrEMBL
  I3LUE4_PIG UniProtKB/TrEMBL
VGNC ID VGNC:90935 ENTREZGENE