LOC100153325 (interferon alpha-2) - Rat Genome Database

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Gene: LOC100153325 (interferon alpha-2) Sus scrofa
Analyze
No known orthologs.
Symbol: LOC100153325 (Ensembl: IFN-ALPHA-10)
Name: interferon alpha-2 (Ensembl:interferon-alpha-10)
RGD ID: 13854873
Description: ENCODES a protein that exhibits cytokine activity (inferred); cytokine receptor binding (inferred); INVOLVED IN defense response (inferred); defense response to virus (inferred); signal transduction (inferred); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: IFN-alpha-2; IFN-alpha-3; interferon-alpha-3
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1201,272,569 - 201,273,114 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11201,272,569 - 201,273,114 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21224,467,646 - 224,468,191 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:16901658   PMID:20406849   PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC100153325
5 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000096137   ⟹   ENSSSCP00000080760
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1201,272,569 - 201,273,114 (-)Ensembl
RefSeq Acc Id: NM_001130219   ⟹   NP_001123691
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11201,272,569 - 201,273,114 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001123691   ⟸   NM_001130219
- Peptide Label: precursor
- UniProtKB: Q304W0 (UniProtKB/TrEMBL),   A0A4X1WC40 (UniProtKB/TrEMBL),   A0A8D0RWS9 (UniProtKB/TrEMBL),   A0A8D0S5B6 (UniProtKB/TrEMBL),   Q0GC51 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000080760   ⟸   ENSSSCT00000096137


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000063314 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015049645 UniProtKB/TrEMBL
  ENSSSCG00015050493 UniProtKB/TrEMBL
  ENSSSCG00025039706 UniProtKB/TrEMBL
  ENSSSCG00025040310 UniProtKB/TrEMBL
  ENSSSCG00055008034 UniProtKB/TrEMBL
  ENSSSCG00070030367 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000096137 ENTREZGENE
  ENSSSCT00000096137.1 UniProtKB/TrEMBL
  ENSSSCT00015066916.1 UniProtKB/TrEMBL
  ENSSSCT00015068128.1 UniProtKB/TrEMBL
  ENSSSCT00025053990.1 UniProtKB/TrEMBL
  ENSSSCT00025054822.1 UniProtKB/TrEMBL
  ENSSSCT00055015667.1 UniProtKB/TrEMBL
  ENSSSCT00070061106.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.10 UniProtKB/TrEMBL
InterPro 4_helix_cytokine-like_core UniProtKB/TrEMBL
  Interferon_alpha/beta/delta UniProtKB/TrEMBL
KEGG Report ssc:100153325 UniProtKB/TrEMBL
NCBI Gene LOC100153325 ENTREZGENE
PANTHER INTERFERON ALPHA-5 UniProtKB/TrEMBL
  PTHR11691 UniProtKB/TrEMBL
Pfam Interferon UniProtKB/TrEMBL
PRINTS INTERFERONAB UniProtKB/TrEMBL
PROSITE INTERFERON_A_B_D UniProtKB/TrEMBL
SMART IFabd UniProtKB/TrEMBL
Superfamily-SCOP SSF47266 UniProtKB/TrEMBL
UniProt A0A4X1WC40 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0RWS9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0S5B6 ENTREZGENE, UniProtKB/TrEMBL
  Q0GC51 ENTREZGENE, UniProtKB/TrEMBL
  Q304W0 ENTREZGENE, UniProtKB/TrEMBL