DUT (deoxyuridine triphosphatase) - Rat Genome Database

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Gene: DUT (deoxyuridine triphosphatase) Sus scrofa
Analyze
Symbol: DUT
Name: deoxyuridine triphosphatase
RGD ID: 13854610
Description: ENCODES a protein that exhibits dUTP diphosphatase activity (ortholog); identical protein binding (ortholog); peroxisome proliferator activated receptor binding (ortholog); INVOLVED IN dTMP biosynthetic process (ortholog); dUMP biosynthetic process (ortholog); dUTP catabolic process (ortholog); PARTICIPATES IN beta-ureidopropionase deficiency pathway; dihydropyrimidinase deficiency pathway; mitochondrial neurogastrointestinal encephalopathy syndrome pathway; ASSOCIATED WITH Bloom syndrome (ortholog); Bone Marrow Failure and Diabetes Mellitus Syndrome (ortholog); Brain Neoplasms (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1123,450,858 - 123,462,245 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11123,451,207 - 123,462,267 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21137,480,904 - 137,492,062 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (ISO)
nucleus  (ISO)

References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
DUT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1123,450,858 - 123,462,245 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11123,451,207 - 123,462,267 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21137,480,904 - 137,492,062 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DUT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381548,331,095 - 48,343,373 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1548,331,011 - 48,343,373 (+)EnsemblGRCh38hg38GRCh38
GRCh371548,623,292 - 48,635,570 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361546,410,913 - 46,422,862 (+)NCBINCBI36Build 36hg18NCBI36
Build 341546,411,721 - 46,422,855NCBI
Celera1525,516,088 - 25,528,037 (+)NCBICelera
Cytogenetic Map15q21.1NCBI
HuRef1525,456,621 - 25,468,570 (+)NCBIHuRef
CHM1_11548,741,653 - 48,753,602 (+)NCBICHM1_1
T2T-CHM13v2.01546,139,356 - 46,151,634 (+)NCBIT2T-CHM13v2.0
Dut
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392125,089,168 - 125,100,969 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2125,089,110 - 125,100,528 (+)EnsemblGRCm39 Ensembl
GRCm382125,247,248 - 125,259,049 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2125,247,190 - 125,258,608 (+)EnsemblGRCm38mm10GRCm38
MGSCv372125,072,984 - 125,084,785 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362124,938,923 - 124,950,049 (+)NCBIMGSCv36mm8
Celera2126,491,099 - 126,502,875 (+)NCBICelera
Cytogenetic Map2F1NCBI
cM Map261.33NCBI
Dut
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83132,952,258 - 132,963,433 (+)NCBIGRCr8
mRatBN7.23112,498,864 - 112,509,994 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3112,498,982 - 112,510,771 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3116,358,986 - 116,369,833 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03124,954,504 - 124,965,351 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03122,614,871 - 122,625,718 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03117,514,399 - 117,525,450 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3117,514,444 - 117,525,446 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03124,038,120 - 124,049,168 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43112,551,434 - 112,562,434 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13112,457,006 - 112,468,009 (+)NCBI
Celera3111,355,479 - 111,366,436 (+)NCBICelera
Cytogenetic Map3q36NCBI
Dut
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554095,574,694 - 5,584,134 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554095,574,810 - 5,584,135 (-)NCBIChiLan1.0ChiLan1.0
DUT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21637,571,636 - 37,582,801 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11541,753,022 - 41,764,193 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01527,280,025 - 27,292,003 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11545,604,061 - 45,616,022 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1545,603,807 - 45,616,022 (+)Ensemblpanpan1.1panPan2
DUT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13014,572,766 - 14,585,621 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3014,572,602 - 14,585,530 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3014,494,200 - 14,507,265 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03014,706,670 - 14,719,522 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3014,706,505 - 14,719,499 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13014,629,328 - 14,642,402 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03014,744,651 - 14,757,504 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03014,856,699 - 14,869,776 (+)NCBIUU_Cfam_GSD_1.0
Dut
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864092,822,523 - 92,833,400 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647110,670,604 - 10,681,356 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DUT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12634,941,775 - 34,954,184 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2634,940,702 - 34,953,166 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048106,175,656 - 106,187,091 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dut
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473111,378,944 - 11,388,057 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473111,378,882 - 11,388,677 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in DUT
257 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 2 5 2 1
Low 8 2 3 2 23 3 2
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000040068   ⟹   ENSSSCP00000036706
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1123,451,215 - 123,461,901 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000063339   ⟹   ENSSSCP00000048425
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1123,450,858 - 123,462,245 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000086993   ⟹   ENSSSCP00000066520
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1123,452,369 - 123,462,232 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000087219   ⟹   ENSSSCP00000068990
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1123,452,426 - 123,461,153 (-)Ensembl
RefSeq Acc Id: XM_003353370   ⟹   XP_003353418
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11123,451,207 - 123,461,831 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003353371   ⟹   XP_003353419
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11123,451,207 - 123,462,267 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003353419   ⟸   XM_003353371
- Peptide Label: isoform X2
- UniProtKB: A0A287AX05 (UniProtKB/TrEMBL),   A0A480SPY9 (UniProtKB/TrEMBL),   A0A4X1SHJ9 (UniProtKB/TrEMBL),   A0A8D0VKQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003353418   ⟸   XM_003353370
- Peptide Label: isoform X1
- UniProtKB: A0A480PG39 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000036706   ⟸   ENSSSCT00000040068
RefSeq Acc Id: ENSSSCP00000068990   ⟸   ENSSSCT00000087219
RefSeq Acc Id: ENSSSCP00000048425   ⟸   ENSSSCT00000063339
RefSeq Acc Id: ENSSSCP00000066520   ⟸   ENSSSCT00000086993
Protein Domains
dUTPase-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000032141 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005044321 UniProtKB/TrEMBL
  ENSSSCG00015069232 UniProtKB/TrEMBL
  ENSSSCG00025076537 UniProtKB/TrEMBL
  ENSSSCG00030012036 UniProtKB/TrEMBL
  ENSSSCG00035057840 UniProtKB/TrEMBL
  ENSSSCG00040047879 UniProtKB/TrEMBL
  ENSSSCG00045017439 UniProtKB/TrEMBL
  ENSSSCG00050046738 UniProtKB/TrEMBL
  ENSSSCG00055026755 UniProtKB/TrEMBL
  ENSSSCG00060003144 UniProtKB/TrEMBL
  ENSSSCG00065074069 UniProtKB/TrEMBL
  ENSSSCG00070001122 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000040068 ENTREZGENE
  ENSSSCT00000040068.3 UniProtKB/TrEMBL
  ENSSSCT00000063339 ENTREZGENE
  ENSSSCT00000063339.3 UniProtKB/TrEMBL
  ENSSSCT00000087219.2 UniProtKB/TrEMBL
  ENSSSCT00005071314.1 UniProtKB/TrEMBL
  ENSSSCT00005071407.1 UniProtKB/TrEMBL
  ENSSSCT00015092863.1 UniProtKB/TrEMBL
  ENSSSCT00015092934.1 UniProtKB/TrEMBL
  ENSSSCT00015093018.1 UniProtKB/TrEMBL
  ENSSSCT00015093089.1 UniProtKB/TrEMBL
  ENSSSCT00025106052.1 UniProtKB/TrEMBL
  ENSSSCT00025106092.1 UniProtKB/TrEMBL
  ENSSSCT00025106105.1 UniProtKB/TrEMBL
  ENSSSCT00025106121.1 UniProtKB/TrEMBL
  ENSSSCT00030016528.1 UniProtKB/TrEMBL
  ENSSSCT00030016540.1 UniProtKB/TrEMBL
  ENSSSCT00030016546.1 UniProtKB/TrEMBL
  ENSSSCT00030016551.1 UniProtKB/TrEMBL
  ENSSSCT00035077386.1 UniProtKB/TrEMBL
  ENSSSCT00035077402.1 UniProtKB/TrEMBL
  ENSSSCT00035077408.1 UniProtKB/TrEMBL
  ENSSSCT00035077418.1 UniProtKB/TrEMBL
  ENSSSCT00040064560.1 UniProtKB/TrEMBL
  ENSSSCT00040064648.1 UniProtKB/TrEMBL
  ENSSSCT00040064718.1 UniProtKB/TrEMBL
  ENSSSCT00040064798.1 UniProtKB/TrEMBL
  ENSSSCT00045029721.1 UniProtKB/TrEMBL
  ENSSSCT00045029827.1 UniProtKB/TrEMBL
  ENSSSCT00045029883.1 UniProtKB/TrEMBL
  ENSSSCT00045029950.1 UniProtKB/TrEMBL
  ENSSSCT00050063613.1 UniProtKB/TrEMBL
  ENSSSCT00050063634.1 UniProtKB/TrEMBL
  ENSSSCT00050063638.1 UniProtKB/TrEMBL
  ENSSSCT00050063646.1 UniProtKB/TrEMBL
  ENSSSCT00055052958.1 UniProtKB/TrEMBL
  ENSSSCT00055053053.1 UniProtKB/TrEMBL
  ENSSSCT00055053106.1 UniProtKB/TrEMBL
  ENSSSCT00055053164.1 UniProtKB/TrEMBL
  ENSSSCT00060003879.1 UniProtKB/TrEMBL
  ENSSSCT00060003892.1 UniProtKB/TrEMBL
  ENSSSCT00060003893.1 UniProtKB/TrEMBL
  ENSSSCT00065101998.1 UniProtKB/TrEMBL
  ENSSSCT00065102015.1 UniProtKB/TrEMBL
  ENSSSCT00065102025.1 UniProtKB/TrEMBL
  ENSSSCT00065102054.1 UniProtKB/TrEMBL
  ENSSSCT00070002129.1 UniProtKB/TrEMBL
  ENSSSCT00070002137.1 UniProtKB/TrEMBL
  ENSSSCT00070002155.1 UniProtKB/TrEMBL
Gene3D-CATH 2.70.40.10 UniProtKB/TrEMBL
InterPro dUTPase-like UniProtKB/TrEMBL
  dUTPase-like_sf UniProtKB/TrEMBL
  dUTPase_1 UniProtKB/TrEMBL
  dUTPase_trimeric UniProtKB/TrEMBL
NCBI Gene DUT ENTREZGENE
PANTHER DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE UniProtKB/TrEMBL
  PTHR11241 UniProtKB/TrEMBL
Pfam dUTPase UniProtKB/TrEMBL
Superfamily-SCOP SSF51283 UniProtKB/TrEMBL
UniProt A0A286ZYB5_PIG UniProtKB/TrEMBL
  A0A287AX05 ENTREZGENE, UniProtKB/TrEMBL
  A0A480PG39 ENTREZGENE, UniProtKB/TrEMBL
  A0A480SPY9 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SHJ9 ENTREZGENE
  A0A4X1SIX5_PIG UniProtKB/TrEMBL
  A0A8D0TIY5_PIG UniProtKB/TrEMBL
  A0A8D0TL80_PIG UniProtKB/TrEMBL
  A0A8D0VKQ3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0VLG6_PIG UniProtKB/TrEMBL
  A0A8D1CZC8_PIG UniProtKB/TrEMBL
UniProt Secondary A0A4X1SHJ9 UniProtKB/TrEMBL
  A0A5G2QVU4 UniProtKB/TrEMBL