FSBP (fibrinogen silencer binding protein) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: FSBP (fibrinogen silencer binding protein) Sus scrofa
Analyze
Symbol: FSBP (Ensembl: RAD54B)
Name: fibrinogen silencer binding protein
RGD ID: 13854192
Description: ENCODES a protein that exhibits identical protein binding (ortholog); FOUND IN nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: fibrinogen silencer-binding protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl442,266,605 - 42,369,447 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1442,303,372 - 42,312,148 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2445,667,532 - 45,678,838 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (ISO)
nucleus  (IBA,IEA)

Molecular Function

References

Genomics

Comparative Map Data
FSBP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl442,266,605 - 42,369,447 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1442,303,372 - 42,312,148 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2445,667,532 - 45,678,838 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FSBP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38894,427,716 - 94,436,944 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl894,378,377 - 94,436,952 (-)EnsemblGRCh38hg38GRCh38
GRCh37895,439,944 - 95,449,172 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map8q22.1NCBI
HuRef890,648,874 - 90,658,114 (-)NCBIHuRef
CHM1_1895,480,195 - 95,489,435 (-)NCBICHM1_1
T2T-CHM13v2.0895,552,557 - 95,561,784 (-)NCBIT2T-CHM13v2.0
Fsbp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39411,579,662 - 11,587,802 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl411,579,665 - 11,587,591 (+)EnsemblGRCm39 Ensembl
GRCm38411,579,662 - 11,587,802 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl411,579,665 - 11,587,591 (+)EnsemblGRCm38mm10GRCm38
MGSCv37411,506,809 - 11,514,964 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera411,391,130 - 11,399,285 (+)NCBICelera
Cytogenetic Map4A1NCBI
cM Map45.11NCBI
Fsbp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8529,855,340 - 29,861,613 (+)NCBIGRCr8
mRatBN7.2525,058,003 - 25,064,276 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl525,032,066 - 25,104,616 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx527,188,771 - 27,195,079 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0528,781,524 - 28,787,828 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0528,730,228 - 28,736,542 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0525,167,350 - 25,173,138 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl525,168,295 - 25,172,939 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0529,882,601 - 29,888,195 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera524,395,498 - 24,401,286 (+)NCBICelera
Cytogenetic Map5q13NCBI
Fsbp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541710,649,826 - 10,655,545 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541710,649,826 - 10,655,277 (-)NCBIChiLan1.0ChiLan1.0
FSBP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27111,759,885 - 111,769,182 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1887,296,937 - 87,306,202 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0891,050,692 - 91,059,978 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1892,994,213 - 93,003,441 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl892,939,535 - 93,034,060 (-)Ensemblpanpan1.1panPan2
FSBP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12939,149,402 - 39,159,789 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2939,310,351 - 39,320,381 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02939,353,156 - 39,363,197 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2939,293,199 - 39,402,284 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12939,366,284 - 39,376,318 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02939,361,835 - 39,371,871 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02939,803,330 - 39,813,360 (-)NCBIUU_Cfam_GSD_1.0
Fsbp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530340,360,535 - 40,371,278 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365447,426,292 - 7,431,584 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365447,425,933 - 7,432,292 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FSBP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1889,404,473 - 89,413,721 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl889,404,173 - 89,413,665 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603951,423,853 - 51,434,096 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fsbp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247631,825,873 - 1,831,723 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247631,825,599 - 1,831,028 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FSBP
170 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 7 4 3 5 2 23 1 3 1
Below cutoff 3 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000028741   ⟹   ENSSSCP00000020989
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl442,305,705 - 42,315,247 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000040934   ⟹   ENSSSCP00000042056
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl442,266,605 - 42,369,447 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000096458   ⟹   ENSSSCP00000081104
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl442,266,605 - 42,311,869 (+)Ensembl
RefSeq Acc Id: XM_003355021   ⟹   XP_003355069
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1442,303,372 - 42,312,148 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003355069   ⟸   XM_003355021
- UniProtKB: F1RY46 (UniProtKB/TrEMBL),   A0A8D1EJZ0 (UniProtKB/TrEMBL),   A0A8D1RB67 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000020989   ⟸   ENSSSCT00000028741
RefSeq Acc Id: ENSSSCP00000081104   ⟸   ENSSSCT00000096458
RefSeq Acc Id: ENSSSCP00000042056   ⟸   ENSSSCT00000040934
Protein Domains
Myb/SANT-like DNA-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000024290 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005008486 UniProtKB/TrEMBL
  ENSSSCG00015040726 UniProtKB/TrEMBL
  ENSSSCG00025060631 UniProtKB/TrEMBL
  ENSSSCG00030038740 UniProtKB/TrEMBL
  ENSSSCG00035059264 UniProtKB/TrEMBL
  ENSSSCG00040042415 UniProtKB/TrEMBL
  ENSSSCG00045031657 UniProtKB/TrEMBL
  ENSSSCG00050023411 UniProtKB/TrEMBL
  ENSSSCG00055022197 UniProtKB/TrEMBL
  ENSSSCG00060032996 UniProtKB/TrEMBL
  ENSSSCG00065018454 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000028741 ENTREZGENE
  ENSSSCT00000028741.3 UniProtKB/TrEMBL
  ENSSSCT00000096458.1 UniProtKB/TrEMBL
  ENSSSCT00005012893.1 UniProtKB/TrEMBL
  ENSSSCT00015054258.1 UniProtKB/TrEMBL
  ENSSSCT00025082993.1 UniProtKB/TrEMBL
  ENSSSCT00030053914.1 UniProtKB/TrEMBL
  ENSSSCT00035079369.1 UniProtKB/TrEMBL
  ENSSSCT00040056752.1 UniProtKB/TrEMBL
  ENSSSCT00045053986.1 UniProtKB/TrEMBL
  ENSSSCT00050031588.1 UniProtKB/TrEMBL
  ENSSSCT00055043565.1 UniProtKB/TrEMBL
  ENSSSCT00060044666.1 UniProtKB/TrEMBL
  ENSSSCT00065024527.1 UniProtKB/TrEMBL
InterPro FSBP UniProtKB/TrEMBL
  Myb_DNA-bind_5 UniProtKB/TrEMBL
KEGG Report ssc:100624535 UniProtKB/TrEMBL
NCBI Gene FSBP ENTREZGENE
PANTHER FIBRINOGEN SILENCER-BINDING PROTEIN UniProtKB/TrEMBL
  PTHR15386 UniProtKB/TrEMBL
Pfam Myb_DNA-bind_5 UniProtKB/TrEMBL
UniProt A0A8D1EJZ0 ENTREZGENE
  A0A8D1RB67 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FQ51_PIG UniProtKB/TrEMBL
  F1RY46 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A8D1EJZ0 UniProtKB/TrEMBL
VGNC ID VGNC:98795 ENTREZGENE