SLC13A3 (solute carrier family 13 member 3) - Rat Genome Database
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Gene: SLC13A3 (solute carrier family 13 member 3) Sus scrofa
Analyze
Symbol: SLC13A3
Name: solute carrier family 13 member 3
RGD ID: 13853866
Description: ENCODES a protein that exhibits citrate transmembrane transporter activity (ortholog); dicarboxylic acid transmembrane transporter activity (ortholog); high-affinity sodium:dicarboxylate symporter activity (ortholog); INVOLVED IN aspartate transmembrane transport (ortholog); citrate transport (ortholog); dicarboxylic acid transport (ortholog); ASSOCIATED WITH Acute Reversible Leukoencephalopathy with Increased Urinary Alpha-ketoglutarate (ortholog); prostate cancer (ortholog); visual epilepsy (ortholog); FOUND IN basolateral plasma membrane (ortholog); integral component of membrane (ortholog); membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1748,714,183 - 48,815,123 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11748,714,180 - 48,792,280 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21754,563,504 - 54,593,504 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
SLC13A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1748,714,183 - 48,815,123 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11748,714,180 - 48,792,280 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21754,563,504 - 54,593,504 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC13A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2046,557,823 - 46,684,467 (-)EnsemblGRCh38hg38GRCh38
GRCh382046,557,828 - 46,684,485 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372045,186,467 - 45,313,124 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362044,619,870 - 44,746,514 (-)NCBINCBI36hg18NCBI36
Build 342044,619,869 - 44,713,505NCBI
Celera2041,897,908 - 42,024,605 (-)NCBI
Cytogenetic Map20q13.12ENTREZGENE
HuRef2041,927,384 - 42,054,359 (-)NCBIHuRef
CHM1_12045,089,076 - 45,216,112 (-)NCBICHM1_1
Slc13a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392165,247,215 - 165,315,117 (-)NCBIGRCm39mm39
GRCm39 Ensembl2165,246,948 - 165,315,150 (-)Ensembl
GRCm382165,405,295 - 165,473,197 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2165,405,028 - 165,473,230 (-)EnsemblGRCm38mm10GRCm38
MGSCv372165,230,795 - 165,298,697 (-)NCBIGRCm37mm9NCBIm37
MGSCv362165,096,500 - 165,164,402 (-)NCBImm8
Celera2171,347,492 - 171,415,775 (-)NCBICelera
Cytogenetic Map2H3NCBI
Slc13a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23154,141,878 - 154,204,604 (-)NCBI
Rnor_6.0 Ensembl3162,084,315 - 162,147,393 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.03162,084,336 - 162,147,398 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03168,266,585 - 168,329,647 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43156,447,900 - 156,510,620 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13156,353,929 - 156,416,658 (-)NCBI
Celera3152,740,642 - 152,803,198 (-)NCBICelera
Cytogenetic Map3q42NCBI
Slc13a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544510,755,312 - 10,831,900 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544510,755,336 - 10,829,797 (+)NCBIChiLan1.0ChiLan1.0
SLC13A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12043,975,373 - 44,101,788 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2043,977,568 - 44,068,886 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02042,890,251 - 43,018,635 (-)NCBIMhudiblu_PPA_v0panPan3
SLC13A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2433,809,731 - 33,884,139 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12433,810,594 - 33,884,169 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Slc13a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365146,554,605 - 6,594,014 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC13A3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1217,233,287 - 17,324,761 (+)NCBI
ChlSab1.1 Ensembl217,233,346 - 17,324,951 (+)Ensembl
Slc13a3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247908,028,054 - 8,104,123 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2
Low 20 1 1
Below cutoff 3 1 1 2 1 1 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000044150   ⟹   ENSSSCP00000038402
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1748,714,183 - 48,792,141 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000057552   ⟹   ENSSSCP00000048796
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1748,716,741 - 48,792,141 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000080933   ⟹   ENSSSCP00000067175
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1748,746,265 - 48,815,123 (-)Ensembl
RefSeq Acc Id: XM_003483976   ⟹   XP_003484024
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11748,717,169 - 48,792,280 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021078284   ⟹   XP_020933943
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11748,717,171 - 48,792,135 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021078285   ⟹   XP_020933944
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11748,714,180 - 48,758,963 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003484024 (Get FASTA)   NCBI Sequence Viewer  
  XP_020933943 (Get FASTA)   NCBI Sequence Viewer  
  XP_020933944 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020933944   ⟸   XM_021078285
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_003484024   ⟸   XM_003483976
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020933943   ⟸   XM_021078284
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000038402   ⟸   ENSSSCT00000044150
RefSeq Acc Id: ENSSSCP00000067175   ⟸   ENSSSCT00000080933
RefSeq Acc Id: ENSSSCP00000048796   ⟸   ENSSSCT00000057552


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000035906 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070014249 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000038402 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000048796 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000067175 UniProtKB/TrEMBL
  ENSSSCP00070023270 UniProtKB/TrEMBL
  ENSSSCP00070023275 UniProtKB/TrEMBL
  ENSSSCP00070023279 UniProtKB/TrEMBL
  ENSSSCP00070023290 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000044150 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000057552 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000080933 UniProtKB/TrEMBL
  ENSSSCT00070027949 UniProtKB/TrEMBL
  ENSSSCT00070027955 UniProtKB/TrEMBL
  ENSSSCT00070027959 UniProtKB/TrEMBL
  ENSSSCT00070027971 UniProtKB/TrEMBL
InterPro SLC13A/DASS UniProtKB/TrEMBL
NCBI Gene SLC13A3 ENTREZGENE
Pfam Na_sulph_symp UniProtKB/TrEMBL
UniProt A0A287A374_PIG UniProtKB/TrEMBL
  A0A287AXW9_PIG UniProtKB/TrEMBL
  A0A4X1U5Z3_PIG UniProtKB/TrEMBL
  A0A4X1U5Z4_PIG UniProtKB/TrEMBL
  A0A4X1U5Z9_PIG UniProtKB/TrEMBL
  A0A4X1U613_PIG UniProtKB/TrEMBL
  A0A5G2R995_PIG UniProtKB/TrEMBL
VGNC ID VGNC:95612 ENTREZGENE