SLC13A3 (solute carrier family 13 member 3) - Rat Genome Database

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Gene: SLC13A3 (solute carrier family 13 member 3) Sus scrofa
Analyze
Symbol: SLC13A3
Name: solute carrier family 13 member 3
RGD ID: 13853866
Description: ENCODES a protein that exhibits citrate transmembrane transporter activity (ortholog); dicarboxylic acid transmembrane transporter activity (ortholog); L-aspartate transmembrane transporter activity (ortholog); INVOLVED IN aspartate transmembrane transport (ortholog); citrate transport (ortholog); dicarboxylic acid transport (ortholog); ASSOCIATED WITH Acute Reversible Leukoencephalopathy with Increased Urinary Alpha-ketoglutarate (ortholog); adenosine deaminase deficiency (ortholog); focal epilepsy (ortholog); FOUND IN basolateral plasma membrane (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1748,714,183 - 48,792,141 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11748,714,180 - 48,792,280 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21754,563,504 - 54,593,504 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC13A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1748,714,183 - 48,792,141 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11748,714,180 - 48,792,280 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21754,563,504 - 54,593,504 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC13A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382046,557,828 - 46,684,485 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2046,557,823 - 46,684,467 (-)EnsemblGRCh38hg38GRCh38
GRCh372045,186,467 - 45,313,124 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362044,619,870 - 44,746,514 (-)NCBINCBI36Build 36hg18NCBI36
Build 342044,619,869 - 44,713,505NCBI
Celera2041,897,908 - 42,024,605 (-)NCBICelera
Cytogenetic Map20q13.12ENTREZGENE
HuRef2041,927,384 - 42,054,359 (-)NCBIHuRef
CHM1_12045,089,076 - 45,216,112 (-)NCBICHM1_1
T2T-CHM13v2.02048,293,974 - 48,420,764 (-)NCBIT2T-CHM13v2.0
Slc13a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392165,247,215 - 165,315,117 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2165,246,948 - 165,315,150 (-)EnsemblGRCm39 Ensembl
GRCm382165,405,295 - 165,473,197 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2165,405,028 - 165,473,230 (-)EnsemblGRCm38mm10GRCm38
MGSCv372165,230,795 - 165,298,697 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362165,096,500 - 165,164,402 (-)NCBIMGSCv36mm8
Celera2171,347,492 - 171,415,775 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map285.54NCBI
Slc13a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83174,561,174 - 174,623,893 (-)NCBIGRCr8
mRatBN7.23154,141,878 - 154,204,604 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3154,141,872 - 154,204,606 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3157,950,554 - 158,014,103 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03166,449,536 - 166,513,085 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03164,191,155 - 164,254,719 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03162,084,336 - 162,147,398 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3162,084,315 - 162,147,393 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03168,266,585 - 168,329,647 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43156,447,900 - 156,510,620 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13156,353,929 - 156,416,658 (-)NCBI
Celera3152,740,642 - 152,803,198 (-)NCBICelera
Cytogenetic Map3q42NCBI
Slc13a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544510,755,312 - 10,831,900 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544510,755,336 - 10,829,797 (+)NCBIChiLan1.0ChiLan1.0
SLC13A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22152,293,088 - 52,405,943 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12052,286,193 - 52,399,047 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02042,890,251 - 43,018,635 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12043,975,373 - 44,101,788 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2043,977,568 - 44,068,886 (-)Ensemblpanpan1.1panPan2
SLC13A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12433,810,594 - 33,884,169 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2433,809,731 - 33,884,139 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2433,269,702 - 33,344,444 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02434,518,068 - 34,593,024 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2434,518,081 - 34,593,006 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12433,775,187 - 33,849,803 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02433,891,902 - 33,966,700 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02434,430,790 - 34,505,677 (-)NCBIUU_Cfam_GSD_1.0
Slc13a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640191,100,938 - 191,140,371 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365146,554,608 - 6,592,671 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365146,554,605 - 6,594,014 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC13A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1217,233,287 - 17,324,761 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl217,233,346 - 17,324,951 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605065,843,126 - 65,967,625 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc13a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247908,028,103 - 8,105,871 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247908,028,054 - 8,104,123 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC13A3
1877 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
3 1 21 1 2 2 7 4 21 3 3 3

Sequence


Ensembl Acc Id: ENSSSCT00000044150   ⟹   ENSSSCP00000038402
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1748,714,183 - 48,792,134 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000057552   ⟹   ENSSSCP00000048796
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1748,716,743 - 48,792,141 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000080933   ⟹   ENSSSCP00000067175
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1748,746,265 - 48,815,123 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000094937   ⟹   ENSSSCP00000079478
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1748,717,177 - 48,792,141 (-)Ensembl
RefSeq Acc Id: XM_003483976   ⟹   XP_003484024
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11748,717,169 - 48,792,280 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021078284   ⟹   XP_020933943
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11748,717,171 - 48,792,135 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021078285   ⟹   XP_020933944
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11748,714,180 - 48,758,963 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020933944   ⟸   XM_021078285
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_003484024   ⟸   XM_003483976
- Peptide Label: isoform X1
- UniProtKB: A0A481CIY5 (UniProtKB/TrEMBL),   A0A4X1U5Z4 (UniProtKB/TrEMBL),   A0A8D0HVD5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020933943   ⟸   XM_021078284
- Peptide Label: isoform X2
- UniProtKB: A0A287AXW9 (UniProtKB/TrEMBL),   A0A4X1U613 (UniProtKB/TrEMBL),   A0A8D1U455 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000038402   ⟸   ENSSSCT00000044150
Ensembl Acc Id: ENSSSCP00000067175   ⟸   ENSSSCT00000080933
Ensembl Acc Id: ENSSSCP00000048796   ⟸   ENSSSCT00000057552
Ensembl Acc Id: ENSSSCP00000079478   ⟸   ENSSSCT00000094937


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000035906 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00035033482 UniProtKB/TrEMBL
  ENSSSCG00045003938 UniProtKB/TrEMBL
  ENSSSCG00055016240 UniProtKB/TrEMBL
  ENSSSCG00065029078 UniProtKB/TrEMBL
  ENSSSCG00070014249 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000044150.3 UniProtKB/TrEMBL
  ENSSSCT00000057552 ENTREZGENE
  ENSSSCT00000057552.3 UniProtKB/TrEMBL
  ENSSSCT00000094937 ENTREZGENE
  ENSSSCT00000094937.1 UniProtKB/TrEMBL
  ENSSSCT00035044404.1 UniProtKB/TrEMBL
  ENSSSCT00045006561.1 UniProtKB/TrEMBL
  ENSSSCT00055032130.1 UniProtKB/TrEMBL
  ENSSSCT00065039236.1 UniProtKB/TrEMBL
  ENSSSCT00065039256.1 UniProtKB/TrEMBL
  ENSSSCT00070027949.1 UniProtKB/TrEMBL
  ENSSSCT00070027955.1 UniProtKB/TrEMBL
  ENSSSCT00070027959.1 UniProtKB/TrEMBL
  ENSSSCT00070027971.1 UniProtKB/TrEMBL
InterPro SLC13A/DASS UniProtKB/TrEMBL
NCBI Gene SLC13A3 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 13 MEMBER UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 13 MEMBER 3 UniProtKB/TrEMBL
Pfam Na_sulph_symp UniProtKB/TrEMBL
UniProt A0A287A374_PIG UniProtKB/TrEMBL
  A0A287AXW9 ENTREZGENE, UniProtKB/TrEMBL
  A0A481CIY5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U5Z3_PIG UniProtKB/TrEMBL
  A0A4X1U5Z4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U5Z9_PIG UniProtKB/TrEMBL
  A0A4X1U613 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0HVD5 ENTREZGENE
  A0A8D1U455 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FJH5_PIG UniProtKB/TrEMBL
VGNC ID VGNC:95612 ENTREZGENE