SLC22A3 (solute carrier family 22 member 3) - Rat Genome Database

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Gene: SLC22A3 (solute carrier family 22 member 3) Sus scrofa
Analyze
Symbol: SLC22A3
Name: solute carrier family 22 member 3
RGD ID: 13853364
Description: ENCODES a protein that exhibits dopamine:sodium symporter activity (ortholog); organic anion transmembrane transporter activity (ortholog); organic cation transmembrane transporter activity (ortholog); INVOLVED IN dopamine transport (ortholog); establishment of localization in cell (ortholog); histamine transport (ortholog); PARTICIPATES IN lamivudine pharmacokinetics pathway; metformin pharmacokinetics pathway; ASSOCIATED WITH 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome (ortholog); Coxsackievirus Infections (ortholog); Kidney Neoplasms (ortholog); FOUND IN apical plasma membrane (inferred); basolateral plasma membrane (inferred); endomembrane system (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: extraneuronal monoamine extraneuronal monoamine; solute carrier family 22 (extraneuronal monoamine transporter), member 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl17,110,074 - 7,207,401 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.117,105,486 - 7,207,395 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.218,787,403 - 8,885,452 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074  


Genomics

Comparative Map Data
SLC22A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl17,110,074 - 7,207,401 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.117,105,486 - 7,207,395 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.218,787,403 - 8,885,452 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC22A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386160,348,378 - 160,452,577 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6160,348,378 - 160,452,577 (+)EnsemblGRCh38hg38GRCh38
GRCh376160,769,410 - 160,873,609 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366160,689,415 - 160,796,004 (+)NCBINCBI36Build 36hg18NCBI36
Build 346160,739,835 - 160,846,425NCBI
Celera6161,420,905 - 161,527,486 (+)NCBICelera
Cytogenetic Map6q25.3NCBI
HuRef6158,244,012 - 158,348,214 (+)NCBIHuRef
CHM1_16161,032,217 - 161,136,415 (+)NCBICHM1_1
T2T-CHM13v2.06161,598,508 - 161,702,771 (+)NCBIT2T-CHM13v2.0
Slc22a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391712,638,859 - 12,726,591 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1712,637,847 - 12,726,591 (-)EnsemblGRCm39 Ensembl
GRCm381712,419,972 - 12,507,704 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1712,418,960 - 12,507,704 (-)EnsemblGRCm38mm10GRCm38
MGSCv371712,612,838 - 12,700,570 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361712,263,330 - 12,351,062 (-)NCBIMGSCv36mm8
Celera1712,450,734 - 12,539,105 (-)NCBICelera
Cytogenetic Map17A1NCBI
cM Map178.52NCBI
Slc22a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8150,783,218 - 50,872,358 (+)NCBIGRCr8
mRatBN7.2148,235,476 - 48,324,617 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl148,235,476 - 48,324,612 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx148,927,055 - 49,016,211 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0154,912,824 - 55,001,976 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0149,002,573 - 49,091,712 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0148,433,079 - 48,521,261 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl148,433,079 - 48,521,256 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0151,234,467 - 51,321,364 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4142,690,158 - 42,781,895 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1142,693,102 - 42,784,835 (+)NCBI
Celera144,028,160 - 44,116,659 (+)NCBICelera
Cytogenetic Map1q11NCBI
Slc22a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543920,367,333 - 20,476,891 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543920,367,324 - 20,476,891 (-)NCBIChiLan1.0ChiLan1.0
SLC22A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25180,457,233 - 180,561,182 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16178,361,200 - 178,465,143 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06158,240,390 - 158,344,338 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16163,232,539 - 163,351,256 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6163,247,643 - 163,349,735 (+)Ensemblpanpan1.1panPan2
SLC22A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1149,407,949 - 49,496,627 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl149,407,966 - 49,496,620 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha150,250,859 - 50,339,627 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0149,593,106 - 49,681,894 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl149,593,126 - 49,681,430 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1149,475,470 - 49,564,251 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0149,347,643 - 49,435,978 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0149,962,647 - 50,051,070 (+)NCBIUU_Cfam_GSD_1.0
Slc22a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946144,441,761 - 144,522,387 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648911,693,755 - 11,772,628 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648911,693,755 - 11,774,380 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC22A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11387,971,305 - 88,076,468 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1387,971,392 - 88,074,946 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604060,348,130 - 60,452,975 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc22a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248552,399,671 - 2,516,237 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248552,402,096 - 2,516,249 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC22A3
5018 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
10 4 21 3 4 14 12 21 3 6

Sequence


Ensembl Acc Id: ENSSSCT00000004467   ⟹   ENSSSCP00000004365
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl17,110,074 - 7,207,401 (-)Ensembl
RefSeq Acc Id: XM_003121106   ⟹   XP_003121154
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.117,110,070 - 7,207,395 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021086250   ⟹   XP_020941909
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.117,105,486 - 7,207,388 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020941909   ⟸   XM_021086250
- Peptide Label: isoform X2
- UniProtKB: A0A8D1JJY9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003121154   ⟸   XM_003121106
- Peptide Label: isoform X1
- UniProtKB: F1SB80 (UniProtKB/TrEMBL),   A0A4X1VVG5 (UniProtKB/TrEMBL),   A0A8D1HLA9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000004365   ⟸   ENSSSCT00000004467

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004039 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025045946 UniProtKB/TrEMBL
  ENSSSCG00030050905 UniProtKB/TrEMBL
  ENSSSCG00035060874 UniProtKB/TrEMBL
  ENSSSCG00040015448 UniProtKB/TrEMBL
  ENSSSCG00045016809 UniProtKB/TrEMBL
  ENSSSCG00050003566 UniProtKB/TrEMBL
  ENSSSCG00055011308 UniProtKB/TrEMBL
  ENSSSCG00060021663 UniProtKB/TrEMBL
  ENSSSCG00065047340 UniProtKB/TrEMBL
  ENSSSCG00070026982 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000004467 ENTREZGENE
  ENSSSCT00000004467.5 UniProtKB/TrEMBL
  ENSSSCT00025062400.1 UniProtKB/TrEMBL
  ENSSSCT00030070925.1 UniProtKB/TrEMBL
  ENSSSCT00035081742.1 UniProtKB/TrEMBL
  ENSSSCT00035081757.1 UniProtKB/TrEMBL
  ENSSSCT00040020815.1 UniProtKB/TrEMBL
  ENSSSCT00045028552.1 UniProtKB/TrEMBL
  ENSSSCT00050004805.1 UniProtKB/TrEMBL
  ENSSSCT00050004842.1 UniProtKB/TrEMBL
  ENSSSCT00055022201.1 UniProtKB/TrEMBL
  ENSSSCT00055022234.1 UniProtKB/TrEMBL
  ENSSSCT00060029371.1 UniProtKB/TrEMBL
  ENSSSCT00065064748.1 UniProtKB/TrEMBL
  ENSSSCT00070054106.1 UniProtKB/TrEMBL
  ENSSSCT00070054107.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS UniProtKB/TrEMBL
  MFS_dom UniProtKB/TrEMBL
  MFS_sugar_transport-like UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
  Orgcat_transp/SVOP UniProtKB/TrEMBL
  Sugar_transporter_CS UniProtKB/TrEMBL
KEGG Report ssc:100142677 UniProtKB/TrEMBL
NCBI Gene SLC22A3 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 22 MEMBER UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 22 MEMBER 3 UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
  Sugar_tr UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
  SUGAR_TRANSPORT_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A4X1VVG5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VW68_PIG UniProtKB/TrEMBL
  A0A8D1HLA9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1JJY9 ENTREZGENE, UniProtKB/TrEMBL
  B1PM34_PIG UniProtKB/TrEMBL
  F1SB80 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:92980 ENTREZGENE