CA13 (carbonic anhydrase 13) - Rat Genome Database

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Gene: CA13 (carbonic anhydrase 13) Sus scrofa
Analyze
Symbol: CA13
Name: carbonic anhydrase 13
RGD ID: 13853038
Description: ENCODES a protein that exhibits carbonate dehydratase activity (inferred); zinc ion binding (inferred); FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC100152714
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl451,407,473 - 51,468,961 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1451,406,755 - 51,468,971 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2456,422,548 - 56,483,985 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463  


Genomics

Comparative Map Data
CA13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl451,407,473 - 51,468,961 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1451,406,755 - 51,468,971 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2456,422,548 - 56,483,985 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CA13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl885,220,587 - 85,284,073 (+)EnsemblGRCh38hg38GRCh38
GRCh38885,245,458 - 85,284,073 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37886,157,687 - 86,196,302 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36886,345,259 - 86,383,554 (+)NCBINCBI36hg18NCBI36
Build 34886,345,258 - 86,383,554NCBI
Celera882,162,764 - 82,201,350 (+)NCBI
Cytogenetic Map8q21.2NCBI
HuRef881,651,766 - 81,690,497 (+)NCBIHuRef
CHM1_1886,209,312 - 86,248,027 (+)NCBICHM1_1
Car13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39314,706,787 - 14,728,062 (+)NCBIGRCm39mm39
GRCm39 Ensembl314,706,787 - 14,728,062 (+)Ensembl
GRCm38314,641,727 - 14,663,002 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl314,641,727 - 14,663,002 (+)EnsemblGRCm38mm10GRCm38
MGSCv37314,641,727 - 14,663,002 (+)NCBIGRCm37mm9NCBIm37
MGSCv36314,618,518 - 14,639,139 (+)NCBImm8
Celera314,649,523 - 14,670,798 (+)NCBICelera
Cytogenetic Map3A1NCBI
Ca13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2286,928,401 - 86,959,525 (-)NCBI
Rnor_6.0 Ensembl288,282,961 - 88,314,254 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0288,282,961 - 88,314,254 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02108,055,053 - 108,086,130 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4288,271,908 - 88,309,336 (-)NCBIRGSC3.4rn4RGSC3.4
Celera282,519,345 - 82,549,951 (-)NCBICelera
Cytogenetic Map2q23NCBI
Ca13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554173,194,501 - 3,219,755 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554173,194,961 - 3,219,019 (+)NCBIChiLan1.0ChiLan1.0
CA13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1883,381,011 - 83,419,335 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl883,381,011 - 83,419,446 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0881,770,852 - 81,809,750 (+)NCBIMhudiblu_PPA_v0panPan3
CA13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12931,784,614 - 31,833,429 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2931,782,680 - 31,850,405 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2932,067,124 - 32,112,791 (+)NCBI
ROS_Cfam_1.02931,932,517 - 31,980,427 (+)NCBI
UMICH_Zoey_3.12931,988,167 - 32,033,742 (+)NCBI
UNSW_CanFamBas_1.02932,006,949 - 32,052,786 (+)NCBI
UU_Cfam_GSD_1.02932,390,753 - 32,439,552 (+)NCBI
Ca13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530347,586,067 - 47,615,381 (-)NCBI
SpeTri2.0NW_004936544177,336 - 206,638 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CA13
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1880,617,375 - 80,654,408 (+)NCBI
ChlSab1.1 Ensembl880,617,898 - 80,651,692 (+)Ensembl
Ca13
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247446,418,487 - 6,447,023 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 8 2 1 5 2 21 2 2 3
Below cutoff 2 2 2 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000006736   ⟹   ENSSSCP00000006553
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl451,408,192 - 51,449,084 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000043037   ⟹   ENSSSCP00000047050
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl451,415,519 - 51,449,199 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000057817   ⟹   ENSSSCP00000048222
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl451,407,473 - 51,468,762 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000060972   ⟹   ENSSSCP00000039659
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl451,408,154 - 51,468,961 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000073326   ⟹   ENSSSCP00000063726
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl451,415,519 - 51,468,779 (-)Ensembl
RefSeq Acc Id: XM_001924462   ⟹   XP_001924497
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1451,406,755 - 51,449,248 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013996642   ⟹   XP_013852096
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1451,406,755 - 51,449,163 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013996643   ⟹   XP_013852097
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1451,406,755 - 51,468,971 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002343230
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1451,409,594 - 51,449,200 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_001924497 (Get FASTA)   NCBI Sequence Viewer  
  XP_013852096 (Get FASTA)   NCBI Sequence Viewer  
  XP_013852097 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein JAG69681 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013852097   ⟸   XM_013996643
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_001924497   ⟸   XM_001924462
- Peptide Label: isoform X1
- UniProtKB: A0A287AWD8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013852096   ⟸   XM_013996642
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000006553   ⟸   ENSSSCT00000006736
RefSeq Acc Id: ENSSSCP00000039659   ⟸   ENSSSCT00000060972
RefSeq Acc Id: ENSSSCP00000063726   ⟸   ENSSSCT00000073326
RefSeq Acc Id: ENSSSCP00000047050   ⟸   ENSSSCT00000043037
RefSeq Acc Id: ENSSSCP00000048222   ⟸   ENSSSCT00000057817
Protein Domains
Alpha-carbonic anhydrase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006143 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070016407 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000006553 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000039659 UniProtKB/TrEMBL
  ENSSSCP00000047050 UniProtKB/TrEMBL
  ENSSSCP00000048222 UniProtKB/TrEMBL
  ENSSSCP00000063726 UniProtKB/TrEMBL
  ENSSSCP00070027013 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000006736 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000043037 UniProtKB/TrEMBL
  ENSSSCT00000057817 UniProtKB/TrEMBL
  ENSSSCT00000060972 UniProtKB/TrEMBL
  ENSSSCT00000073326 UniProtKB/TrEMBL
  ENSSSCT00070032368 UniProtKB/TrEMBL
Gene3D-CATH 3.10.200.10 UniProtKB/TrEMBL
InterPro CA_dom UniProtKB/TrEMBL
  CA_dom_sf UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class_CS UniProtKB/TrEMBL
KEGG Report ssc:100152714 UniProtKB/TrEMBL
NCBI Gene LOC100152714 ENTREZGENE
PANTHER PTHR18952 UniProtKB/TrEMBL
Pfam Carb_anhydrase UniProtKB/TrEMBL
PROSITE ALPHA_CA_1 UniProtKB/TrEMBL
  ALPHA_CA_2 UniProtKB/TrEMBL
SMART Carb_anhydrase UniProtKB/TrEMBL
Superfamily-SCOP SSF51069 UniProtKB/TrEMBL
UniProt A0A287A767_PIG UniProtKB/TrEMBL
  A0A287ASJ5_PIG UniProtKB/TrEMBL
  A0A287AWD8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UGB0_PIG UniProtKB/TrEMBL
  A0A5G2QIJ6_PIG UniProtKB/TrEMBL
  F1RXC0_PIG UniProtKB/TrEMBL
VGNC ID VGNC:98745 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-03-10 CA13  carbonic anhydrase 13  LOC100152714  carbonic anhydrase 13  Symbol and/or name change 5135510 APPROVED