DEPDC1B (DEP domain containing 1B)

Gene: DEPDC1B (DEP domain containing 1B) Sus scrofa

Analyze

Symbol:

DEPDC1B

Name:

DEP domain containing 1B

RGD ID:

13852835

Description:

ENCODES a protein that exhibits fatty acid elongase activity (inferred); transferase activity (inferred); INVOLVED IN cell migration (inferred); cellular lipid metabolic process (inferred); fatty acid biosynthetic process (inferred); ASSOCIATED WITH Acrodysostosis 2, with or without Hormone Resistance (ortholog); Cockayne syndrome A (ortholog); COVID-19 (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

DEP domain-containing protein 1B

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DEPDC1B (DEP domain containing 1B)	HGNC	EggNOG, Ensembl, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Depdc1b (DEP domain containing 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Depdc1b (DEP domain containing 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Depdc1b (DEP domain containing 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DEPDC1B (DEP domain containing 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DEPDC1B (DEP domain containing 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Depdc1b (DEP domain containing 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DEPDC1B (DEP domain containing 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Depdc1b (DEP domain containing 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	39,466,497 - 39,557,840 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	39,466,496 - 39,558,750 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	42,377,619 - 42,469,742 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Acrodysostosis 2, with or without Hormone Resistance (ISO)

Cockayne syndrome A (ISO)

COVID-19 (ISO)

genetic disease (ISO)

hepatocellular carcinoma (ISO)

Neurodevelopmental Disorders (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell migration (IEA)

cellular lipid metabolic process (IEA)

fatty acid biosynthetic process (IEA)

fatty acid elongation, monounsaturated fatty acid (IEA)

fatty acid elongation, polyunsaturated fatty acid (IEA)

fatty acid elongation, saturated fatty acid (IEA)

intracellular signal transduction (IEA)

lipid biosynthetic process (IEA)

long-chain fatty-acyl-CoA biosynthetic process (IEA)

positive regulation of Wnt signaling pathway (IEA)

unsaturated fatty acid biosynthetic process (IEA)

very long-chain fatty acid biosynthetic process (IEA)

Cellular Component

endoplasmic reticulum (IEA)

endoplasmic reticulum membrane (IEA)

membrane (IEA)

Molecular Function

fatty acid elongase activity (IEA)

transferase activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

DEPDC1B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	39,466,497 - 39,557,840 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	39,466,496 - 39,558,750 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	42,377,619 - 42,469,742 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DEPDC1B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	60,596,912 - 60,700,166 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	60,596,912 - 60,700,190 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	59,892,739 - 59,995,993 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	59,928,496 - 60,031,713 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	59,928,496 - 60,031,713	NCBI
Celera	5	56,833,846 - 56,936,903 (-)	NCBI		Celera
Cytogenetic Map	5	q12.1	NCBI
HuRef	5	56,850,495 - 56,954,045 (-)	NCBI		HuRef
CHM1_1	5	59,892,397 - 59,995,471 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	61,415,059 - 61,518,602 (-)	NCBI		T2T-CHM13v2.0

Depdc1b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	108,452,592 - 108,526,100 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	108,452,866 - 108,544,316 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	108,316,014 - 108,389,566 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	108,316,332 - 108,407,782 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	109,106,531 - 109,179,751 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	109,437,084 - 109,510,306 (+)	NCBI		MGSCv36	mm8
Celera	13	112,655,500 - 112,730,861 (+)	NCBI		Celera
Cytogenetic Map	13	D2.1	NCBI
cM Map	13	59.69	NCBI

Depdc1b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	41,605,686 - 41,697,207 (+)	NCBI		GRCr8
mRatBN7.2	2	39,891,163 - 39,963,779 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	39,891,481 - 39,963,779 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	46,999,622 - 47,072,141 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	45,058,313 - 45,130,810 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	39,901,707 - 39,974,649 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	39,980,796 - 40,069,982 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	40,000,313 - 40,069,975 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	59,075,277 - 59,147,317 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	39,632,210 - 39,700,199 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	39,552,625 - 39,619,745 (+)	NCBI
Celera	2	35,731,136 - 35,799,432 (+)	NCBI		Celera
Cytogenetic Map	2	q14	NCBI

Depdc1b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955446	7,792,756 - 7,858,615 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955446	7,792,778 - 7,857,218 (+)	NCBI	ChiLan1.0	ChiLan1.0

DEPDC1B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	53,210,964 - 53,317,425 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	51,364,592 - 51,471,053 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	53,300,423 - 53,406,947 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	54,940,401 - 55,046,660 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	54,951,596 - 55,045,820 (+)	Ensembl	panpan1.1		panPan2

DEPDC1B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	47,295,970 - 47,369,234 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	47,296,656 - 47,482,064 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	44,371,766 - 44,454,032 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	47,772,941 - 47,855,265 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	47,773,401 - 47,855,232 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	44,843,626 - 44,925,660 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	45,622,925 - 45,705,207 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	46,481,956 - 46,564,080 (-)	NCBI		UU_Cfam_GSD_1.0

Depdc1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	198,786,842 - 198,905,014 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936480	7,750,241 - 7,841,536 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936480	7,750,244 - 7,841,556 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DEPDC1B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	56,770,728 - 56,882,062 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	56,770,727 - 56,863,006 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666049	5,256,122 - 5,372,172 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Depdc1b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624815	9,289,292 - 9,371,716 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624815	9,289,221 - 9,372,580 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in DEPDC1B
2400 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003133987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013982691	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU570846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01029803	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000018439 ⟹ ENSSSCP00000017940

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	16	39,467,319 - 39,557,840 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000041441 ⟹ ENSSSCP00000054294

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	16	39,466,505 - 39,557,828 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000048648 ⟹ ENSSSCP00000052782

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	16	39,589,016 - 39,610,378 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000050166 ⟹ ENSSSCP00000041126

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	16	39,589,032 - 39,680,146 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000057726 ⟹ ENSSSCP00000059406

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	16	39,589,032 - 39,680,173 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000062000 ⟹ ENSSSCP00000058995

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	16	39,588,129 - 39,643,410 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000081014 ⟹ ENSSSCP00000062524

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	16	39,466,494 - 39,643,410 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000090246 ⟹ ENSSSCP00000060855

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	16	39,466,497 - 39,557,840 (-)	Ensembl

RefSeq Acc Id:

XM_003133987 ⟹ XP_003134035

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	16	39,466,496 - 39,558,745 (-)	NCBI

Sequence:

show sequence

TATCATCTCAGGAATTTTGAGGGCTTTCTAAAATGCAGCTGAGGACATACCTAAAGCAGCAAAG
GGAGGAAGAGTATTAACAGAGGGTGGGAGTCTGATCCTTTGCTCTTTCTCATGATATTGCATCC
TGAATACTCGCTCAGGTGACCAGATTTGAATTTTGAACTCTAGTAGTAGGTATAGAGTGGTGAC
TTCATTTGTCCCTTTAAACAATTGCAAATTAGACAATCAATTCCTAGCGGGAAAATTCTAAGCA
GCAAAAAAAAAAGGCTCACAGCCCTGTGGCAAAAGACTGAAAATTTCAGTCCAGTCCAAAAAAA
CAAAGAAAAATTCCAGGGAAAGATGAGTCTACCAAAAAAAAAAAAAAAAAAACAAAAAACAAAA
AACCCCACAAAAAACACACAAAAAACAAACAACAACAACAACAACAAAAAACTACACAGGAAGC
TGAATCGGGCTCTTTCCCAGCTCTTTAGTGTTCTAATTCGCTGTCGACACTCCCTGTGGCCAAG
TGCTCTTATCTAGCTTTTTCAAGCGTTCCTCCATTTGAAGAGTCTGTCCACTCGCCTCATTTCA
CCACCTGCTTCTCCCAATCTCAGTTGCACCGCCAGGTTCACGGTGCACTTGGAAGGGTGGACAG
GAATTTATCTATTCAGTGCGGCTCGGCTTCGGTCACTGAATTACACAGGTCCATCGATCCTTCG
TGCGGAGACTGCCTGCGACTGGGTGCGGGGGCTCCTCCACTGTAGCTGTGAGCCTAATGATCGC
AAGCCTGCGGGAGGTCTCCGAGGAGACGCCCACCTCCCGCTCCCTGGGTTACCGGCGGTCCCGC
CCCTCAGTTCCCGTCACGTGCCGCCGCGCCGCCCAATCAGCGCCCGAAGCGCGCACGCTCAGGA
TTCAAACTGCGGCGCCTGGGGCTTTCGGGGATTCCACTTGGTGCGGCTGCAGCCCCGGCTGCAT
GAGGGCCATGGAGCACCGCATCGTGGGGCCTGGGCCATACCGGGCCACCAAGCTGTGGAATGAG
ACTGTTGAGCTTTTTCGCGCTAGGATGCCATTACGGAAACATCGCTGTCGTTTCAAAAGCTATG
AACATTGCTTCACAGGGGCTGAAGCTGTGGATTGGCTGCATGAGCTGCTCAGGTGCAGCCAAAA
CTTTGGCCCCGAAGTGACCCGCAAACAAACGGTCCAGCTGCTAAAAAAATTCCTGAAGAATCAT
GTTATTGAAGACATCAAGGGAAAATGGGGTCAGGAAGACTTTGAAGACAACCGTCACTTGTACA
GATTTCCTCCTTCCTCACCCCTGAAACCATACCCAAAGAGGCCCCCATATCAGAAGGATGTTAT
TAAATTTCCGGAATGGAATGATCCCCTACCAGGCACTTCACAGGAAAATATCCCGGTGAGGCCA
GTTGTGATGAATTCTGAGATGTGGTACAAGCGTCACAGTATTGCTATTGGAGAGGTGCCGGCTT
GCCGTCTCATCCACCGCAGACAGCTGACAGAGGCCAATGTGGAAGAAATATGGAAGTCTATGAC
ATTATCATATTTACAGAAAGTCCTTGGCCTGGATTCCTTAGAAGAAGTTTTAGACATTAAACTC
GTCAACTCCAAGTTCATCATCCATAATGTATACAGTGTGAGCAAGCAGGGGGTTGTTATCCTTG
ATGACAAGTCAAAAGAACTTCCTCATTGGGTCCTGTCAGCTATGAAGTGTTTGGCAAATTGGCC
TAACTGTTCAGATTTGAAGCAGCCTATGTATTTAGGATTTGAAAAAGATGTCTTTAAAACTATA
GCCGATTACTATGGTAACTTGAAAGAGCCTCTGCTTACATTTCACCTCTTTGATGCCTTCGTCA
GTGTATTAGGTTTGTTACAGAAAGAGAAAATGGCCATTGAAGCATTTCAGATTTGCTGTCTCCT
CCTGCCCCCAGAAAATAGGAGAAAGTTACAGTTATTGATGAGAATGATGGCAAGGATCTGCTTA
AATAAGGAGATGCCACCACTGTGTGATGGCTTTGGCACCCGAACACTGATGGTTCAGACATTTT
CCCGTTGCATCTTGTGTTCCAAGGATGAAGTGGACTTGGATGACTTATTAGCTGCTAGGTTGGT
AACGTTTCTGATGGACAATTACCAAGACATTCTGAAAGTCCCTTTGGCCTTGCAGACCTCCATA
GAGGAGCGTGTGGCCCATCTACGAAGAGTCCAGATAAAATACCCAGGAGCTGATATGGATATCA
CTTTATCGGCTCCATCATTTTGCCGCCAAATTAGCCCAGAGGAATTTGAATACCAAAGAGCATA
CGGCTCTCAGGAACCCCTGGCTGCCTTGTTGGAGGAAGTCATCACAGATGCCAAACTCTCCAGC
AAAGAAAAGAAGAAAAAATTGAAGCAGTTTCAAAAATCCTATCCTGAAGTCTACCAAGAACGAT
TTCCTACACCAGAAAGTGAAGCACTTCTGTTTCCTGAAAAGTCTAAAGCAAAACCACAGCTGTT
GATGTGGGCACTAAAAAACCCCTTCCAACCATTTCAAAGAACTAGAAGTTTTCGGATGTAGTAC
TTTGATAGCTGTTAGAGACCTCTGTTGATGCTGTTGTTTTGAGTTAATGGGTGGTTGGAGGACT
ATACTGGTGGAATAAAGAAGCATGTAAGCCGCAGACTACTGAATTATAGAGATTACCTGACTTC
AAAAAATGTTGAGCCATTGTCAGTATTTTTATAAAACTCAGTGCTATTTTTAAAGTGTACAAAG
CAGTTAAAAATAAGGAGACATATATATGGTGGTAATGTTAATATGCTTGTTATAAAATTTAATG
GTCTTTTCATTTTTTTATTTGTTGTTTTTTACAGTGTTTATAAAATATTTGTGTGTACACCTGA
TTACTGATGTCTTTGTGATAACCAAGACTGAAAGATAATGTATATACTTGGATAAGAAAGACAC
TGGATACTGTTACTGTGATGCTATTGACTTAATAGCCAATTGTGATTTCTGCTGTGTAGATTGT
TTTTCCTTGTTGCACAAAGATTCTTAATGTTCTATATTACATTGGCTGTGTCTTTTATTGCAGA
TGTGTTGGATGCTCTGACAGATTTTACTTTTATGACATATATATTATAATTAAACACCACCTAA
ATGAAGTAGATTTTCATTTGCCTACACTAGTATAATTTCAGTCTTGGCTAAAGATGGAAAATGG
AACAGGATAAATTCTTGCAGTCCTGTTAGTCCTGTGATTCTAAGTGGATCTTTGTTGTTTCATG
AAAAACACAATGAGTTAAGTAAAATGAGACAACTTCCTTTATATATTTCCCTAGCTTTCTCATC
CTTTTGAAAGTAAATGGAATGTAAATAAATATCATTTTTTAAAATACCA

hide sequence

RefSeq Acc Id:

XM_013982691 ⟹ XP_013838145

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	16	39,466,505 - 39,558,750 (-)	NCBI

Sequence:

show sequence

ATATGTATCATCTCAGGAATTTTGAGGGCTTTCTAAAATGCAGCTGAGGACATACCTAAAGCAG
CAAAGGGAGGAAGAGTATTAACAGAGGGTGGGAGTCTGATCCTTTGCTCTTTCTCATGATATTG
CATCCTGAATACTCGCTCAGGTGACCAGATTTGAATTTTGAACTCTAGTAGTAGGTATAGAGTG
GTGACTTCATTTGTCCCTTTAAACAATTGCAAATTAGACAATCAATTCCTAGCGGGAAAATTCT
AAGCAGCAAAAAAAAAAGGCTCACAGCCCTGTGGCAAAAGACTGAAAATTTCAGTCCAGTCCAA
AAAAACAAAGAAAAATTCCAGGGAAAGATGAGTCTACCAAAAAAAAAAAAAAAAAAACAAAAAA
CAAAAAACCCCACAAAAAACACACAAAAAACAAACAACAACAACAACAACAAAAAACTACACAG
GAAGCTGAATCGGGCTCTTTCCCAGCTCTTTAGTGTTCTAATTCGCTGTCGACACTCCCTGTGG
CCAAGTGCTCTTATCTAGCTTTTTCAAGCGTTCCTCCATTTGAAGAGTCTGTCCACTCGCCTCA
TTTCACCACCTGCTTCTCCCAATCTCAGTTGCACCGCCAGGTTCACGGTGCACTTGGAAGGGTG
GACAGGAATTTATCTATTCAGTGCGGCTCGGCTTCGGTCACTGAATTACACAGGTCCATCGATC
CTTCGTGCGGAGACTGCCTGCGACTGGGTGCGGGGGCTCCTCCACTGTAGCTGTGAGCCTAATG
ATCGCAAGCCTGCGGGAGGTCTCCGAGGAGACGCCCACCTCCCGCTCCCTGGGTTACCGGCGGT
CCCGCCCCTCAGTTCCCGTCACGTGCCGCCGCGCCGCCCAATCAGCGCCCGAAGCGCGCACGCT
CAGGATTCAAACTGCGGCGCCTGGGGCTTTCGGGGATTCCACTTGGTGCGGCTGCAGCCCCGGC
TGCATGAGGGCCATGGAGCACCGCATCGTGGGGCCTGGGCCATACCGGGCCACCAAGCTGTGGA
ATGAGACTGTTGAGCTTTTTCGCGCTAGGATGCCATTACGGAAACATCGCTGTCGTTTCAAAAG
CTATGAACATTGCTTCACAGGGGCTGAAGCTGTGGATTGGCTGCATGAGCTGCTCAGGTGCAGC
CAAAACTTTGGCCCCGAAGTGACCCGCAAACAAACGGTCCAGCTGCTAAAAAAATTCCTGAAGA
ATCATGTTATTGAAGACATCAAGGGAAAATGGGGTCAGGAAGACTTTGAAGACAACCGTCACTT
GTACAGATTTCCTCCTTCCTCACCCCTGAAACCATACCCAAAGAGGCCCCCATATCAGAAGGAT
GTTATTAAATTTCCGGAATGGAATGATCCCCTACCAGGCACTTCACAGGAAAATATCCCGAATT
CTGAGATGTGGTACAAGCGTCACAGTATTGCTATTGGAGAGGTGCCGGCTTGCCGTCTCATCCA
CCGCAGACAGCTGACAGAGGCCAATGTGGAAGAAATATGGAAGTCTATGACATTATCATATTTA
CAGAAAGTCCTTGGCCTGGATTCCTTAGAAGAAGTTTTAGACATTAAACTCGTCAACTCCAAGT
TCATCATCCATAATGTATACAGTGTGAGCAAGCAGGGGGTTGTTATCCTTGATGACAAGTCAAA
AGAACTTCCTCATTGGGTCCTGTCAGCTATGAAGTGTTTGGCAAATTGGCCTAACTGTTCAGAT
TTGAAGCAGCCTATGTATTTAGGATTTGAAAAAGATGTCTTTAAAACTATAGCCGATTACTATG
GTAACTTGAAAGAGCCTCTGCTTACATTTCACCTCTTTGATGCCTTCGTCAGTGTATTAGGTTT
GTTACAGAAAGAGAAAATGGCCATTGAAGCATTTCAGATTTGCTGTCTCCTCCTGCCCCCAGAA
AATAGGAGAAAGTTACAGTTATTGATGAGAATGATGGCAAGGATCTGCTTAAATAAGGAGATGC
CACCACTGTGTGATGGCTTTGGCACCCGAACACTGATGGTTCAGACATTTTCCCGTTGCATCTT
GTGTTCCAAGGATGAAGTGGACTTGGATGACTTATTAGCTGCTAGGTTGGTAACGTTTCTGATG
GACAATTACCAAGACATTCTGAAAGTCCCTTTGGCCTTGCAGACCTCCATAGAGGAGCGTGTGG
CCCATCTACGAAGAGTCCAGATAAAATACCCAGGAGCTGATATGGATATCACTTTATCGGCTCC
ATCATTTTGCCGCCAAATTAGCCCAGAGGAATTTGAATACCAAAGAGCATACGGCTCTCAGGAA
CCCCTGGCTGCCTTGTTGGAGGAAGTCATCACAGATGCCAAACTCTCCAGCAAAGAAAAGAAGA
AAAAATTGAAGCAGTTTCAAAAATCCTATCCTGAAGTCTACCAAGAACGATTTCCTACACCAGA
AAGTGAAGCACTTCTGTTTCCTGAAAAGTCTAAAGCAAAACCACAGCTGTTGATGTGGGCACTA
AAAAACCCCTTCCAACCATTTCAAAGAACTAGAAGTTTTCGGATGTAGTACTTTGATAGCTGTT
AGAGACCTCTGTTGATGCTGTTGTTTTGAGTTAATGGGTGGTTGGAGGACTATACTGGTGGAAT
AAAGAAGCATGTAAGCCGCAGACTACTGAATTATAGAGATTACCTGACTTCAAAAAATGTTGAG
CCATTGTCAGTATTTTTATAAAACTCAGTGCTATTTTTAAAGTGTACAAAGCAGTTAAAAATAA
GGAGACATATATATGGTGGTAATGTTAATATGCTTGTTATAAAATTTAATGGTCTTTTCATTTT
TTTATTTGTTGTTTTTTACAGTGTTTATAAAATATTTGTGTGTACACCTGATTACTGATGTCTT
TGTGATAACCAAGACTGAAAGATAATGTATATACTTGGATAAGAAAGACACTGGATACTGTTAC
TGTGATGCTATTGACTTAATAGCCAATTGTGATTTCTGCTGTGTAGATTGTTTTTCCTTGTTGC
ACAAAGATTCTTAATGTTCTATATTACATTGGCTGTGTCTTTTATTGCAGATGTGTTGGATGCT
CTGACAGATTTTACTTTTATGACATATATATTATAATTAAACACCACCTAAATGAAGTAGATTT
TCATTTGCCTACACTAGTATAATTTCAGTCTTGGCTAAAGATGGAAAATGGAACAGGATAAATT
CTTGCAGTCCTGTTAGTCCTGTGATTCTAAGTGGATCTTTGTTGTTTCATGAAAAACACAATGA
GTTAAGTAAAATGAGACAACTTCCTTTATATATTTCCCTAGCTTTCTCATCCTTTTGAAAGTAA
ATGGAATGTAAATAAATATCATTTTTT

hide sequence

Protein Sequences


Protein RefSeqs	XP_003134035	(Get FASTA)	NCBI Sequence Viewer
	XP_013838145	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000017940.4
	ENSSSCP00000041126.2
	ENSSSCP00000054294.1
	ENSSSCP00000059406.2
	ENSSSCP00000060855
	ENSSSCP00000060855.2
	ENSSSCP00025004068.1
	ENSSSCP00030014146.1
	ENSSSCP00035033506.1
	ENSSSCP00050006295.1
	ENSSSCP00055002500.1
	ENSSSCP00065010354.1

RefSeq Acc Id:	XP_003134035 ⟸ XM_003133987
- Peptide Label:	isoform X1
- UniProtKB:	A0A8D1PER4 (UniProtKB/TrEMBL), A0A8D1XTE7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIASLREVSEETPTSRSLGYRRSRPSVPVTCRRAAQSAPEARTLRIQTAAPGAFGDSTWCGCSP GCMRAMEHRIVGPGPYRATKLWNETVELFRARMPLRKHRCRFKSYEHCFTGAEAVDWLHELLRC SQNFGPEVTRKQTVQLLKKFLKNHVIEDIKGKWGQEDFEDNRHLYRFPPSSPLKPYPKRPPYQK DVIKFPEWNDPLPGTSQENIPVRPVVMNSEMWYKRHSIAIGEVPACRLIHRRQLTEANVEEIWK SMTLSYLQKVLGLDSLEEVLDIKLVNSKFIIHNVYSVSKQGVVILDDKSKELPHWVLSAMKCLA NWPNCSDLKQPMYLGFEKDVFKTIADYYGNLKEPLLTFHLFDAFVSVLGLLQKEKMAIEAFQIC CLLLPPENRRKLQLLMRMMARICLNKEMPPLCDGFGTRTLMVQTFSRCILCSKDEVDLDDLLAA RLVTFLMDNYQDILKVPLALQTSIEERVAHLRRVQIKYPGADMDITLSAPSFCRQISPEEFEYQ RAYGSQEPLAALLEEVITDAKLSSKEKKKKLKQFQKSYPEVYQERFPTPESEALLFPEKSKAKP QLLMWALKNPFQPFQRTRSFRM hide sequence

RefSeq Acc Id:	XP_013838145 ⟸ XM_013982691
- Peptide Label:	isoform X2
- UniProtKB:	A0A8D1XTE7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIASLREVSEETPTSRSLGYRRSRPSVPVTCRRAAQSAPEARTLRIQTAAPGAFGDSTWCGCSP GCMRAMEHRIVGPGPYRATKLWNETVELFRARMPLRKHRCRFKSYEHCFTGAEAVDWLHELLRC SQNFGPEVTRKQTVQLLKKFLKNHVIEDIKGKWGQEDFEDNRHLYRFPPSSPLKPYPKRPPYQK DVIKFPEWNDPLPGTSQENIPNSEMWYKRHSIAIGEVPACRLIHRRQLTEANVEEIWKSMTLSY LQKVLGLDSLEEVLDIKLVNSKFIIHNVYSVSKQGVVILDDKSKELPHWVLSAMKCLANWPNCS DLKQPMYLGFEKDVFKTIADYYGNLKEPLLTFHLFDAFVSVLGLLQKEKMAIEAFQICCLLLPP ENRRKLQLLMRMMARICLNKEMPPLCDGFGTRTLMVQTFSRCILCSKDEVDLDDLLAARLVTFL MDNYQDILKVPLALQTSIEERVAHLRRVQIKYPGADMDITLSAPSFCRQISPEEFEYQRAYGSQ EPLAALLEEVITDAKLSSKEKKKKLKQFQKSYPEVYQERFPTPESEALLFPEKSKAKPQLLMWA LKNPFQPFQRTRSFRM hide sequence

RefSeq Acc Id:

ENSSSCP00000041126 ⟸ ENSSSCT00000050166

RefSeq Acc Id:

ENSSSCP00000052782 ⟸ ENSSSCT00000048648

RefSeq Acc Id:

ENSSSCP00000060855 ⟸ ENSSSCT00000090246

RefSeq Acc Id:

ENSSSCP00000054294 ⟸ ENSSSCT00000041441

RefSeq Acc Id:

ENSSSCP00000058995 ⟸ ENSSSCT00000062000

RefSeq Acc Id:

ENSSSCP00000062524 ⟸ ENSSSCT00000081014

RefSeq Acc Id:

ENSSSCP00000059406 ⟸ ENSSSCT00000057726

RefSeq Acc Id:

ENSSSCP00000017940 ⟸ ENSSSCT00000018439

Protein Domains

DEP Rho-GAP

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000035012	Ensembl, UniProtKB/TrEMBL
	ENSSSCG00000057381	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00025007660	UniProtKB/TrEMBL
	ENSSSCG00030022647	UniProtKB/TrEMBL
	ENSSSCG00035060441	UniProtKB/TrEMBL
	ENSSSCG00050011464	UniProtKB/TrEMBL
	ENSSSCG00055001814	UniProtKB/TrEMBL
	ENSSSCG00065019046	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000018439.5	UniProtKB/TrEMBL
	ENSSSCT00000041441.3	UniProtKB/TrEMBL
	ENSSSCT00000050166.2	UniProtKB/TrEMBL
	ENSSSCT00000057726.2	UniProtKB/TrEMBL
	ENSSSCT00000090246	ENTREZGENE
	ENSSSCT00000090246.2	UniProtKB/TrEMBL
	ENSSSCT00025010177.1	UniProtKB/TrEMBL
	ENSSSCT00030031442.1	UniProtKB/TrEMBL
	ENSSSCT00035081103.1	UniProtKB/TrEMBL
	ENSSSCT00050015415.1	UniProtKB/TrEMBL
	ENSSSCT00055003333.1	UniProtKB/TrEMBL
	ENSSSCT00065025323.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
	1.10.555.10	UniProtKB/TrEMBL
InterPro	DEP_dom	UniProtKB/TrEMBL
	ELO_CS	UniProtKB/TrEMBL
	ELO_fam	UniProtKB/TrEMBL
	ELOVL7	UniProtKB/TrEMBL
	Rho_GTPase_activation_prot	UniProtKB/TrEMBL
	RhoGAP_dom	UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
	WH_DNA-bd_sf	UniProtKB/TrEMBL
NCBI Gene	DEPDC1B	ENTREZGENE
PANTHER	DEP DOMAIN-CONTAINING	UniProtKB/TrEMBL
	DEP DOMAIN-CONTAINING PROTEIN 1B	UniProtKB/TrEMBL
	PTHR11157	UniProtKB/TrEMBL
	PTHR11157:SF118	UniProtKB/TrEMBL
Pfam	DEP	UniProtKB/TrEMBL
	ELO	UniProtKB/TrEMBL
	RhoGAP	UniProtKB/TrEMBL
PROSITE	DEP	UniProtKB/TrEMBL
	ELO	UniProtKB/TrEMBL
	RHOGAP	UniProtKB/TrEMBL
SMART	DEP	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46785	UniProtKB/TrEMBL
	SSF48350	UniProtKB/TrEMBL
UniProt	A0A287AAT3_PIG	UniProtKB/TrEMBL
	A0A287BD92_PIG	UniProtKB/TrEMBL
	A0A287BT91_PIG	UniProtKB/TrEMBL
	A0A5G2QA45_PIG	UniProtKB/TrEMBL
	A0A8D1PER4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1XTE7	ENTREZGENE, UniProtKB/TrEMBL
	F1SKW0_PIG	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

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