YJU2 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 2 | 74,509,739 - 74,528,300 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 2 | 74,507,830 - 74,528,333 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 2 | 75,001,394 - 75,022,973 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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YJU2 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 19 | 4,247,080 - 4,269,088 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 19 | 4,247,080 - 4,269,088 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 19 | 4,247,077 - 4,269,085 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 19 | 4,198,111 - 4,220,085 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 19 | 4,186,494 - 4,208,470 (+) | NCBI | | Celera | | | Cytogenetic Map | 19 | p13.3 | NCBI | | | | | HuRef | 19 | 4,010,325 - 4,032,247 (+) | NCBI | | HuRef | | | CHM1_1 | 19 | 4,246,732 - 4,268,702 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 19 | 4,229,720 - 4,252,363 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Yju2 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 17 | 56,266,187 - 56,274,951 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 17 | 56,266,099 - 56,275,285 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 17 | 55,959,187 - 55,967,951 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 17 | 55,959,099 - 55,968,285 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 17 | 56,098,610 - 56,107,374 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 17 | 55,552,467 - 55,561,574 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 17 | 59,377,714 - 59,386,478 (+) | NCBI | | Celera | | | Cytogenetic Map | 17 | D | NCBI | | | | | cM Map | 17 | 29.08 | NCBI | | | | |
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Yju2 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 9 | 876,790 - 886,687 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 9 | 789,603 - 799,505 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 9 | 789,606 - 799,496 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 9 | 1,236,798 - 1,246,612 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 9 | 6,583,974 - 6,593,798 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 9 | 5,541,835 - 5,551,650 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 9 | 11,098,914 - 11,108,806 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 9 | 11,098,924 - 11,108,741 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 9 | 10,084,078 - 10,093,964 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | Celera | 9 | 7,706,956 - 7,716,779 (-) | NCBI | | Celera | | | Cytogenetic Map | 9 | q11 | NCBI | | | | |
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Yju2 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955495 | 4,592,523 - 4,606,005 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955495 | 4,591,242 - 4,605,403 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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YJU2 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
---|
NHGRI_mPanPan1-v2 | 20 | 8,644,495 - 8,666,464 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 19 | 7,874,484 - 7,896,519 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 19 | 3,270,432 - 3,292,457 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 19 | 4,217,448 - 4,239,684 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 19 | 4,217,457 - 4,239,684 (+) | Ensembl | panpan1.1 | | panPan2 | |
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YJU2 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
CanFam3.1 | 20 | 55,367,512 - 55,380,755 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 20 | 55,368,480 - 55,380,679 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 20 | 55,095,555 - 55,108,798 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 20 | 56,026,737 - 56,039,990 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 20 | 56,026,667 - 56,039,942 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 20 | 55,086,676 - 55,099,906 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 20 | 55,567,887 - 55,581,120 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 20 | 55,766,561 - 55,779,809 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Yju2 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
HiC_Itri_2 | NW_024405118 | 215,395,972 - 215,407,869 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936588 | 2,427,126 - 2,440,939 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936588 | 2,426,786 - 2,438,811 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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YJU2 (Chlorocebus sabaeus - green monkey) |
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Yju2 (Heterocephalus glaber - naked mole-rat) |
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