RPS24 (ribosomal protein S24) - Rat Genome Database
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Gene: RPS24 (ribosomal protein S24) Sus scrofa
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Symbol: RPS24
Name: ribosomal protein S24
RGD ID: 13852392
Description: ENCODES a protein that exhibits translation initiation factor binding (ortholog); INVOLVED IN erythrocyte homeostasis (ortholog); liver regeneration (ortholog); ribosomal small subunit biogenesis (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Diamond-Blackfan anemia (ortholog); Diamond-Blackfan anemia 3 (ortholog); hypomyelinating leukodystrophy 7 with or without oligodontia and-or hypogonadotropic hypogonadism (ortholog); FOUND IN cytosol (ortholog); cytosolic ribosome (ortholog); cytosolic small ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: 40S ribosomal protein S24
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11480,473,867 - 80,480,818 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21487,005,402 - 87,012,373 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:15679890  


Genomics

Comparative Map Data
RPS24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11480,473,867 - 80,480,818 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21487,005,402 - 87,012,373 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPS24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1078,033,760 - 78,056,813 (+)EnsemblGRCh38hg38GRCh38
GRCh381078,033,863 - 78,056,806 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371079,793,621 - 79,816,564 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361079,463,580 - 79,470,480 (+)NCBINCBI36hg18NCBI36
Build 341079,463,628 - 79,470,466NCBI
Celera1073,080,118 - 73,103,169 (+)NCBI
Cytogenetic Map10q22.3NCBI
HuRef1073,788,531 - 73,811,583 (+)NCBIHuRef
CHM1_11080,076,252 - 80,099,305 (+)NCBICHM1_1
Rps24
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391424,540,746 - 24,547,028 (+)NCBIGRCm39mm39
GRCm39 Ensembl1424,537,193 - 24,547,027 (+)Ensembl
GRCm381424,490,678 - 24,496,960 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1424,487,125 - 24,496,959 (+)EnsemblGRCm38mm10GRCm38
MGSCv371425,309,903 - 25,315,368 (+)NCBIGRCm37mm9NCBIm37
MGSCv361423,323,146 - 23,328,611 (+)NCBImm8
Celera1420,865,550 - 20,871,015 (+)NCBICelera
Cytogenetic Map14A3NCBI
Rps24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21689,538 - 94,267 (+)NCBI
Rnor_6.0 Ensembl16757,403 - 762,075 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.016757,390 - 762,091 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.016752,306 - 757,005 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41643,766 - 48,353 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11643,765 - 48,353 (+)NCBI
Celera1676,361 - 80,948 (+)NCBICelera
Cytogenetic Map16p16NCBI
Rps24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543714,435,822 - 14,442,662 (-)NCBIChiLan1.0ChiLan1.0
RPS24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11077,217,260 - 77,224,186 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1077,217,228 - 77,238,519 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01074,554,301 - 74,561,240 (+)NCBIMhudiblu_PPA_v0panPan3
RPS24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl427,877,075 - 27,908,806 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1427,886,872 - 27,893,145 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rps24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365211,562,013 - 1,568,280 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS24
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1953,400,876 - 53,407,746 (-)NCBI
Rps24
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475411,218,866 - 11,225,993 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: XM_001929385   ⟹   XP_001929420
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11480,473,877 - 80,480,817 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003359244   ⟹   XP_003359292
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11480,473,879 - 80,480,817 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003359247   ⟹   XP_003359295
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11480,473,876 - 80,480,817 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005671129   ⟹   XP_005671186
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11480,473,876 - 80,480,818 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005671130   ⟹   XP_005671187
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11480,473,876 - 80,480,817 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002338693
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11480,473,867 - 80,480,817 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005671186   ⟸   XM_005671129
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003359295   ⟸   XM_003359247
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005671187   ⟸   XM_005671130
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_001929420   ⟸   XM_001929385
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_003359292   ⟸   XM_003359244
- Peptide Label: isoform X5
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000039544 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070001567 UniProtKB/TrEMBL
  ENSSSCG00070022579 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000024308 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000041630 UniProtKB/TrEMBL
  ENSSSCP00000046215 UniProtKB/TrEMBL
  ENSSSCP00000052290 UniProtKB/TrEMBL
  ENSSSCP00000062987 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000064538 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000069087 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000071513 UniProtKB/TrEMBL
  ENSSSCP00070002484 UniProtKB/TrEMBL
  ENSSSCP00070002500 UniProtKB/TrEMBL
  ENSSSCP00070002527 UniProtKB/TrEMBL
  ENSSSCP00070002531 UniProtKB/TrEMBL
  ENSSSCP00070037808 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000028532 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000036755 UniProtKB/TrEMBL
  ENSSSCT00000056750 UniProtKB/TrEMBL
  ENSSSCT00000057256 UniProtKB/TrEMBL
  ENSSSCT00000066963 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000073979 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000077730 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000086945 UniProtKB/TrEMBL
  ENSSSCT00070003019 UniProtKB/TrEMBL
  ENSSSCT00070003036 UniProtKB/TrEMBL
  ENSSSCT00070003066 UniProtKB/TrEMBL
  ENSSSCT00070003070 UniProtKB/TrEMBL
  ENSSSCT00070044878 UniProtKB/TrEMBL
InterPro Ribosomal_L23/L15e_core_dom_sf UniProtKB/TrEMBL
  Ribosomal_S24e UniProtKB/TrEMBL
  Ribosomal_S24e_CS UniProtKB/TrEMBL
KEGG Report ssc:100155012 UniProtKB/TrEMBL
NCBI Gene RPS24 ENTREZGENE
PANTHER PTHR10496 UniProtKB/TrEMBL
Pfam Ribosomal_S24e UniProtKB/TrEMBL
PROSITE RIBOSOMAL_S24E UniProtKB/TrEMBL
Superfamily-SCOP SSF54189 UniProtKB/TrEMBL
UniProt A0A287ACL6_PIG UniProtKB/TrEMBL
  A0A287AQR5_PIG UniProtKB/TrEMBL
  A0A287B7J9_PIG UniProtKB/TrEMBL
  A0A4X1SJJ2_PIG UniProtKB/TrEMBL
  A0A4X1SJK8_PIG UniProtKB/TrEMBL
  A0A4X1SK78_PIG UniProtKB/TrEMBL
  A0A4X1SK93_PIG UniProtKB/TrEMBL
  A0A4X1V4V5_PIG UniProtKB/TrEMBL
  A0A5G2QXQ1_PIG UniProtKB/TrEMBL
  A0A5G2R1Y0_PIG UniProtKB/TrEMBL
  A0A5G2RE45_PIG UniProtKB/TrEMBL
  A0A5G2RIP8_PIG UniProtKB/TrEMBL
  I3LJP6_PIG UniProtKB/TrEMBL