TUT1 (terminal uridylyl transferase 1, U6 snRNA-specific) - Rat Genome Database

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Gene: TUT1 (terminal uridylyl transferase 1, U6 snRNA-specific) Sus scrofa
Analyze
Symbol: TUT1
Name: terminal uridylyl transferase 1, U6 snRNA-specific
RGD ID: 13852119
Description: ENCODES a protein that exhibits enzyme binding (inferred); enzyme-substrate adaptor activity (inferred); metal ion binding (inferred); INVOLVED IN histone mRNA catabolic process (ortholog); ASSOCIATED WITH intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN mRNA cleavage and polyadenylation specificity factor complex (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: speckle targeted PIP5K1A-regulated poly(A) polymerase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl29,148,560 - 9,161,905 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.129,148,563 - 9,161,918 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.228,494,206 - 8,506,620 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TUT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl29,148,560 - 9,161,905 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.129,148,563 - 9,161,918 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.228,494,206 - 8,506,620 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TUT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381162,575,052 - 62,591,523 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1162,575,045 - 62,591,637 (-)EnsemblGRCh38hg38GRCh38
GRCh371162,342,524 - 62,358,995 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361162,099,096 - 62,115,592 (-)NCBINCBI36Build 36hg18NCBI36
Build 341162,099,096 - 62,115,592NCBI
Celera1159,671,911 - 59,688,674 (-)NCBICelera
Cytogenetic Map11q12.3NCBI
HuRef1158,671,464 - 58,688,025 (-)NCBIHuRef
CHM1_11162,225,562 - 62,242,155 (-)NCBICHM1_1
T2T-CHM13v2.01162,564,505 - 62,580,971 (-)NCBIT2T-CHM13v2.0
Tut1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39198,931,199 - 8,943,572 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl198,931,211 - 8,943,574 (+)EnsemblGRCm39 Ensembl
GRCm38198,953,832 - 8,966,210 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl198,953,847 - 8,966,210 (+)EnsemblGRCm38mm10GRCm38
MGSCv37199,028,340 - 9,040,700 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36199,020,892 - 9,033,255 (+)NCBIMGSCv36mm8
Celera198,714,449 - 8,726,831 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map196.04NCBI
Tut1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81215,277,802 - 215,288,869 (+)NCBIGRCr8
mRatBN7.21205,848,691 - 205,859,767 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1205,848,772 - 205,859,764 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1214,257,244 - 214,268,332 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01221,292,151 - 221,303,134 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01213,985,008 - 213,995,991 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01225,151,462 - 225,162,445 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1225,151,404 - 225,162,595 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01232,088,997 - 232,100,065 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41211,629,025 - 211,640,008 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1203,361,578 - 203,372,574 (+)NCBICelera
Cytogenetic Map1q43NCBI
Tut1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955599596,650 - 606,486 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955599596,565 - 606,498 (+)NCBIChiLan1.0ChiLan1.0
TUT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2963,801,920 - 63,819,095 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11164,844,628 - 64,861,803 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01157,932,582 - 57,949,473 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11161,287,375 - 61,303,784 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1161,287,375 - 61,303,784 (-)Ensemblpanpan1.1panPan2
TUT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11854,048,519 - 54,061,431 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1854,048,563 - 54,061,415 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1852,653,541 - 52,666,455 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01855,100,852 - 55,112,992 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1855,100,856 - 55,126,764 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11854,197,090 - 54,210,000 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01853,771,809 - 53,783,676 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01854,567,401 - 54,580,143 (+)NCBIUU_Cfam_GSD_1.0
Eef1g
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494710,566,720 - 10,577,626 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936581665,782 - 679,190 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936581665,751 - 691,448 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TUT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1111,313,208 - 11,325,912 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl111,312,843 - 11,326,777 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038108,648,848 - 108,664,259 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tut1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249261,112,309 - 1,123,959 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249261,113,331 - 1,123,930 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TUT1
429 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000014279   ⟹   ENSSSCP00000013893
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl29,148,560 - 9,161,905 (+)Ensembl
RefSeq Acc Id: XM_005660796   ⟹   XP_005660853
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.129,148,563 - 9,161,918 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005660853   ⟸   XM_005660796
- UniProtKB: A0A480XA91 (UniProtKB/TrEMBL),   A0A8D1PQJ0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000013893   ⟸   ENSSSCT00000014279
Protein Domains
PAP-associated   RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000013063 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00030011090 UniProtKB/TrEMBL
  ENSSSCG00035078822 UniProtKB/TrEMBL
  ENSSSCG00040035496 UniProtKB/TrEMBL
  ENSSSCG00045030255 UniProtKB/TrEMBL
  ENSSSCG00055004692 UniProtKB/TrEMBL
  ENSSSCG00060071319 UniProtKB/TrEMBL
  ENSSSCG00070025149 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000014279 ENTREZGENE
  ENSSSCT00000014279.5 UniProtKB/TrEMBL
  ENSSSCT00030015205.1 UniProtKB/TrEMBL
  ENSSSCT00030015209.1 UniProtKB/TrEMBL
  ENSSSCT00030015213.1 UniProtKB/TrEMBL
  ENSSSCT00035107622.1 UniProtKB/TrEMBL
  ENSSSCT00040047663.1 UniProtKB/TrEMBL
  ENSSSCT00045051565.1 UniProtKB/TrEMBL
  ENSSSCT00055009262.1 UniProtKB/TrEMBL
  ENSSSCT00060097403.1 UniProtKB/TrEMBL
  ENSSSCT00070050276.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1410.10 UniProtKB/TrEMBL
  3.30.460.10 UniProtKB/TrEMBL
  3.30.70.330 UniProtKB/TrEMBL
InterPro Matrin/U1-like-C_Znf_C2H2 UniProtKB/TrEMBL
  MTPAP-like_central UniProtKB/TrEMBL
  NT_sf UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  PAP_assoc UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  Star-PAP_RRM UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene TUT1 ENTREZGENE
PANTHER POLY A POLYMERASE CID PAP -RELATED UniProtKB/TrEMBL
  SPECKLE TARGETED PIP5K1A-REGULATED POLY(A) POLYMERASE UniProtKB/TrEMBL
Pfam MTPAP-like_central UniProtKB/TrEMBL
  PAP_assoc UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
  zf-met UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
  ZnF_U1 UniProtKB/TrEMBL
Superfamily-SCOP PAP/OAS1 substrate-binding domain UniProtKB/TrEMBL
  SSF54928 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
  SSF81301 UniProtKB/TrEMBL
UniProt A0A480XA91 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VKJ5_PIG UniProtKB/TrEMBL
  A0A8D0VJK9_PIG UniProtKB/TrEMBL
  A0A8D1BHJ6_PIG UniProtKB/TrEMBL
  A0A8D1BZG7_PIG UniProtKB/TrEMBL
  A0A8D1BZL5_PIG UniProtKB/TrEMBL
  A0A8D1PQJ0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1WNJ7_PIG UniProtKB/TrEMBL
  F1RPX0_PIG UniProtKB/TrEMBL
VGNC ID VGNC:100878 ENTREZGENE