GLG1 (golgi glycoprotein 1) - Rat Genome Database

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Gene: GLG1 (golgi glycoprotein 1) Sus scrofa
Analyze
Symbol: GLG1
Name: golgi glycoprotein 1
RGD ID: 13851303
Description: ENCODES a protein that exhibits fibroblast growth factor binding (ortholog); INVOLVED IN bone morphogenesis (ortholog); negative regulation of protein processing (ortholog); negative regulation of transforming growth factor beta receptor signaling pathway (ortholog); ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); paraplegia (ortholog); FOUND IN Golgi medial cisterna (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Golgi apparatus protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl613,011,837 - 13,164,367 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1613,011,829 - 13,165,487 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2612,976,352 - 13,131,115 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GLG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl613,011,837 - 13,164,367 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1613,011,829 - 13,165,487 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2612,976,352 - 13,131,115 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GLG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381674,447,440 - 74,607,114 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1674,447,427 - 74,607,144 (-)EnsemblGRCh38hg38GRCh38
GRCh371674,481,338 - 74,641,012 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361673,043,357 - 73,198,518 (-)NCBINCBI36Build 36hg18NCBI36
Build 341673,043,356 - 73,198,518NCBI
Celera1658,779,229 - 58,934,111 (-)NCBICelera
Cytogenetic Map16q23.1NCBI
HuRef1660,230,839 - 60,390,962 (-)NCBIHuRef
CHM1_11675,893,398 - 76,052,995 (-)NCBICHM1_1
T2T-CHM13v2.01680,494,088 - 80,653,847 (-)NCBIT2T-CHM13v2.0
Glg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398111,879,916 - 111,985,842 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8111,881,053 - 111,985,848 (-)EnsemblGRCm39 Ensembl
GRCm388111,153,284 - 111,259,210 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8111,154,421 - 111,259,216 (-)EnsemblGRCm38mm10GRCm38
MGSCv378113,681,448 - 113,783,102 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368114,044,221 - 114,145,875 (-)NCBIMGSCv36mm8
Celera8115,381,836 - 115,484,398 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map857.98NCBI
Glg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81956,034,248 - 56,133,538 (-)NCBIGRCr8
mRatBN7.21939,124,892 - 39,224,178 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1939,124,641 - 39,224,178 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1945,932,205 - 46,028,570 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01946,585,555 - 46,681,902 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01948,890,998 - 48,982,237 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01942,983,879 - 43,088,074 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1942,983,869 - 43,090,841 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01953,811,082 - 53,912,971 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41941,082,324 - 41,176,959 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11941,087,204 - 41,181,840 (-)NCBI
Celera1938,518,712 - 38,613,117 (-)NCBICelera
Cytogenetic Map19q12NCBI
Glg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554842,870,872 - 2,983,467 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554842,871,390 - 2,987,913 (+)NCBIChiLan1.0ChiLan1.0
GLG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21884,163,363 - 84,321,361 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11690,084,068 - 90,243,414 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01655,014,892 - 55,172,877 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11674,368,055 - 74,526,808 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1674,372,660 - 74,526,764 (-)Ensemblpanpan1.1panPan2
GLG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1576,020,743 - 76,171,477 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl576,020,084 - 76,167,007 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha575,996,375 - 76,144,482 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0576,457,154 - 76,605,266 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl576,377,525 - 76,603,310 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1576,280,084 - 76,427,828 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0576,103,055 - 76,251,127 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0576,595,259 - 76,743,197 (+)NCBIUU_Cfam_GSD_1.0
Glg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934936,054,412 - 36,177,920 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647523,411,188 - 23,534,724 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647523,411,194 - 23,534,692 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1553,109,745 - 53,263,878 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl553,187,919 - 53,268,693 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604715,971,875 - 16,049,084 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Glg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474612,261,589 - 12,424,723 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474612,261,577 - 12,401,671 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GLG1
7107 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000030720   ⟹   ENSSSCP00000026044
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl613,011,837 - 13,161,457 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000046392   ⟹   ENSSSCP00000049265
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl613,011,842 - 13,161,457 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000079660   ⟹   ENSSSCP00000072235
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl613,011,860 - 13,164,367 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000086233   ⟹   ENSSSCP00000073275
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl613,011,861 - 13,164,367 (+)Ensembl
RefSeq Acc Id: XM_005664351   ⟹   XP_005664408
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1613,011,829 - 13,165,487 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005664408   ⟸   XM_005664351
- UniProtKB: A0A5G2R7B7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000026044   ⟸   ENSSSCT00000030720
RefSeq Acc Id: ENSSSCP00000072235   ⟸   ENSSSCT00000079660
RefSeq Acc Id: ENSSSCP00000073275   ⟸   ENSSSCT00000086233
RefSeq Acc Id: ENSSSCP00000049265   ⟸   ENSSSCT00000046392


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000030420 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00035007512 UniProtKB/TrEMBL
  ENSSSCG00040008857 UniProtKB/TrEMBL
  ENSSSCG00045015674 UniProtKB/TrEMBL
  ENSSSCG00060001072 UniProtKB/TrEMBL
  ENSSSCG00065066916 UniProtKB/TrEMBL
  ENSSSCG00070003738 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000030720.4 UniProtKB/TrEMBL
  ENSSSCT00000046392.3 UniProtKB/TrEMBL
  ENSSSCT00000079660 ENTREZGENE
  ENSSSCT00000079660.2 UniProtKB/TrEMBL
  ENSSSCT00000086233.2 UniProtKB/TrEMBL
  ENSSSCT00035009498.1 UniProtKB/TrEMBL
  ENSSSCT00035009503.1 UniProtKB/TrEMBL
  ENSSSCT00040011759.1 UniProtKB/TrEMBL
  ENSSSCT00040011831.1 UniProtKB/TrEMBL
  ENSSSCT00040011875.1 UniProtKB/TrEMBL
  ENSSSCT00040011892.1 UniProtKB/TrEMBL
  ENSSSCT00045026869.1 UniProtKB/TrEMBL
  ENSSSCT00045027016.1 UniProtKB/TrEMBL
  ENSSSCT00045027153.1 UniProtKB/TrEMBL
  ENSSSCT00045027365.1 UniProtKB/TrEMBL
  ENSSSCT00060001326.1 UniProtKB/TrEMBL
  ENSSSCT00060001333.1 UniProtKB/TrEMBL
  ENSSSCT00060001337.1 UniProtKB/TrEMBL
  ENSSSCT00065092045.1 UniProtKB/TrEMBL
  ENSSSCT00070007066.1 UniProtKB/TrEMBL
InterPro Cys-rich_GLG1_repeat UniProtKB/TrEMBL
  Cys-rich_GLG1_repeat_euk UniProtKB/TrEMBL
  GLG1 UniProtKB/TrEMBL
KEGG Report ssc:100622584 UniProtKB/TrEMBL
NCBI Gene GLG1 ENTREZGENE
PANTHER GOLGI APPARATUS PROTEIN 1 UniProtKB/TrEMBL
  PTHR11884 UniProtKB/TrEMBL
Pfam Cys_rich_FGFR UniProtKB/TrEMBL
PROSITE GLG1_C_RICH UniProtKB/TrEMBL
Superfamily-SCOP beta-sandwich domain of Sec23/24 UniProtKB/TrEMBL
UniProt A0A287AYN4_PIG UniProtKB/TrEMBL
  A0A4X1SSI7_PIG UniProtKB/TrEMBL
  A0A5G2R7B7 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2R863_PIG UniProtKB/TrEMBL
  A0A8D0YJK6_PIG UniProtKB/TrEMBL
  A0A8D0YN83_PIG UniProtKB/TrEMBL
  A0A8D1DBD3_PIG UniProtKB/TrEMBL
  A0A8D1HH43_PIG UniProtKB/TrEMBL
  A0A8D1HKW9_PIG UniProtKB/TrEMBL
  A0A8D1HMN7_PIG UniProtKB/TrEMBL
  A0A8D1HQB3_PIG UniProtKB/TrEMBL
  A0A8D1SFF1_PIG UniProtKB/TrEMBL
  A0A8D1SNX7_PIG UniProtKB/TrEMBL
  A0A8D2CFE8_PIG UniProtKB/TrEMBL
  I3LPL7_PIG UniProtKB/TrEMBL
VGNC ID VGNC:88481 ENTREZGENE