MRPL33 (mitochondrial ribosomal protein L33) - Rat Genome Database

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Gene: MRPL33 (mitochondrial ribosomal protein L33) Sus scrofa
Analyze
Symbol: MRPL33
Name: mitochondrial ribosomal protein L33
RGD ID: 13851276
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); ASSOCIATED WITH genetic disease (ortholog); Tatton-Brown-Rahman syndrome (ortholog); FOUND IN mitochondrial large ribosomal subunit (inferred); mitochondrion (inferred); ribonucleoprotein complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 39S ribosomal protein L33, mitochondrial; 39S ribosomal protein L33, mitochondrial-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3111,428,856 - 111,438,707 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13111,428,850 - 111,438,735 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23118,590,765 - 118,600,665 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MRPL33
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3111,428,856 - 111,438,707 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13111,428,850 - 111,438,735 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23118,590,765 - 118,600,665 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MRPL33
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38227,771,719 - 27,779,733 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl227,771,717 - 27,988,087 (+)EnsemblGRCh38hg38GRCh38
GRCh37227,994,586 - 28,002,600 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36227,848,088 - 27,856,112 (+)NCBINCBI36Build 36hg18NCBI36
Build 34227,906,236 - 27,914,250NCBI
Celera227,839,861 - 27,847,885 (+)NCBICelera
Cytogenetic Map2p23.2NCBI
HuRef227,735,523 - 27,743,547 (+)NCBIHuRef
CHM1_1227,925,318 - 27,933,342 (+)NCBICHM1_1
T2T-CHM13v2.0227,814,872 - 27,822,886 (+)NCBIT2T-CHM13v2.0
Mrpl33
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39531,771,295 - 31,779,988 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl531,754,279 - 31,821,728 (+)EnsemblGRCm39 Ensembl
GRCm38531,613,951 - 31,622,644 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl531,596,935 - 31,664,384 (+)EnsemblGRCm38mm10GRCm38
MGSCv37531,916,324 - 31,925,017 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36531,890,553 - 31,899,222 (+)NCBIMGSCv36mm8
Celera529,092,660 - 29,101,355 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map517.27NCBI
Mrpl33
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8630,545,794 - 30,553,987 (-)NCBIGRCr8
mRatBN7.2624,825,800 - 24,833,994 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl624,825,827 - 24,833,834 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx625,126,652 - 25,134,845 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0625,442,543 - 25,450,736 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0624,922,959 - 24,931,163 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0626,130,278 - 26,138,498 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl626,130,488 - 26,138,414 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0635,954,535 - 35,962,732 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4624,870,269 - 24,878,462 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera624,320,011 - 24,328,232 (-)NCBICelera
Cytogenetic Map6q14NCBI
Mrpl33
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554699,720,791 - 9,731,711 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554699,721,710 - 9,731,608 (+)NCBIChiLan1.0ChiLan1.0
MRPL33
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21298,736,781 - 98,744,879 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A98,740,751 - 98,748,849 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A27,769,235 - 27,777,327 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A27,853,970 - 27,861,994 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A27,853,970 - 27,861,994 (+)Ensemblpanpan1.1panPan2
LOC102155220
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11853,341,194 - 53,341,567 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1851,948,572 - 51,948,962 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01854,386,653 - 54,387,043 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11853,488,550 - 53,488,940 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01853,063,790 - 53,064,164 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01853,849,728 - 53,850,118 (-)NCBIUU_Cfam_GSD_1.0
Mrpl33
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629265,975,564 - 66,001,632 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364934,855,051 - 4,863,959 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364934,855,051 - 4,863,966 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPL33
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11479,848,843 - 79,858,323 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604532,291,935 - 32,301,896 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrpl33
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247389,791,234 - 9,803,802 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247389,791,212 - 9,812,291 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MRPL33
388 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 22 2 3 3
Low 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000042508   ⟹   ENSSSCP00000034999
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl3111,428,856 - 111,438,707 (-)Ensembl
RefSeq Acc Id: XM_003125284   ⟹   XP_003125332
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.13111,428,850 - 111,438,735 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003125332   ⟸   XM_003125284
- UniProtKB: A0A286ZU68 (UniProtKB/TrEMBL),   A0A4X1TLP9 (UniProtKB/TrEMBL),   A0A8D0V259 (UniProtKB/TrEMBL),   A0A8D1FGP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000034999   ⟸   ENSSSCT00000042508


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000034129 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005044726 UniProtKB/TrEMBL
  ENSSSCG00015073299 UniProtKB/TrEMBL
  ENSSSCG00025076038 UniProtKB/TrEMBL
  ENSSSCG00030031113 UniProtKB/TrEMBL
  ENSSSCG00035079053 UniProtKB/TrEMBL
  ENSSSCG00040063046 UniProtKB/TrEMBL
  ENSSSCG00045002808 UniProtKB/TrEMBL
  ENSSSCG00050047601 UniProtKB/TrEMBL
  ENSSSCG00055027754 UniProtKB/TrEMBL
  ENSSSCG00060061406 UniProtKB/TrEMBL
  ENSSSCG00065011353 UniProtKB/TrEMBL
  ENSSSCG00070009942 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000042508 ENTREZGENE
  ENSSSCT00000042508.1 UniProtKB/TrEMBL
  ENSSSCT00005072070.1 UniProtKB/TrEMBL
  ENSSSCT00015098567.1 UniProtKB/TrEMBL
  ENSSSCT00015098661.1 UniProtKB/TrEMBL
  ENSSSCT00025105120.1 UniProtKB/TrEMBL
  ENSSSCT00025105137.1 UniProtKB/TrEMBL
  ENSSSCT00030043164.1 UniProtKB/TrEMBL
  ENSSSCT00030043196.1 UniProtKB/TrEMBL
  ENSSSCT00035107996.1 UniProtKB/TrEMBL
  ENSSSCT00035108032.1 UniProtKB/TrEMBL
  ENSSSCT00040085971.1 UniProtKB/TrEMBL
  ENSSSCT00040086040.1 UniProtKB/TrEMBL
  ENSSSCT00045004422.1 UniProtKB/TrEMBL
  ENSSSCT00045004432.1 UniProtKB/TrEMBL
  ENSSSCT00050064838.1 UniProtKB/TrEMBL
  ENSSSCT00055054983.1 UniProtKB/TrEMBL
  ENSSSCT00060083807.1 UniProtKB/TrEMBL
  ENSSSCT00060083827.1 UniProtKB/TrEMBL
  ENSSSCT00065015097.1 UniProtKB/TrEMBL
  ENSSSCT00070019310.1 UniProtKB/TrEMBL
Gene3D-CATH 2.20.28.120 UniProtKB/TrEMBL
InterPro L33_sf UniProtKB/TrEMBL
  Ribosomal_L33 UniProtKB/TrEMBL
  Ribosomal_zn-bd UniProtKB/TrEMBL
KEGG Report ssc:100520487 UniProtKB/TrEMBL
NCBI Gene MRPL33 ENTREZGENE
PANTHER 39S RIBOSOMAL PROTEIN L33, MITOCHONDRIAL UniProtKB/TrEMBL
  39S RIBOSOMAL PROTEIN L33, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam Ribosomal_L33 UniProtKB/TrEMBL
Superfamily-SCOP SSF57829 UniProtKB/TrEMBL
UniProt A0A286ZU68 ENTREZGENE
  A0A4X1TLP9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0PY87_PIG UniProtKB/TrEMBL
  A0A8D0V259 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1FGP6 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A286ZU68 UniProtKB/TrEMBL
VGNC ID VGNC:103994 ENTREZGENE