CCDC87 (coiled-coil domain containing 87) - Rat Genome Database

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Gene: CCDC87 (coiled-coil domain containing 87) Sus scrofa
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Symbol: CCDC87
Name: coiled-coil domain containing 87
RGD ID: 13846782
Description: INVOLVED IN positive regulation of acrosome reaction (inferred); positive regulation of fertilization (inferred); ASSOCIATED WITH familial temporal lobe epilepsy 8 (ortholog); intellectual disability (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: coiled-coil domain-containing protein 87
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl25,833,464 - 5,836,686 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.125,833,431 - 5,838,922 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.224,863,943 - 4,867,188 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics

Comparative Map Data
CCDC87
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl25,833,464 - 5,836,686 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.125,833,431 - 5,838,922 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.224,863,943 - 4,867,188 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC87
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1166,590,176 - 66,593,063 (-)EnsemblGRCh38hg38GRCh38
GRCh381166,590,176 - 66,593,063 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371166,357,647 - 66,360,534 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361166,114,216 - 66,117,130 (-)NCBINCBI36hg18NCBI36
Cytogenetic Map11q13.2NCBI
HuRef1162,685,282 - 62,688,197 (-)NCBIHuRef
CHM1_11166,241,371 - 66,244,285 (-)NCBICHM1_1
Ccdc87
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39194,889,394 - 4,892,556 (+)NCBIGRCm39mm39
GRCm39 Ensembl194,889,394 - 4,892,556 (+)Ensembl
GRCm38194,839,366 - 4,842,528 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl194,839,366 - 4,842,528 (+)EnsemblGRCm38mm10GRCm38
MGSCv37194,839,366 - 4,842,528 (+)NCBIGRCm37mm9NCBIm37
MGSCv36194,839,415 - 4,842,163 (+)NCBImm8
Celera194,710,421 - 4,713,583 (+)NCBICelera
Cytogenetic Map19ANCBI
Ccdc87
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21202,135,021 - 202,137,717 (+)NCBI
Rnor_6.0 Ensembl1220,096,422 - 220,099,611 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01220,096,478 - 220,099,174 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01227,027,475 - 227,030,171 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41207,451,155 - 207,453,851 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1199,675,524 - 199,678,217 (+)NCBICelera
Cytogenetic Map1q43NCBI
Ccdc87
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542218,772,869 - 18,775,548 (+)NCBIChiLan1.0ChiLan1.0
CCDC87
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11165,270,801 - 65,273,720 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01161,946,954 - 61,949,840 (-)NCBIMhudiblu_PPA_v0panPan3
CCDC87
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11850,759,378 - 50,762,205 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1850,759,436 - 50,762,057 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,368,112 - 49,370,929 (+)NCBI
ROS_Cfam_1.01851,790,913 - 51,793,730 (+)NCBI
UMICH_Zoey_3.11850,892,297 - 50,895,114 (+)NCBI
UNSW_CanFamBas_1.01850,472,130 - 50,474,948 (+)NCBI
UU_Cfam_GSD_1.01851,261,982 - 51,264,800 (+)NCBI
Ccdc87
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049476,562,699 - 6,565,919 (+)NCBI
SpeTri2.0NW_0049365993,005,067 - 3,008,053 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC87
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.117,686,514 - 7,689,390 (+)NCBI
ChlSab1.1 Ensembl17,686,575 - 7,689,061 (+)Ensembl
Vero_WHO_p1.0NW_023666038104,970,062 - 104,972,985 (+)NCBI
Ccdc87
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476719,815,664 - 19,818,796 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system nervous system renal system reproductive system respiratory system
High
Medium
Low 1 13 1
Below cutoff 7 1 2 4 9 1 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000014138   ⟹   ENSSSCP00000013752
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl25,833,464 - 5,836,686 (+)Ensembl
RefSeq Acc Id: XM_003480670   ⟹   XP_003480718
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.125,833,431 - 5,838,922 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003480718 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003480718   ⟸   XM_003480670
- Sequence:
RefSeq Acc Id: ENSSSCP00000013752   ⟸   ENSSSCT00000014138


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000012933 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000013752 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000014138 ENTREZGENE, UniProtKB/TrEMBL
InterPro CCDC87 UniProtKB/TrEMBL
NCBI Gene CCDC87 ENTREZGENE
PANTHER PTHR16078 UniProtKB/TrEMBL
UniProt F1RUT6_PIG UniProtKB/TrEMBL
VGNC ID VGNC:86324 ENTREZGENE