FUT1 (fucosyltransferase 1 (H blood group)) - Rat Genome Database

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Gene: FUT1 (fucosyltransferase 1 (H blood group)) Sus scrofa
Analyze
Symbol: FUT1
Name: fucosyltransferase 1 (H blood group)
RGD ID: 13845397
Description: ENCODES a protein that exhibits alpha-(1,2)-fucosyltransferase activity (ortholog); INVOLVED IN fucosylation (ortholog); olfactory bulb development (ortholog); positive regulation of cell-matrix adhesion (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: alpha(1,2)FT 1; alpha-1,2-fucosyltransferase; alpha-1-fucosyltransferase; galactoside 2-alpha-L-fucosyltransferase 1; galactoside alpha-(1,2)-fucosyltransferase 1; GDP-L-fucose:beta-D-galactoside 2-alpha-L-fucosyltransferase 1; type 1 galactoside alpha-(1,2)-fucosyltransferase FUT1; type 2 galactoside alpha-(1,2)-fucosyltransferase FUT1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,077,431 - 54,080,514 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,077,431 - 54,080,475 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2649,824,781 - 49,828,501 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap6q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:8613146   PMID:9321466   PMID:11132149   PMID:12672664   PMID:16130473   PMID:17284424   PMID:17855256   PMID:19134079   PMID:21691705   PMID:21695432   PMID:21769474   PMID:21869481  
PMID:22301074   PMID:23777352   PMID:24336113   PMID:25318177   PMID:26985939   PMID:30032202   PMID:30734380   PMID:32311589  


Genomics

Comparative Map Data
FUT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,077,431 - 54,080,514 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,077,431 - 54,080,475 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2649,824,781 - 49,828,501 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap6q11NCBI
FUT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381948,748,011 - 48,755,358 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1948,748,011 - 48,755,390 (-)EnsemblGRCh38hg38GRCh38
GRCh371949,251,268 - 49,258,615 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361953,943,080 - 53,950,459 (-)NCBINCBI36Build 36hg18NCBI36
Build 341953,943,081 - 53,950,459NCBI
Celera1946,117,360 - 46,124,739 (-)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1945,630,081 - 45,637,494 (-)NCBIHuRef
CHM1_11949,253,039 - 49,260,418 (-)NCBICHM1_1
T2T-CHM13v2.01951,742,440 - 51,749,823 (-)NCBIT2T-CHM13v2.0
Fut1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39745,266,862 - 45,270,483 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl745,266,713 - 45,270,483 (+)EnsemblGRCm39 Ensembl
GRCm38745,617,606 - 45,621,059 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,617,289 - 45,621,059 (+)EnsemblGRCm38mm10GRCm38
MGSCv37752,872,976 - 52,876,427 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36745,485,648 - 45,489,101 (+)NCBIMGSCv36mm8
Celera741,079,136 - 41,082,597 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.39NCBI
Fut1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81105,223,399 - 105,226,817 (+)NCBIGRCr8
mRatBN7.2196,086,934 - 96,090,352 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl196,086,635 - 96,090,616 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1101,472,369 - 101,475,787 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01109,945,066 - 109,948,484 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01103,235,443 - 103,238,861 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01101,599,018 - 101,602,440 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,599,018 - 101,602,436 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,677,798 - 102,681,216 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4196,085,914 - 96,089,332 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1196,164,024 - 96,167,443 (+)NCBI
Celera190,340,591 - 90,344,009 (+)NCBICelera
Cytogenetic Map1q22NCBI
Fut1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,823,049 - 1,823,965 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,822,412 - 1,824,184 (+)NCBIChiLan1.0ChiLan1.0
FUT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22054,850,670 - 54,858,260 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11956,777,510 - 56,784,192 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01945,747,261 - 45,753,436 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11954,338,640 - 54,344,491 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1954,340,782 - 54,341,882 (-)Ensemblpanpan1.1panPan2
FUT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,575,011 - 107,577,427 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,575,782 - 107,576,879 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1107,097,461 - 107,100,650 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01108,099,673 - 108,102,879 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11107,766,533 - 107,769,722 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01107,413,421 - 107,416,610 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01108,249,028 - 108,252,217 (+)NCBIUU_Cfam_GSD_1.0
Fut1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,204,779 - 21,207,245 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366642,822,972 - 2,824,108 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366642,822,972 - 2,824,331 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FUT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1642,000,124 - 42,003,460 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl642,000,744 - 42,001,841 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607321,869,417 - 21,876,073 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fut1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248325,168,170 - 5,171,176 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FUT1
29 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2
Low 8 4 3 5 2 23 2 3 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000051297   ⟹   ENSSSCP00000062180
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl654,077,431 - 54,080,514 (-)Ensembl
RefSeq Acc Id: NM_214068   ⟹   NP_999233
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1654,077,431 - 54,080,475 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_999233 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB02984 (Get FASTA)   NCBI Sequence Viewer  
  AAB81884 (Get FASTA)   NCBI Sequence Viewer  
  AAF59833 (Get FASTA)   NCBI Sequence Viewer  
  AMZ03358 (Get FASTA)   NCBI Sequence Viewer  
  CCP50153 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000062180.1
  ENSSSCP00005016198.1
  ENSSSCP00005016210.1
  ENSSSCP00015014100.1
  ENSSSCP00015014134.1
  ENSSSCP00015014142.1
  ENSSSCP00015014146.1
  ENSSSCP00015014160.1
  ENSSSCP00025010233.1
  ENSSSCP00025010241.1
  ENSSSCP00025010247.1
  ENSSSCP00025010250.1
  ENSSSCP00025010254.1
  ENSSSCP00030032953.1
  ENSSSCP00030032963.1
  ENSSSCP00030032970.1
  ENSSSCP00030032977.1
  ENSSSCP00035024623.1
  ENSSSCP00035024627.1
  ENSSSCP00035024628.1
  ENSSSCP00035024630.1
  ENSSSCP00040003062.1
  ENSSSCP00040003064.1
  ENSSSCP00040003066.1
  ENSSSCP00040003071.1
  ENSSSCP00045019943.1
  ENSSSCP00045019966.1
  ENSSSCP00045019987.1
  ENSSSCP00045020016.1
  ENSSSCP00050045628.1
  ENSSSCP00050045630.1
  ENSSSCP00050045632.1
  ENSSSCP00050045634.1
  ENSSSCP00055046377.1
  ENSSSCP00055046385.1
  ENSSSCP00055046390.1
  ENSSSCP00055046405.1
  ENSSSCP00060044514.1
  ENSSSCP00060044523.1
  ENSSSCP00060044526.1
  ENSSSCP00060044581.1
  ENSSSCP00065027391.1
  ENSSSCP00065027392.1
  ENSSSCP00065027395.1
  ENSSSCP00065027401.1
  ENSSSCP00070047459.1
GenBank Protein Q29043 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_999233   ⟸   NM_214068
- UniProtKB: O19101 (UniProtKB/Swiss-Prot),   Q29043 (UniProtKB/Swiss-Prot),   A0A8D1D8K9 (UniProtKB/TrEMBL),   A0A8D1YVN1 (UniProtKB/TrEMBL),   A0A8D1WU54 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000062180   ⟸   ENSSSCT00000051297


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000038580 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00005016939 UniProtKB/TrEMBL
  ENSSSCG00015026684 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00025017841 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00030051888 UniProtKB/TrEMBL
  ENSSSCG00035046000 UniProtKB/TrEMBL
  ENSSSCG00040005864 UniProtKB/TrEMBL
  ENSSSCG00045016950 UniProtKB/TrEMBL
  ENSSSCG00050075900 UniProtKB/TrEMBL
  ENSSSCG00055029203 UniProtKB/TrEMBL
  ENSSSCG00060074752 UniProtKB/TrEMBL
  ENSSSCG00065046245 UniProtKB/TrEMBL
  ENSSSCG00070027846 UniProtKB/Swiss-Prot
Ensembl Transcript ENSSSCT00000051297.2 UniProtKB/TrEMBL
  ENSSSCT00005026663.1 UniProtKB/TrEMBL
  ENSSSCT00005026684.1 UniProtKB/TrEMBL
  ENSSSCT00015035435.1 UniProtKB/Swiss-Prot
  ENSSSCT00015035526.1 UniProtKB/TrEMBL
  ENSSSCT00015035542.1 UniProtKB/Swiss-Prot
  ENSSSCT00015035552.1 UniProtKB/Swiss-Prot
  ENSSSCT00015035584.1 UniProtKB/Swiss-Prot
  ENSSSCT00025024193.1 UniProtKB/Swiss-Prot
  ENSSSCT00025024203.1 UniProtKB/Swiss-Prot
  ENSSSCT00025024218.1 UniProtKB/Swiss-Prot
  ENSSSCT00025024229.1 UniProtKB/TrEMBL
  ENSSSCT00025024242.1 UniProtKB/Swiss-Prot
  ENSSSCT00030072273.1 UniProtKB/TrEMBL
  ENSSSCT00030072292.1 UniProtKB/TrEMBL
  ENSSSCT00030072301.1 UniProtKB/TrEMBL
  ENSSSCT00030072311.1 UniProtKB/TrEMBL
  ENSSSCT00035061154.1 UniProtKB/TrEMBL
  ENSSSCT00035061161.1 UniProtKB/TrEMBL
  ENSSSCT00035061162.1 UniProtKB/TrEMBL
  ENSSSCT00035061166.1 UniProtKB/TrEMBL
  ENSSSCT00040007742.1 UniProtKB/TrEMBL
  ENSSSCT00040007748.1 UniProtKB/TrEMBL
  ENSSSCT00040007754.1 UniProtKB/TrEMBL
  ENSSSCT00040007769.1 UniProtKB/TrEMBL
  ENSSSCT00045028813.1 UniProtKB/TrEMBL
  ENSSSCT00045028844.1 UniProtKB/TrEMBL
  ENSSSCT00045028868.1 UniProtKB/TrEMBL
  ENSSSCT00045028907.1 UniProtKB/TrEMBL
  ENSSSCT00050104151.1 UniProtKB/TrEMBL
  ENSSSCT00050104153.1 UniProtKB/TrEMBL
  ENSSSCT00050104157.1 UniProtKB/TrEMBL
  ENSSSCT00050104162.1 UniProtKB/TrEMBL
  ENSSSCT00055057970.1 UniProtKB/TrEMBL
  ENSSSCT00055057982.1 UniProtKB/TrEMBL
  ENSSSCT00055057987.1 UniProtKB/TrEMBL
  ENSSSCT00055058004.1 UniProtKB/TrEMBL
  ENSSSCT00060102263.1 UniProtKB/TrEMBL
  ENSSSCT00060102276.1 UniProtKB/TrEMBL
  ENSSSCT00060102280.1 UniProtKB/TrEMBL
  ENSSSCT00060102356.1 UniProtKB/TrEMBL
  ENSSSCT00065063248.1 UniProtKB/TrEMBL
  ENSSSCT00065063250.1 UniProtKB/TrEMBL
  ENSSSCT00065063254.1 UniProtKB/TrEMBL
  ENSSSCT00065063261.1 UniProtKB/TrEMBL
  ENSSSCT00070055868.1 UniProtKB/Swiss-Prot
InterPro Glyco_trans_11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:397138 UniProtKB/Swiss-Prot
NCBI Gene FUT1 ENTREZGENE
PANTHER GALACTOSIDE ALPHA-(1,2)-FUCOSYLTRANSFERASE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11927 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Glyco_transf_11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A5G2QJG4_PIG UniProtKB/TrEMBL
  A0A8D0LKW0_PIG UniProtKB/TrEMBL
  A0A8D0N7N8_PIG UniProtKB/TrEMBL
  A0A8D0UKB2_PIG UniProtKB/TrEMBL
  A0A8D1D8K9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1WU54 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1YVN1 ENTREZGENE, UniProtKB/TrEMBL
  FUT1_PIG UniProtKB/Swiss-Prot
  M1XGB3_PIG UniProtKB/TrEMBL
  O19101 ENTREZGENE
  Q29043 ENTREZGENE
UniProt Secondary O19101 UniProtKB/Swiss-Prot