CHP1 (calcineurin like EF-hand protein 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: CHP1 (calcineurin like EF-hand protein 1) Sus scrofa
Analyze
Symbol: CHP1
Name: calcineurin like EF-hand protein 1
RGD ID: 13844567
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); kinase binding (ortholog); microtubule binding (ortholog); INVOLVED IN cytoplasmic microtubule organization (ortholog); membrane docking (ortholog); membrane fusion (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colon cancer (ortholog); Spastic Ataxia 9, Autosomal Recessive (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: calcineurin B homologous protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1130,073,919 - 130,112,753 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11130,073,919 - 130,112,461 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21145,221,139 - 145,259,701 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463  


Genomics

Comparative Map Data
CHP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1130,073,919 - 130,112,753 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11130,073,919 - 130,112,461 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21145,221,139 - 145,259,701 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1541,230,839 - 41,281,887 (+)EnsemblGRCh38hg38GRCh38
GRCh381541,231,156 - 41,281,887 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371541,523,466 - 41,574,085 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361539,310,729 - 39,361,377 (+)NCBINCBI36hg18NCBI36
Build 341539,310,728 - 39,361,373NCBI
Celera1518,291,415 - 18,342,063 (+)NCBI
Cytogenetic Map15q15.1NCBI
HuRef1518,371,799 - 18,422,604 (+)NCBIHuRef
CHM1_11541,641,426 - 41,692,297 (+)NCBICHM1_1
Chp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392119,378,172 - 119,417,505 (+)NCBIGRCm39mm39
GRCm39 Ensembl2119,378,178 - 119,417,508 (+)Ensembl
GRCm382119,547,707 - 119,587,024 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2119,547,697 - 119,587,027 (+)EnsemblGRCm38mm10GRCm38
MGSCv372119,373,443 - 119,412,760 (+)NCBIGRCm37mm9NCBIm37
MGSCv362119,239,155 - 119,278,461 (+)NCBImm8
Celera2120,700,969 - 120,740,985 (+)NCBICelera
Cytogenetic Map2E5NCBI
Chp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23106,536,009 - 106,571,255 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl3106,536,004 - 106,571,251 (+)Ensembl
Rnor_6.03111,354,506 - 111,389,998 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3111,354,506 - 111,389,989 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03117,902,988 - 117,938,480 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43106,066,389 - 106,101,635 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13105,962,816 - 105,998,059 (+)NCBI
Celera3105,447,792 - 105,483,065 (+)NCBICelera
Cytogenetic Map3q35NCBI
Chp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554168,090,034 - 8,132,870 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554168,090,034 - 8,131,605 (+)NCBIChiLan1.0ChiLan1.0
CHP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11538,418,815 - 38,466,925 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1538,418,815 - 38,467,681 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01520,172,874 - 20,223,382 (+)NCBIMhudiblu_PPA_v0panPan3
CHP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1308,304,939 - 8,352,833 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl308,305,007 - 8,350,904 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha308,363,447 - 8,409,616 (+)NCBI
ROS_Cfam_1.0308,438,344 - 8,484,537 (+)NCBI
UMICH_Zoey_3.1308,359,874 - 8,408,027 (+)NCBI
UNSW_CanFamBas_1.0308,467,375 - 8,515,299 (+)NCBI
UU_Cfam_GSD_1.0308,598,734 - 8,645,069 (+)NCBI
Chp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864086,763,916 - 86,812,248 (+)NCBI
SpeTri2.0NW_0049364714,611,980 - 4,660,320 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12641,734,698 - 41,785,273 (-)NCBI
ChlSab1.1 Ensembl2641,733,063 - 41,785,586 (-)Ensembl
Vero_WHO_p1.0NW_02366604899,207,184 - 99,258,544 (+)NCBI
Chp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248048,431,999 - 8,474,458 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 8 2 3 5 22 2 3 3
Low 2 2 2 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000005250   ⟹   ENSSSCP00000005123
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1130,073,919 - 130,112,753 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000044283   ⟹   ENSSSCP00000054689
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1130,075,456 - 130,112,466 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000074266   ⟹   ENSSSCP00000074046
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1130,075,841 - 130,112,753 (-)Ensembl
RefSeq Acc Id: XM_013993169   ⟹   XP_013848623
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11130,073,919 - 130,112,461 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013848623 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013848623   ⟸   XM_013993169
- UniProtKB: F1SSV2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000074046   ⟸   ENSSSCT00000074266
RefSeq Acc Id: ENSSSCP00000054689   ⟸   ENSSSCT00000044283
RefSeq Acc Id: ENSSSCP00000005123   ⟸   ENSSSCT00000005250
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004751 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070019871 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000005123 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000054689 UniProtKB/TrEMBL
  ENSSSCP00000074046 UniProtKB/TrEMBL
  ENSSSCP00070033002 UniProtKB/TrEMBL
  ENSSSCP00070033008 UniProtKB/TrEMBL
  ENSSSCP00070033012 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000005250 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000044283 UniProtKB/TrEMBL
  ENSSSCT00000074266 UniProtKB/TrEMBL
  ENSSSCT00070039398 UniProtKB/TrEMBL
  ENSSSCT00070039404 UniProtKB/TrEMBL
  ENSSSCT00070039408 UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
KEGG Report ssc:100621371 UniProtKB/TrEMBL
NCBI Gene CHP1 ENTREZGENE
Pfam EF-hand_6 UniProtKB/TrEMBL
  EF-hand_7 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A287BF35_PIG UniProtKB/TrEMBL
  A0A4X1UW85_PIG UniProtKB/TrEMBL
  A0A4X1UW95_PIG UniProtKB/TrEMBL
  A0A5G2RCD1_PIG UniProtKB/TrEMBL
  F1SSV2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:86657 ENTREZGENE