PIGP (phosphatidylinositol glycan anchor biosynthesis class P) - Rat Genome Database

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Gene: PIGP (phosphatidylinositol glycan anchor biosynthesis class P) Sus scrofa
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Symbol: PIGP
Name: phosphatidylinositol glycan anchor biosynthesis class P
RGD ID: 13844546
Description: ENCODES a protein that exhibits phosphatidylinositol N-acetylglucosaminyltransferase activity (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: phosphatidylinositol N-acetylglucosaminyltransferase subunit P
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13200,686,666 - 200,695,320 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113200,686,716 - 200,695,537 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213210,760,413 - 210,769,136 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:12226715   PMID:14681463   PMID:17145712   PMID:17407547   PMID:22301074  


Genomics

Comparative Map Data
PIGP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13200,686,666 - 200,695,320 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113200,686,716 - 200,695,537 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213210,760,413 - 210,769,136 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PIGP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382137,065,364 - 37,073,071 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2137,062,846 - 37,073,170 (-)EnsemblGRCh38hg38GRCh38
GRCh372138,437,664 - 38,445,371 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362137,359,534 - 37,367,328 (-)NCBINCBI36Build 36hg18NCBI36
Build 342137,359,546 - 37,367,264NCBI
Celera2123,636,029 - 23,643,823 (-)NCBICelera
Cytogenetic Map21q22.13NCBI
HuRef2123,913,288 - 23,921,071 (-)NCBIHuRef
CHM1_12137,999,410 - 38,007,205 (-)NCBICHM1_1
T2T-CHM13v2.02135,447,555 - 35,455,253 (-)NCBIT2T-CHM13v2.0
Pigp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391694,159,622 - 94,171,874 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1694,159,622 - 94,172,701 (-)EnsemblGRCm39 Ensembl
GRCm381694,358,763 - 94,371,015 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1694,358,763 - 94,371,842 (-)EnsemblGRCm38mm10GRCm38
MGSCv371694,580,370 - 94,592,622 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361694,473,245 - 94,479,813 (-)NCBIMGSCv36mm8
Celera1695,445,967 - 95,458,206 (-)NCBICelera
Cytogenetic Map16C4NCBI
cM Map1655.18NCBI
Pigp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81147,152,601 - 47,158,766 (-)NCBIGRCr8
mRatBN7.21133,682,943 - 33,689,111 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1133,682,948 - 33,689,321 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1142,337,970 - 42,344,129 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01135,009,338 - 35,015,497 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01134,157,517 - 34,163,682 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01134,592,128 - 34,598,253 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1134,592,121 - 34,598,275 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01138,179,876 - 38,186,002 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41134,610,876 - 34,617,001 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11134,666,936 - 34,672,737 (-)NCBI
Celera1134,760,717 - 34,766,841 (+)NCBICelera
Cytogenetic Map11q11NCBI
Pigp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540736,178,323 - 36,185,317 (-)NCBIChiLan1.0ChiLan1.0
PIGP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22233,176,303 - 33,185,563 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12128,036,496 - 28,045,755 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02123,427,190 - 23,435,170 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12136,781,890 - 36,789,844 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2136,781,890 - 36,789,748 (-)Ensemblpanpan1.1panPan2
PIGP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13132,222,284 - 32,230,633 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3132,220,152 - 32,230,656 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3131,282,953 - 31,292,422 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03131,524,882 - 31,534,157 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3131,522,483 - 31,533,793 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13131,392,816 - 31,402,103 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03131,405,905 - 31,415,164 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03131,896,193 - 31,905,666 (-)NCBIUU_Cfam_GSD_1.0
Pigp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497131,735,742 - 31,743,676 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365005,724,202 - 5,731,885 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365005,724,178 - 5,732,081 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIGP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1281,026,551 - 81,048,686 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl281,040,993 - 81,048,661 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660548,859,172 - 8,894,224 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pigp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474526,566,046 - 26,576,635 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PIGP
392 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 7 1 3 2 2 21 2 2
Low 3 3 3 2 1 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000044360   ⟹   ENSSSCP00000049910
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl13200,686,666 - 200,695,320 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000085110   ⟹   ENSSSCP00000070690
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl13200,686,666 - 200,694,465 (-)Ensembl
RefSeq Acc Id: NM_001243520   ⟹   NP_001230449
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.113200,686,722 - 200,695,310 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001243521   ⟹   NP_001230450
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.113200,686,722 - 200,695,048 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001243522   ⟹   NP_001230451
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.113200,686,722 - 200,695,430 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021068231   ⟹   XP_020923890
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.113200,686,716 - 200,695,537 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020923890   ⟸   XM_021068231
- Peptide Label: isoform X1
- UniProtKB: A0A287B1D6 (UniProtKB/TrEMBL),   A0A4X1TPU0 (UniProtKB/TrEMBL),   A0A8D0MJD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001230451   ⟸   NM_001243522
- UniProtKB: A0A287B1D6 (UniProtKB/TrEMBL),   A0A4X1TPU0 (UniProtKB/TrEMBL),   A0A8D0MJD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001230449   ⟸   NM_001243520
- UniProtKB: A0A287B1D6 (UniProtKB/TrEMBL),   A0A4X1TPU0 (UniProtKB/TrEMBL),   A0A8D0MJD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001230450   ⟸   NM_001243521
- UniProtKB: A0A287B1D6 (UniProtKB/TrEMBL),   A0A4X1TPU0 (UniProtKB/TrEMBL),   A0A8D0MJD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000070690   ⟸   ENSSSCT00000085110
RefSeq Acc Id: ENSSSCP00000049910   ⟸   ENSSSCT00000044360
Protein Domains
PIG-P


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000012061 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005002144 UniProtKB/TrEMBL
  ENSSSCG00015008660 UniProtKB/TrEMBL
  ENSSSCG00025002593 UniProtKB/TrEMBL
  ENSSSCG00030038630 UniProtKB/TrEMBL
  ENSSSCG00035069741 UniProtKB/TrEMBL
  ENSSSCG00040075485 UniProtKB/TrEMBL
  ENSSSCG00045018378 UniProtKB/TrEMBL
  ENSSSCG00050047722 UniProtKB/TrEMBL
  ENSSSCG00055025481 UniProtKB/TrEMBL
  ENSSSCG00060018626 UniProtKB/TrEMBL
  ENSSSCG00065066256 UniProtKB/TrEMBL
  ENSSSCG00070011278 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000044360 ENTREZGENE
  ENSSSCT00000044360.1 UniProtKB/TrEMBL
  ENSSSCT00000085110.1 UniProtKB/TrEMBL
  ENSSSCT00005003297.1 UniProtKB/TrEMBL
  ENSSSCT00005003309.1 UniProtKB/TrEMBL
  ENSSSCT00005003332.1 UniProtKB/TrEMBL
  ENSSSCT00015011462.1 UniProtKB/TrEMBL
  ENSSSCT00025003415.1 UniProtKB/TrEMBL
  ENSSSCT00025003433.1 UniProtKB/TrEMBL
  ENSSSCT00025003448.1 UniProtKB/TrEMBL
  ENSSSCT00030053800.1 UniProtKB/TrEMBL
  ENSSSCT00030053815.1 UniProtKB/TrEMBL
  ENSSSCT00035094267.1 UniProtKB/TrEMBL
  ENSSSCT00035094282.1 UniProtKB/TrEMBL
  ENSSSCT00035094307.1 UniProtKB/TrEMBL
  ENSSSCT00040104740.1 UniProtKB/TrEMBL
  ENSSSCT00040104743.1 UniProtKB/TrEMBL
  ENSSSCT00040104749.1 UniProtKB/TrEMBL
  ENSSSCT00045031328.1 UniProtKB/TrEMBL
  ENSSSCT00045031397.1 UniProtKB/TrEMBL
  ENSSSCT00045031476.1 UniProtKB/TrEMBL
  ENSSSCT00045031546.1 UniProtKB/TrEMBL
  ENSSSCT00050065033.1 UniProtKB/TrEMBL
  ENSSSCT00050065040.1 UniProtKB/TrEMBL
  ENSSSCT00050065041.1 UniProtKB/TrEMBL
  ENSSSCT00055050427.1 UniProtKB/TrEMBL
  ENSSSCT00055050621.1 UniProtKB/TrEMBL
  ENSSSCT00055050664.1 UniProtKB/TrEMBL
  ENSSSCT00055050716.1 UniProtKB/TrEMBL
  ENSSSCT00055050733.1 UniProtKB/TrEMBL
  ENSSSCT00055050787.1 UniProtKB/TrEMBL
  ENSSSCT00060025040.1 UniProtKB/TrEMBL
  ENSSSCT00060025045.1 UniProtKB/TrEMBL
  ENSSSCT00060025060.1 UniProtKB/TrEMBL
  ENSSSCT00060025065.1 UniProtKB/TrEMBL
  ENSSSCT00065090957.1 UniProtKB/TrEMBL
  ENSSSCT00065090967.1 UniProtKB/TrEMBL
  ENSSSCT00065090975.1 UniProtKB/TrEMBL
  ENSSSCT00070021980.1 UniProtKB/TrEMBL
  ENSSSCT00070022000.1 UniProtKB/TrEMBL
  ENSSSCT00070022014.1 UniProtKB/TrEMBL
  ENSSSCT00070022019.1 UniProtKB/TrEMBL
  ENSSSCT00070022026.1 UniProtKB/TrEMBL
InterPro PIG-P UniProtKB/TrEMBL
  PIG-P_GPI19 UniProtKB/TrEMBL
KEGG Report ssc:100154885 UniProtKB/TrEMBL
NCBI Gene PIGP ENTREZGENE
PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P UniProtKB/TrEMBL
  PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P UniProtKB/TrEMBL
Pfam PIG-P UniProtKB/TrEMBL
PIRSF PIG-P_GPI19 UniProtKB/TrEMBL
UniProt A0A287B1D6 ENTREZGENE
  A0A4X1TPU0 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TSC1_PIG UniProtKB/TrEMBL
  A0A4X1TSK5_PIG UniProtKB/TrEMBL
  A0A4X1TSM6_PIG UniProtKB/TrEMBL
  A0A5G2R0K9_PIG UniProtKB/TrEMBL
  A0A8D0I1K8_PIG UniProtKB/TrEMBL
  A0A8D0MJD4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1G6Q9_PIG UniProtKB/TrEMBL
  A0A8D1HPW5_PIG UniProtKB/TrEMBL
  A0A8D1RPB9_PIG UniProtKB/TrEMBL
  A0A8D1RXX2_PIG UniProtKB/TrEMBL
  A0A8D1T8V3_PIG UniProtKB/TrEMBL
  A0A8D1UB62_PIG UniProtKB/TrEMBL
  A0A8D1UK78_PIG UniProtKB/TrEMBL
UniProt Secondary A0A287B1D6 UniProtKB/TrEMBL
VGNC ID VGNC:91427 ENTREZGENE