TTC23L (tetratricopeptide repeat domain 23 like) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: TTC23L (tetratricopeptide repeat domain 23 like) Sus scrofa
Analyze
Symbol: TTC23L
Name: tetratricopeptide repeat domain 23 like
RGD ID: 13844349
Description: ASSOCIATED WITH alpha-methylacyl-CoA racemase deficiency (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tetratricopeptide repeat protein 23-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1620,443,661 - 20,478,632 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11620,441,253 - 20,491,569 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21621,343,863 - 21,402,683 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074  


Genomics

Comparative Map Data
TTC23L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1620,443,661 - 20,478,632 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11620,441,253 - 20,491,569 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21621,343,863 - 21,402,683 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TTC23L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38534,839,164 - 34,925,682 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl534,838,833 - 34,900,511 (+)EnsemblGRCh38hg38GRCh38
GRCh37534,839,269 - 34,925,787 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36534,875,026 - 34,935,324 (+)NCBINCBI36Build 36hg18NCBI36
Celera534,721,072 - 34,781,799 (+)NCBICelera
Cytogenetic Map5p13.2NCBI
HuRef534,787,782 - 34,847,729 (+)NCBIHuRef
CHM1_1534,841,468 - 34,901,927 (+)NCBICHM1_1
T2T-CHM13v2.0535,086,287 - 35,172,714 (+)NCBIT2T-CHM13v2.0
Ttc23l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391510,497,309 - 10,559,006 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1510,500,188 - 10,558,754 (-)EnsemblGRCm39 Ensembl
GRCm381510,497,223 - 10,558,775 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1510,500,102 - 10,558,668 (-)EnsemblGRCm38mm10GRCm38
MGSCv371510,433,702 - 10,488,423 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361510,444,827 - 10,504,789 (-)NCBIMGSCv36mm8
Celera1510,305,843 - 10,360,380 (-)NCBICelera
Cytogenetic Map15A1NCBI
cM Map155.35NCBI
Ttc23l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8261,203,825 - 61,265,453 (-)NCBIGRCr8
mRatBN7.2259,476,666 - 59,538,313 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl259,476,669 - 59,538,282 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0260,492,314 - 60,538,551 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl260,492,256 - 60,538,088 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0284,136,482 - 84,197,625 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4259,857,877 - 59,916,848 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera259,134,717 - 59,197,145 (+)NCBICelera
Cytogenetic Map2q16NCBI
Ttc23l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542619,987,093 - 20,020,364 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542619,985,179 - 20,029,902 (+)NCBIChiLan1.0ChiLan1.0
TTC23L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2475,436,262 - 75,499,618 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1573,584,931 - 73,653,250 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0575,470,535 - 75,532,771 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1580,750,710 - 80,810,923 (-)NCBIpanpan1.1PanPan1.1panPan2
TTC23L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1473,395,974 - 73,455,567 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl473,400,166 - 73,453,498 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha473,012,406 - 73,071,821 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0473,901,731 - 73,961,222 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl473,904,118 - 73,959,170 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1473,649,284 - 73,708,403 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0473,772,742 - 73,831,929 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0474,305,963 - 74,365,826 (-)NCBIUU_Cfam_GSD_1.0
Ttc23l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213224,663,609 - 224,721,156 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365186,641,805 - 6,706,937 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTC23L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1433,732,841 - 33,793,975 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl433,739,203 - 33,783,489 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607124,031,988 - 24,085,744 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttc23l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475920,022,653 - 20,052,817 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TTC23L
2073 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 10 4 3 4 2 23 2 3 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000073155   ⟹   ENSSSCP00000071972
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1620,443,661 - 20,478,632 (+)Ensembl
RefSeq Acc Id: XM_021076626   ⟹   XP_020932285
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11620,441,253 - 20,491,569 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020932285 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000071972.1
  ENSSSCP00025007275.1
  ENSSSCP00065012383.1
RefSeq Acc Id: XP_020932285   ⟸   XM_021076626
- UniProtKB: A0A8D0QV91 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000071972   ⟸   ENSSSCT00000073155


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000016827 Ensembl
  ENSSSCG00000061389 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00025013530 UniProtKB/TrEMBL
  ENSSSCG00065022745 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000073155.2 UniProtKB/TrEMBL
  ENSSSCT00025018065.1 UniProtKB/TrEMBL
  ENSSSCT00065030278.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TTC23/TTC23L UniProtKB/TrEMBL
NCBI Gene TTC23L ENTREZGENE
PANTHER PTHR14485 UniProtKB/TrEMBL
  TETRATRICOPEPTIDE REPEAT PROTEIN 23-LIKE UniProtKB/TrEMBL
Pfam TPR_12 UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A5G2RCJ0_PIG UniProtKB/TrEMBL
  A0A8D0QV91 ENTREZGENE, UniProtKB/TrEMBL