ITPRIP-AS1 (ITPRIP antisense RNA 1) - Rat Genome Database

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Gene: ITPRIP-AS1 (ITPRIP antisense RNA 1) Homo sapiens
Analyze
Symbol: ITPRIP-AS1
Name: ITPRIP antisense RNA 1
RGD ID: 13825328
HGNC Page HGNC:54100
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810104,323,364 - 104,326,745 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10104,323,369 - 104,327,004 (+)EnsemblGRCh38hg38GRCh38
GRCh3710106,083,122 - 106,086,503 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map10q25.1NCBI
HuRef1099,714,850 - 99,718,231 (+)NCBIHuRef
CHM1_110106,366,971 - 106,370,352 (+)NCBICHM1_1
T2T-CHM13v2.010105,211,517 - 105,214,898 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:16341674  


Genomics

Variants

.
Variants in ITPRIP-AS1
1 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 10q24.31-26.3(chr10:100600492-133622588)x3 copy number gain See cases [RCV000137747] Chr10:100600492..133622588 [GRCh38]
Chr10:102360249..135436092 [GRCh37]
Chr10:102350239..135286082 [NCBI36]
Chr10:10q24.31-26.3		 pathogenic
GRCh38/hg38 10q24.32-25.3(chr10:102732173-114085105)x1 copy number loss See cases [RCV000143371] Chr10:102732173..114085105 [GRCh38]
Chr10:104491930..115844864 [GRCh37]
Chr10:104481920..115834854 [NCBI36]
Chr10:10q24.32-25.3		 pathogenic
GRCh38/hg38 10q24.31-26.3(chr10:100194215-132432797)x3 copy number gain See cases [RCV000053564] Chr10:100194215..132432797 [GRCh38]
Chr10:101953972..134246301 [GRCh37]
Chr10:101943962..134096291 [NCBI36]
Chr10:10q24.31-26.3		 pathogenic
GRCh38/hg38 10q25.1(chr10:104077161-108350985)x3 copy number gain See cases [RCV000138300] Chr10:104077161..108350985 [GRCh38]
Chr10:105836919..110110743 [GRCh37]
Chr10:105826909..110100733 [NCBI36]
Chr10:10q25.1		 uncertain significance
GRCh38/hg38 10q23.33-25.3(chr10:95112607-116776637)x3 copy number gain See cases [RCV000050747] Chr10:95112607..116776637 [GRCh38]
Chr10:96872364..118383651 [GRCh37]
Chr10:96862354..118526138 [NCBI36]
Chr10:10q23.33-25.3		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:294
Count of miRNA genes:275
Interacting mature miRNAs:285
Transcripts:ENST00000434792
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 5 3 3 2 5 1 4 1
Low 157 850 640 57 589 29 1499 121 1191 79 661 667 33 298 802 3
Below cutoff 1715 1803 760 339 866 216 2160 1380 1972 264 698 830 130 781 1471 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000434792
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl10104,323,369 - 104,327,004 (+)Ensembl
RefSeq Acc Id: NR_120622
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810104,323,364 - 104,326,745 (+)NCBI
T2T-CHM13v2.010105,211,517 - 105,214,898 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC ITPRIP-AS1 COSMIC
Ensembl Genes ENSG00000228261 Ensembl
GTEx ENSG00000228261 GTEx
HGNC ID HGNC:54100 ENTREZGENE
Human Proteome Map ITPRIP-AS1 Human Proteome Map
NCBI Gene ITPRIP-AS1 ENTREZGENE
RNAcentral URS000075E45B RNACentral