Alkbh3 (alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Alkbh3 (alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase) Rattus norvegicus
Analyze
Symbol: Alkbh3
Name: alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase
RGD ID: 1359731
Description: Predicted to enable DNA demethylase activity; ferrous iron binding activity; and mRNA N1-methyladenosine dioxygenase activity. Predicted to be involved in DNA alkylation repair; cell population proliferation; and negative regulation of cytoplasmic translation. Predicted to be located in cytosol. Predicted to be active in mitochondrion and nucleoplasm. Orthologous to human ALKBH3 (alkB homolog 3, alpha-ketoglutarate dependent dioxygenase); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: AlkB homolog 3; alkB, alkylation repair homolog 3; alkB, alkylation repair homolog 3 (E. coli); alkylated DNA repair protein alkB homolog 3; alkylation repair-like protein 3; alpha-ketoglutarate-dependent dioxygenase alkB homolog 3; LOC362169; similar to RIKEN cDNA 1810020C19 gene
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83100,394,942 - 100,429,466 (-)NCBIGRCr8
mRatBN7.2379,939,515 - 79,972,820 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl379,939,600 - 79,972,000 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx383,413,118 - 83,445,373 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0392,012,208 - 92,044,463 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0389,857,713 - 89,889,968 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0382,874,242 - 82,907,467 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl382,874,248 - 82,906,581 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0389,575,451 - 89,608,158 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4378,386,098 - 78,418,432 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1378,282,525 - 78,314,860 (-)NCBI
Celera379,141,033 - 79,172,722 (-)NCBICelera
Cytogenetic Map3q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA,ISO)
mitochondrion  (IBA,ISO)
nucleoplasm  (IBA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:16174769   PMID:16858410   PMID:22055184   PMID:26863196   PMID:26863410  


Genomics

Comparative Map Data
Alkbh3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83100,394,942 - 100,429,466 (-)NCBIGRCr8
mRatBN7.2379,939,515 - 79,972,820 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl379,939,600 - 79,972,000 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx383,413,118 - 83,445,373 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0392,012,208 - 92,044,463 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0389,857,713 - 89,889,968 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0382,874,242 - 82,907,467 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl382,874,248 - 82,906,581 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0389,575,451 - 89,608,158 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4378,386,098 - 78,418,432 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1378,282,525 - 78,314,860 (-)NCBI
Celera379,141,033 - 79,172,722 (-)NCBICelera
Cytogenetic Map3q31NCBI
ALKBH3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381143,880,831 - 43,920,274 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1143,880,811 - 43,920,274 (+)EnsemblGRCh38hg38GRCh38
GRCh371143,902,381 - 43,941,824 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361143,858,971 - 43,898,389 (+)NCBINCBI36Build 36hg18NCBI36
Celera1144,048,227 - 44,087,676 (+)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1143,611,668 - 43,651,108 (+)NCBIHuRef
CHM1_11143,901,678 - 43,940,820 (+)NCBICHM1_1
T2T-CHM13v2.01144,036,210 - 44,075,625 (+)NCBIT2T-CHM13v2.0
Alkbh3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39293,810,979 - 93,841,099 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl293,810,895 - 93,841,152 (-)EnsemblGRCm39 Ensembl
GRCm38293,980,624 - 94,010,824 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl293,980,550 - 94,010,807 (-)EnsemblGRCm38mm10GRCm38
MGSCv37293,820,791 - 93,850,887 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36293,781,391 - 93,811,646 (-)NCBIMGSCv36mm8
Celera295,377,139 - 95,407,273 (-)NCBICelera
Cytogenetic Map2E1NCBI
cM Map251.62NCBI
Alkbh3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554223,657,765 - 3,695,409 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554223,660,504 - 3,695,352 (-)NCBIChiLan1.0ChiLan1.0
ALKBH3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2946,095,666 - 46,135,186 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11146,101,637 - 46,141,224 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01143,841,083 - 43,880,608 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11144,336,655 - 44,376,058 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1144,336,655 - 44,376,057 (+)Ensemblpanpan1.1panPan2
ALKBH3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11825,864,041 - 25,899,226 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1825,824,877 - 25,899,079 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1825,551,100 - 25,585,936 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01826,486,584 - 26,521,476 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1826,449,542 - 26,519,594 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11825,996,121 - 26,030,947 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01825,641,660 - 25,676,520 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01826,253,706 - 26,288,540 (-)NCBIUU_Cfam_GSD_1.0
Alkbh3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494722,615,131 - 22,666,079 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365624,741,371 - 4,777,727 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365624,743,595 - 4,777,685 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ALKBH3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl218,408,987 - 18,446,056 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1218,408,987 - 18,448,285 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2220,011,987 - 20,048,360 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ALKBH3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1121,463,744 - 21,505,940 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl121,462,516 - 21,505,934 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038118,701,961 - 118,743,776 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Alkbh3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247674,103,446 - 4,139,345 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247674,088,173 - 4,139,288 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Alkbh3
166 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:116
Count of miRNA genes:94
Interacting mature miRNAs:96
Transcripts:ENSRNOT00000030784
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)35318469289878207Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)33945463789115240Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)373376539118376539Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35378111291609953Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)33851780383517803Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)36113434889115068Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000030784   ⟹   ENSRNOP00000030278
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl379,939,600 - 79,972,000 (-)Ensembl
Rnor_6.0 Ensembl382,874,248 - 82,906,581 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112362   ⟹   ENSRNOP00000093084
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl379,939,600 - 79,972,000 (-)Ensembl
RefSeq Acc Id: NM_001014180   ⟹   NP_001014202
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83100,394,947 - 100,427,281 (-)NCBI
mRatBN7.2379,939,599 - 79,971,934 (-)NCBI
Rnor_6.0382,874,247 - 82,906,581 (-)NCBI
Rnor_5.0389,575,451 - 89,608,158 (-)NCBI
RGSC_v3.4378,386,098 - 78,418,432 (-)RGD
Celera379,141,033 - 79,172,722 (-)RGD
Sequence:
RefSeq Acc Id: XM_006234585   ⟹   XP_006234647
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83100,394,942 - 100,427,368 (-)NCBI
mRatBN7.2379,939,518 - 79,972,026 (-)NCBI
Rnor_6.0382,874,242 - 82,907,467 (-)NCBI
Rnor_5.0389,575,451 - 89,608,158 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039105432   ⟹   XP_038961360
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83100,410,870 - 100,429,466 (-)NCBI
mRatBN7.2379,955,889 - 79,972,820 (-)NCBI
RefSeq Acc Id: XM_039105433   ⟹   XP_038961361
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83100,394,942 - 100,429,466 (-)NCBI
mRatBN7.2379,939,518 - 79,972,032 (-)NCBI
RefSeq Acc Id: XM_063284151   ⟹   XP_063140221
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83100,412,375 - 100,429,466 (-)NCBI
RefSeq Acc Id: NP_001014202   ⟸   NM_001014180
- UniProtKB: Q5XIC8 (UniProtKB/Swiss-Prot),   A6HNK1 (UniProtKB/TrEMBL),   A0A8I6AIA0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234647   ⟸   XM_006234585
- Peptide Label: isoform X1
- UniProtKB: Q5XIC8 (UniProtKB/Swiss-Prot),   A6HNK1 (UniProtKB/TrEMBL),   A0A8I6AIA0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000030278   ⟸   ENSRNOT00000030784
RefSeq Acc Id: XP_038961361   ⟸   XM_039105433
- Peptide Label: isoform X3
- UniProtKB: A6HNK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961360   ⟸   XM_039105432
- Peptide Label: isoform X2
- UniProtKB: A0A158URU1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000093084   ⟸   ENSRNOT00000112362
RefSeq Acc Id: XP_063140221   ⟸   XM_063284151
- Peptide Label: isoform X4
Protein Domains
Fe2OG dioxygenase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XIC8-F1-model_v2 AlphaFold Q5XIC8 1-295 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692235
Promoter ID:EPDNEW_R2760
Type:multiple initiation site
Name:Alkbh3_1
Description:alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0382,906,594 - 82,906,654EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359731 AgrOrtholog
BioCyc Gene G2FUF-48659 BioCyc
Ensembl Genes ENSRNOG00000021678 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055016937 UniProtKB/Swiss-Prot
  ENSRNOG00060002989 UniProtKB/Swiss-Prot
  ENSRNOG00065025185 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000030784.6 UniProtKB/Swiss-Prot
  ENSRNOT00000112362.1 UniProtKB/TrEMBL
  ENSRNOT00055028781 UniProtKB/Swiss-Prot
  ENSRNOT00060004884 UniProtKB/Swiss-Prot
  ENSRNOT00065043381 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.120.590 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7192721 IMAGE-MGC_LOAD
InterPro AlkB-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AlkB-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ALKBH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Oxoglu/Fe-dep_dioxygenase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:362169 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:94691 IMAGE-MGC_LOAD
NCBI Gene 362169 ENTREZGENE
PANTHER ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR31212 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 2OG-FeII_Oxy_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Alkbh3 PhenoGen
PROSITE FE2OG_OXY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000021678 RatGTEx
  ENSRNOG00055016937 RatGTEx
  ENSRNOG00060002989 RatGTEx
  ENSRNOG00065025185 RatGTEx
Superfamily-SCOP Clavaminate synthase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A158URU1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AIA0 ENTREZGENE, UniProtKB/TrEMBL
  A6HNK1 ENTREZGENE, UniProtKB/TrEMBL
  A6HNK3 ENTREZGENE, UniProtKB/TrEMBL
  ALKB3_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-01 Alkbh3  alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase  Alkbh3  alkB, alkylation repair homolog 3 (E. coli)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Alkbh3  alkB, alkylation repair homolog 3 (E. coli)  LOC362169  similar to RIKEN cDNA 1810020C19 gene  Symbol and Name updated 1299863 APPROVED
2005-07-29 LOC362169  similar to RIKEN cDNA 1810020C19 gene      Symbol and Name status set to provisional 70820 PROVISIONAL